Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE AMIDOHYDROLASE-2 (EFI-TARGET 500288)FROM POLAROMONAS SP. JS666
 
Authors :  U. A. Ramagopal, R. Toro, J. A. Girlt, S. C. Almo, Enzyme Function Init
Date :  20 May 11  (Deposition) - 24 Aug 11  (Release) - 24 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  E,F,G,H  (1x)
Biol. Unit 5:  E,F  (1x)
Biol. Unit 6:  G,H  (1x)
Keywords :  Enzyme Function Initiative, Efi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, R. Toro, J. A. Girlt, S. C. Almo
Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target 500288)From Polaromonas Sp. Js666
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMIDOHYDROLASE 2
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: CSH30 L-2
    Expression System Strain: BL21(DE3) RIL
    Expression System Taxid: 469008
    Gene: BPRO_2061
    Organism Scientific: POLAROMONAS SP. JS666
    Organism Taxid: 296591
    Strain: JS666 / ATCC BAA-500

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x): AB      
Biological Unit 3 (1x):   CD    
Biological Unit 4 (1x):     EFGH
Biological Unit 5 (1x):     EF  
Biological Unit 6 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 129)

Asymmetric Unit (6, 129)
No.NameCountTypeFull Name
1ACT16Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3EPE7Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4GOL3Ligand/IonGLYCEROL
5MSE72Mod. Amino AcidSELENOMETHIONINE
6SO430Ligand/IonSULFATE ION
Biological Unit 1 (5, 63)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EPE3Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4GOL2Ligand/IonGLYCEROL
5MSE36Mod. Amino AcidSELENOMETHIONINE
6SO414Ligand/IonSULFATE ION
Biological Unit 2 (4, 33)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4GOL-1Ligand/IonGLYCEROL
5MSE18Mod. Amino AcidSELENOMETHIONINE
6SO48Ligand/IonSULFATE ION
Biological Unit 3 (5, 30)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4GOL2Ligand/IonGLYCEROL
5MSE18Mod. Amino AcidSELENOMETHIONINE
6SO46Ligand/IonSULFATE ION
Biological Unit 4 (5, 65)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EPE4Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4GOL1Ligand/IonGLYCEROL
5MSE36Mod. Amino AcidSELENOMETHIONINE
6SO416Ligand/IonSULFATE ION
Biological Unit 5 (5, 30)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4GOL1Ligand/IonGLYCEROL
5MSE18Mod. Amino AcidSELENOMETHIONINE
6SO45Ligand/IonSULFATE ION
Biological Unit 6 (4, 35)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4GOL-1Ligand/IonGLYCEROL
5MSE18Mod. Amino AcidSELENOMETHIONINE
6SO411Ligand/IonSULFATE ION

(-) Sites  (57, 57)

Asymmetric Unit (57, 57)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:25 , ASP A:26 , LYS A:27 , THR B:239 , THR B:240 , LYS B:242BINDING SITE FOR RESIDUE EPE A 400
02AC2SOFTWARETHR A:239 , THR A:240 , PRO B:25 , ASP B:26 , LYS B:27BINDING SITE FOR RESIDUE EPE B 400
03AC3SOFTWAREPRO C:25 , ASP C:26 , LYS C:27 , THR D:239 , THR D:240 , LYS D:242BINDING SITE FOR RESIDUE EPE D 400
04AC4SOFTWAREPRO E:25 , ASP E:26 , LYS E:27 , THR F:239 , THR F:240 , LYS F:242 , HOH F:1273BINDING SITE FOR RESIDUE EPE F 400
05AC5SOFTWARETHR E:239 , THR E:240 , LYS E:242 , PRO F:25 , ASP F:26 , LYS F:27 , HOH F:1449BINDING SITE FOR RESIDUE EPE F 349
06AC6SOFTWAREPRO G:25 , ASP G:26 , LYS G:27 , HOH G:1097 , THR H:239 , THR H:240 , LYS H:242BINDING SITE FOR RESIDUE EPE G 400
07AC7SOFTWARETHR G:239 , THR G:240 , LYS G:242 , PRO H:25 , ASP H:26 , LYS H:27BINDING SITE FOR RESIDUE EPE G 349
08AC8SOFTWAREARG F:42 , ARG F:45 , ACT F:351 , HOH F:1188BINDING SITE FOR RESIDUE SO4 F 350
09AC9SOFTWAREARG B:42 , ARG B:45 , HOH B:1568BINDING SITE FOR RESIDUE SO4 B 349
10BC1SOFTWAREARG D:42 , ARG D:45 , ACT D:353 , HOH D:900BINDING SITE FOR RESIDUE SO4 D 349
11BC2SOFTWAREARG H:42 , ARG H:45 , HOH H:933BINDING SITE FOR RESIDUE SO4 H 349
12BC3SOFTWAREPHE A:23 , ARG A:166 , ASN A:167BINDING SITE FOR RESIDUE SO4 A 349
13BC4SOFTWAREARG E:174 , HOH E:483 , HOH E:641 , HOH E:1456 , SER F:171BINDING SITE FOR RESIDUE SO4 E 349
14BC5SOFTWAREARG C:174 , LEU D:169 , SER D:171 , HOH D:362BINDING SITE FOR RESIDUE SO4 D 350
15BC6SOFTWAREARG E:42 , ARG E:45 , ACT E:353 , HOH E:1079BINDING SITE FOR RESIDUE SO4 E 350
16BC7SOFTWAREPHE G:23 , PRO G:62 , ARG G:166 , ASN G:167BINDING SITE FOR RESIDUE SO4 G 350
17BC8SOFTWAREARG G:42 , ARG G:45 , ACT G:356 , HOH G:1317BINDING SITE FOR RESIDUE SO4 G 351
18BC9SOFTWAREARG G:174 , LEU H:169 , SER H:171 , HOH H:546BINDING SITE FOR RESIDUE SO4 H 350
19CC1SOFTWAREARG A:42 , ARG A:45 , LEU A:46 , HOH A:1594BINDING SITE FOR RESIDUE SO4 A 350
20CC2SOFTWAREARG A:174 , LEU B:169 , SER B:171 , HOH B:646BINDING SITE FOR RESIDUE SO4 B 350
21CC3SOFTWAREGLN E:132 , LEU E:169 , HOH E:1087 , HOH E:1241 , HOH E:1523BINDING SITE FOR RESIDUE SO4 E 351
22CC4SOFTWAREPRO D:30 , ARG D:33BINDING SITE FOR RESIDUE SO4 D 351
23CC5SOFTWAREARG D:42 , ARG D:45 , HOH D:1440BINDING SITE FOR RESIDUE SO4 D 352
24CC6SOFTWAREHIS C:232 , LYS C:248BINDING SITE FOR RESIDUE SO4 C 349
25CC7SOFTWAREARG H:78 , ARG H:115BINDING SITE FOR RESIDUE SO4 H 351
26CC8SOFTWAREARG G:247 , ASP G:251 , HOH G:1110BINDING SITE FOR RESIDUE SO4 G 352
27CC9SOFTWAREPRO B:30 , ARG B:33BINDING SITE FOR RESIDUE SO4 B 351
28DC1SOFTWAREPHE E:23 , PRO E:62 , ARG E:166 , ASN E:167 , HOH E:1333BINDING SITE FOR RESIDUE SO4 E 352
29DC2SOFTWAREARG A:247BINDING SITE FOR RESIDUE SO4 A 351
30DC3SOFTWAREARG B:78 , ARG B:115BINDING SITE FOR RESIDUE SO4 B 352
31DC4SOFTWAREARG H:42 , ARG H:45BINDING SITE FOR RESIDUE SO4 H 352
32DC5SOFTWAREPHE C:23 , PRO C:62 , ARG C:166 , ASN C:167 , HOH C:376BINDING SITE FOR RESIDUE SO4 C 350
33DC6SOFTWAREPHE H:23 , PRO H:62 , ARG H:166 , ASN H:167 , PHE H:189 , HOH H:718BINDING SITE FOR RESIDUE SO4 H 353
34DC7SOFTWAREGLN G:132 , HOH G:451 , HOH G:1166BINDING SITE FOR RESIDUE SO4 G 353
35DC8SOFTWAREARG G:78 , ARG G:115BINDING SITE FOR RESIDUE SO4 G 354
36DC9SOFTWAREHOH A:1065 , ARG C:42 , ARG C:45BINDING SITE FOR RESIDUE SO4 A 352
37EC1SOFTWAREARG D:78 , LYS G:323 , ARG G:326BINDING SITE FOR RESIDUE SO4 G 355
38EC2SOFTWARETRP D:288 , ASN D:292 , ILE D:293 , ASP D:294 , SO4 D:349 , HOH D:900BINDING SITE FOR RESIDUE ACT D 353
39EC3SOFTWARELEU G:46 , TRP G:288 , ASN G:292 , ILE G:293 , ASP G:294 , SO4 G:351 , HOH G:1317BINDING SITE FOR RESIDUE ACT G 356
40EC4SOFTWARETRP E:288 , ASN E:292 , ILE E:293 , ASP E:294 , SO4 E:350 , HOH E:1079BINDING SITE FOR RESIDUE ACT E 353
41EC5SOFTWARETRP H:288 , ASN H:292 , ILE H:293 , ASP H:294 , HOH H:933BINDING SITE FOR RESIDUE ACT H 354
42EC6SOFTWARELEU A:46 , TRP A:288 , ASN A:292 , ILE A:293 , ASP A:294 , HOH A:1594BINDING SITE FOR RESIDUE ACT A 353
43EC7SOFTWAREHOH A:1065 , LEU C:46 , TRP C:288 , ASN C:292 , ILE C:293 , ASP C:294BINDING SITE FOR RESIDUE ACT C 351
44EC8SOFTWARETRP B:288 , ASN B:292 , ILE B:293 , ASP B:294 , HOH B:1568BINDING SITE FOR RESIDUE ACT B 353
45EC9SOFTWAREHIS C:295 , HOH C:868 , LYS D:238 , HOH D:1043BINDING SITE FOR RESIDUE ACT C 352
46FC1SOFTWARETRP F:288 , ASN F:292 , ILE F:293 , ASP F:294 , SO4 F:350 , HOH F:1188BINDING SITE FOR RESIDUE ACT F 351
47FC2SOFTWAREARG B:45BINDING SITE FOR RESIDUE ACT B 354
48FC3SOFTWAREARG F:45BINDING SITE FOR RESIDUE ACT F 352
49FC4SOFTWAREHIS A:295 , HOH A:743 , LYS B:238 , HOH B:1042BINDING SITE FOR RESIDUE ACT A 354
50FC5SOFTWAREHIS G:295 , HOH G:1044 , LYS H:238BINDING SITE FOR RESIDUE ACT G 357
51FC6SOFTWAREHIS G:232BINDING SITE FOR RESIDUE ACT G 358
52FC7SOFTWARELYS A:238 , HOH A:369 , HIS B:295BINDING SITE FOR RESIDUE ACT A 355
53FC8SOFTWAREHIS E:295 , HOH E:870 , HOH E:1139 , LYS F:238BINDING SITE FOR RESIDUE ACT E 354
54FC9SOFTWAREPHE F:23 , PRO F:62 , ARG F:166 , ASN F:167BINDING SITE FOR RESIDUE GOL F 353
55GC1SOFTWAREGLY C:178 , HIS C:179 , ALA C:180 , HOH C:401BINDING SITE FOR RESIDUE GOL C 353
56GC2SOFTWAREPHE D:23 , ARG D:166 , ASN D:167 , HOH D:619BINDING SITE FOR RESIDUE GOL D 354
57GC3SOFTWAREASN B:167 , HOH B:1406BINDING SITE FOR RESIDUE CL B 355

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S4T)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ala A:61 -Pro A:62
2Trp A:288 -Pro A:289
3Ala B:61 -Pro B:62
4Trp B:288 -Pro B:289
5Ala C:61 -Pro C:62
6Trp C:288 -Pro C:289
7Ala D:61 -Pro D:62
8Trp D:288 -Pro D:289
9Ala E:61 -Pro E:62
10Trp E:288 -Pro E:289
11Ala F:61 -Pro F:62
12Trp F:288 -Pro F:289
13Ala G:61 -Pro G:62
14Trp G:288 -Pro G:289
15Ala H:61 -Pro H:62
16Trp H:288 -Pro H:289

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S4T)

(-) Exons   (0, 0)

(no "Exon" information available for 3S4T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
 aligned with Q12BV1_POLSJ | Q12BV1 from UniProtKB/TrEMBL  Length:326

    Alignment length:332
                                                                                                                                                                                                                                                                                                                                                               326      
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     |   -  
         Q12BV1_POLSJ     1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLNR------   -
               SCOP domains d3s4ta_ A: automated matches                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s4t A   1 mNGKIALEEHFATEETLmDSAGFVPDKDWPELRSRLLDIQDRRVRLmDEHGIETmILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPmQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDmAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLmGSGLFDKYPALKIILGHmGEGLPYSmWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLNRAENLYF 332
                            |       10       |20        30        40      | 50    |   60        70        80        90       100  |    110       120       130       140   |   150       160       170       180       190       200|      210       220      |230       240       250       260       270       280       290       300       310       320       330  
                            |               18-MSE                       47-MSE  55-MSE                                         103-MSE                                  144-MSE                                                  201-MSE           219-MSE 227-MSE                                                                                                     
                            1-MSE                                                                                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:324
 aligned with Q12BV1_POLSJ | Q12BV1 from UniProtKB/TrEMBL  Length:326

    Alignment length:324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    
         Q12BV1_POLSJ     1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
               SCOP domains d3s4tb_ B: automated matches                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s4t B   1 mNGKIALEEHFATEETLmDSAGFVPDKDWPELRSRLLDIQDRRVRLmDEHGIETmILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPmQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDmAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLmGSGLFDKYPALKIILGHmGEGLPYSmWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
                            |       10       |20        30        40      | 50    |   60        70        80        90       100  |    110       120       130       140   |   150       160       170       180       190       200|      210       220      |230       240       250       260       270       280       290       300       310       320    
                            1-MSE           18-MSE                       47-MSE  55-MSE                                         103-MSE                                  144-MSE                                                  201-MSE           219-MSE 227-MSE                                                                                             


Chain C from PDB  Type:PROTEIN  Length:326
 aligned with Q12BV1_POLSJ | Q12BV1 from UniProtKB/TrEMBL  Length:326

    Alignment length:326
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
         Q12BV1_POLSJ     1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLNR 326
               SCOP domains d3s4tc_ C: automated matches                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s4t C   1 mNGKIALEEHFATEETLmDSAGFVPDKDWPELRSRLLDIQDRRVRLmDEHGIETmILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPmQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDmAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLmGSGLFDKYPALKIILGHmGEGLPYSmWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLNR 326
                            |       10       |20        30        40      | 50    |   60        70        80        90       100  |    110       120       130       140   |   150       160       170       180       190       200|      210       220      |230       240       250       260       270       280       290       300       310       320      
                            1-MSE           18-MSE                       47-MSE  55-MSE                                         103-MSE                                  144-MSE                                                  201-MSE           219-MSE 227-MSE                                                                                               


Chain D from PDB  Type:PROTEIN  Length:324
 aligned with Q12BV1_POLSJ | Q12BV1 from UniProtKB/TrEMBL  Length:326

    Alignment length:324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    
         Q12BV1_POLSJ     1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
               SCOP domains d3s4td_ D: automated matches                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s4t D   1 mNGKIALEEHFATEETLmDSAGFVPDKDWPELRSRLLDIQDRRVRLmDEHGIETmILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPmQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDmAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLmGSGLFDKYPALKIILGHmGEGLPYSmWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
                            |       10       |20        30        40      | 50    |   60        70        80        90       100  |    110       120       130       140   |   150       160       170       180       190       200|      210       220      |230       240       250       260       270       280       290       300       310       320    
                            1-MSE           18-MSE                       47-MSE  55-MSE                                         103-MSE                                  144-MSE                                                  201-MSE           219-MSE 227-MSE                                                                                             


Chain E from PDB  Type:PROTEIN  Length:325
 aligned with Q12BV1_POLSJ | Q12BV1 from UniProtKB/TrEMBL  Length:326

    Alignment length:325
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     
         Q12BV1_POLSJ     1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLN 325
               SCOP domains d3s4te_ E: automated matches                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s4t E   1 mNGKIALEEHFATEETLmDSAGFVPDKDWPELRSRLLDIQDRRVRLmDEHGIETmILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPmQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDmAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLmGSGLFDKYPALKIILGHmGEGLPYSmWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLN 325
                            |       10       |20        30        40      | 50    |   60        70        80        90       100  |    110       120       130       140   |   150       160       170       180       190       200|      210       220      |230       240       250       260       270       280       290       300       310       320     
                            1-MSE           18-MSE                       47-MSE  55-MSE                                         103-MSE                                  144-MSE                                                  201-MSE           219-MSE 227-MSE                                                                                              


Chain F from PDB  Type:PROTEIN  Length:324
 aligned with Q12BV1_POLSJ | Q12BV1 from UniProtKB/TrEMBL  Length:326

    Alignment length:324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    
         Q12BV1_POLSJ     1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
               SCOP domains d3s4tf_ F: automated matches                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s4t F   1 mNGKIALEEHFATEETLmDSAGFVPDKDWPELRSRLLDIQDRRVRLmDEHGIETmILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPmQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDmAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLmGSGLFDKYPALKIILGHmGEGLPYSmWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
                            |       10       |20        30        40      | 50    |   60        70        80        90       100  |    110       120       130       140   |   150       160       170       180       190       200|      210       220      |230       240       250       260       270       280       290       300       310       320    
                            1-MSE           18-MSE                       47-MSE  55-MSE                                         103-MSE                                  144-MSE                                                  201-MSE           219-MSE 227-MSE                                                                                             


Chain G from PDB  Type:PROTEIN  Length:327
 aligned with Q12BV1_POLSJ | Q12BV1 from UniProtKB/TrEMBL  Length:326

    Alignment length:327
                                                                                                                                                                                                                                                                                                                                                               326 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     | 
         Q12BV1_POLSJ     1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLNR-   -
               SCOP domains d3s4tg_ G: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s4t G   1 mNGKIALEEHFATEETLmDSAGFVPDKDWPELRSRLLDIQDRRVRLmDEHGIETmILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPmQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDmAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLmGSGLFDKYPALKIILGHmGEGLPYSmWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLNRA 327
                            |       10       |20        30        40      | 50    |   60        70        80        90       100  |    110       120       130       140   |   150       160       170       180       190       200|      210       220      |230       240       250       260       270       280       290       300       310       320       
                            1-MSE           18-MSE                       47-MSE  55-MSE                                         103-MSE                                  144-MSE                                                  201-MSE           219-MSE 227-MSE                                                                                                


Chain H from PDB  Type:PROTEIN  Length:324
 aligned with Q12BV1_POLSJ | Q12BV1 from UniProtKB/TrEMBL  Length:326

    Alignment length:324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    
         Q12BV1_POLSJ     1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
               SCOP domains d3s4th_ H: automated matches                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3s4t H   1 mNGKIALEEHFATEETLmDSAGFVPDKDWPELRSRLLDIQDRRVRLmDEHGIETmILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPmQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDmAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLmGSGLFDKYPALKIILGHmGEGLPYSmWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
                            |       10       |20        30        40      | 50    |   60        70        80        90       100  |    110       120       130       140   |   150       160       170       180       190       200|      210       220      |230       240       250       260       270       280       290       300       310       320    
                            1-MSE           18-MSE                       47-MSE  55-MSE                                         103-MSE                                  144-MSE                                                  201-MSE           219-MSE 227-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S4T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3S4T)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q12BV1_POLSJ | Q12BV1)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EPE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:61 - Pro A:62   [ RasMol ]  
    Ala B:61 - Pro B:62   [ RasMol ]  
    Ala C:61 - Pro C:62   [ RasMol ]  
    Ala D:61 - Pro D:62   [ RasMol ]  
    Ala E:61 - Pro E:62   [ RasMol ]  
    Ala F:61 - Pro F:62   [ RasMol ]  
    Ala G:61 - Pro G:62   [ RasMol ]  
    Ala H:61 - Pro H:62   [ RasMol ]  
    Trp A:288 - Pro A:289   [ RasMol ]  
    Trp B:288 - Pro B:289   [ RasMol ]  
    Trp C:288 - Pro C:289   [ RasMol ]  
    Trp D:288 - Pro D:289   [ RasMol ]  
    Trp E:288 - Pro E:289   [ RasMol ]  
    Trp F:288 - Pro F:289   [ RasMol ]  
    Trp G:288 - Pro G:289   [ RasMol ]  
    Trp H:288 - Pro H:289   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3s4t
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q12BV1_POLSJ | Q12BV1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q12BV1_POLSJ | Q12BV1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q12BV1_POLSJ | Q12BV1: 4qro

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3S4T)