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3S4T
Biol. Unit 2
Info
Asym.Unit (921 KB)
Biol.Unit 1 (456 KB)
Biol.Unit 2 (234 KB)
Biol.Unit 3 (232 KB)
Biol.Unit 4 (458 KB)
Biol.Unit 5 (232 KB)
Biol.Unit 6 (234 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE AMIDOHYDROLASE-2 (EFI-TARGET 500288)FROM POLAROMONAS SP. JS666
Authors
:
U. A. Ramagopal, R. Toro, J. A. Girlt, S. C. Almo, Enzyme Function Init
Date
:
20 May 11 (Deposition) - 24 Aug 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F,G,H (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: G,H (1x)
Keywords
:
Enzyme Function Initiative, Efi, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. A. Ramagopal, R. Toro, J. A. Girlt, S. C. Almo
Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target 500288)From Polaromonas Sp. Js666
To Be Published
[
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Hetero Components
(4, 33)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
1o: ACETATE ION (ACTo)
1p: ACETATE ION (ACTp)
2a: CHLORIDE ION (CLa)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
3e: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEe)
3f: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEf)
3g: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEg)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: SELENOMETHIONINE (MSEa)
5aa: SELENOMETHIONINE (MSEaa)
5ab: SELENOMETHIONINE (MSEab)
5ac: SELENOMETHIONINE (MSEac)
5ad: SELENOMETHIONINE (MSEad)
5ae: SELENOMETHIONINE (MSEae)
5af: SELENOMETHIONINE (MSEaf)
5ag: SELENOMETHIONINE (MSEag)
5ah: SELENOMETHIONINE (MSEah)
5ai: SELENOMETHIONINE (MSEai)
5aj: SELENOMETHIONINE (MSEaj)
5ak: SELENOMETHIONINE (MSEak)
5al: SELENOMETHIONINE (MSEal)
5am: SELENOMETHIONINE (MSEam)
5an: SELENOMETHIONINE (MSEan)
5ao: SELENOMETHIONINE (MSEao)
5ap: SELENOMETHIONINE (MSEap)
5aq: SELENOMETHIONINE (MSEaq)
5ar: SELENOMETHIONINE (MSEar)
5as: SELENOMETHIONINE (MSEas)
5at: SELENOMETHIONINE (MSEat)
5au: SELENOMETHIONINE (MSEau)
5av: SELENOMETHIONINE (MSEav)
5aw: SELENOMETHIONINE (MSEaw)
5ax: SELENOMETHIONINE (MSEax)
5ay: SELENOMETHIONINE (MSEay)
5az: SELENOMETHIONINE (MSEaz)
5b: SELENOMETHIONINE (MSEb)
5ba: SELENOMETHIONINE (MSEba)
5bb: SELENOMETHIONINE (MSEbb)
5bc: SELENOMETHIONINE (MSEbc)
5bd: SELENOMETHIONINE (MSEbd)
5be: SELENOMETHIONINE (MSEbe)
5bf: SELENOMETHIONINE (MSEbf)
5bg: SELENOMETHIONINE (MSEbg)
5bh: SELENOMETHIONINE (MSEbh)
5bi: SELENOMETHIONINE (MSEbi)
5bj: SELENOMETHIONINE (MSEbj)
5bk: SELENOMETHIONINE (MSEbk)
5bl: SELENOMETHIONINE (MSEbl)
5bm: SELENOMETHIONINE (MSEbm)
5bn: SELENOMETHIONINE (MSEbn)
5bo: SELENOMETHIONINE (MSEbo)
5bp: SELENOMETHIONINE (MSEbp)
5bq: SELENOMETHIONINE (MSEbq)
5br: SELENOMETHIONINE (MSEbr)
5bs: SELENOMETHIONINE (MSEbs)
5bt: SELENOMETHIONINE (MSEbt)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
5w: SELENOMETHIONINE (MSEw)
5x: SELENOMETHIONINE (MSEx)
5y: SELENOMETHIONINE (MSEy)
5z: SELENOMETHIONINE (MSEz)
6a: SULFATE ION (SO4a)
6aa: SULFATE ION (SO4aa)
6ab: SULFATE ION (SO4ab)
6ac: SULFATE ION (SO4ac)
6ad: SULFATE ION (SO4ad)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
6u: SULFATE ION (SO4u)
6v: SULFATE ION (SO4v)
6w: SULFATE ION (SO4w)
6x: SULFATE ION (SO4x)
6y: SULFATE ION (SO4y)
6z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
GOL
-1
Ligand/Ion
GLYCEROL
5
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
6
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC3 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC9 (SOFTWARE)
08: DC2 (SOFTWARE)
09: DC3 (SOFTWARE)
10: DC9 (SOFTWARE)
11: EC6 (SOFTWARE)
12: EC7 (SOFTWARE)
13: EC8 (SOFTWARE)
14: FC2 (SOFTWARE)
15: FC4 (SOFTWARE)
16: FC7 (SOFTWARE)
17: GC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:25 , ASP A:26 , LYS A:27 , THR B:239 , THR B:240 , LYS B:242
BINDING SITE FOR RESIDUE EPE A 400
02
AC2
SOFTWARE
THR A:239 , THR A:240 , PRO B:25 , ASP B:26 , LYS B:27
BINDING SITE FOR RESIDUE EPE B 400
03
AC9
SOFTWARE
ARG B:42 , ARG B:45 , HOH B:1568
BINDING SITE FOR RESIDUE SO4 B 349
04
BC3
SOFTWARE
PHE A:23 , ARG A:166 , ASN A:167
BINDING SITE FOR RESIDUE SO4 A 349
05
CC1
SOFTWARE
ARG A:42 , ARG A:45 , LEU A:46 , HOH A:1594
BINDING SITE FOR RESIDUE SO4 A 350
06
CC2
SOFTWARE
ARG A:174 , LEU B:169 , SER B:171 , HOH B:646
BINDING SITE FOR RESIDUE SO4 B 350
07
CC9
SOFTWARE
PRO B:30 , ARG B:33
BINDING SITE FOR RESIDUE SO4 B 351
08
DC2
SOFTWARE
ARG A:247
BINDING SITE FOR RESIDUE SO4 A 351
09
DC3
SOFTWARE
ARG B:78 , ARG B:115
BINDING SITE FOR RESIDUE SO4 B 352
10
DC9
SOFTWARE
HOH A:1065 , ARG C:42 , ARG C:45
BINDING SITE FOR RESIDUE SO4 A 352
11
EC6
SOFTWARE
LEU A:46 , TRP A:288 , ASN A:292 , ILE A:293 , ASP A:294 , HOH A:1594
BINDING SITE FOR RESIDUE ACT A 353
12
EC7
SOFTWARE
HOH A:1065 , LEU C:46 , TRP C:288 , ASN C:292 , ILE C:293 , ASP C:294
BINDING SITE FOR RESIDUE ACT C 351
13
EC8
SOFTWARE
TRP B:288 , ASN B:292 , ILE B:293 , ASP B:294 , HOH B:1568
BINDING SITE FOR RESIDUE ACT B 353
14
FC2
SOFTWARE
ARG B:45
BINDING SITE FOR RESIDUE ACT B 354
15
FC4
SOFTWARE
HIS A:295 , HOH A:743 , LYS B:238 , HOH B:1042
BINDING SITE FOR RESIDUE ACT A 354
16
FC7
SOFTWARE
LYS A:238 , HOH A:369 , HIS B:295
BINDING SITE FOR RESIDUE ACT A 355
17
GC3
SOFTWARE
ASN B:167 , HOH B:1406
BINDING SITE FOR RESIDUE CL B 355
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3s4ta_ (A:)
1b: SCOP_d3s4tb_ (B:)
1c: SCOP_d3s4tc_ (C:)
1d: SCOP_d3s4td_ (D:)
1e: SCOP_d3s4te_ (E:)
1f: SCOP_d3s4tf_ (F:)
1g: SCOP_d3s4tg_ (G:)
1h: SCOP_d3s4th_ (H:)
View:
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Classes
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(
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Folds
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Superfamilies
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Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
PP1699/LP2961-like
(17)
Protein domain
:
automated matches
(1)
Polaromonas sp. [TaxId: 296591]
(1)
1a
d3s4ta_
A:
1b
d3s4tb_
B:
1c
d3s4tc_
C:
1d
d3s4td_
D:
1e
d3s4te_
E:
1f
d3s4tf_
F:
1g
d3s4tg_
G:
1h
d3s4th_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Asymmetric Unit 1
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