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3S4T
Biol. Unit 3
Info
Asym.Unit (921 KB)
Biol.Unit 1 (456 KB)
Biol.Unit 2 (234 KB)
Biol.Unit 3 (232 KB)
Biol.Unit 4 (458 KB)
Biol.Unit 5 (232 KB)
Biol.Unit 6 (234 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE AMIDOHYDROLASE-2 (EFI-TARGET 500288)FROM POLAROMONAS SP. JS666
Authors
:
U. A. Ramagopal, R. Toro, J. A. Girlt, S. C. Almo, Enzyme Function Init
Date
:
20 May 11 (Deposition) - 24 Aug 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F,G,H (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: G,H (1x)
Keywords
:
Enzyme Function Initiative, Efi, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. A. Ramagopal, R. Toro, J. A. Girlt, S. C. Almo
Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target 500288)From Polaromonas Sp. Js666
To Be Published
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Hetero Components
(5, 30)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
1o: ACETATE ION (ACTo)
1p: ACETATE ION (ACTp)
2a: CHLORIDE ION (CLa)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
3e: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEe)
3f: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEf)
3g: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEg)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: SELENOMETHIONINE (MSEa)
5aa: SELENOMETHIONINE (MSEaa)
5ab: SELENOMETHIONINE (MSEab)
5ac: SELENOMETHIONINE (MSEac)
5ad: SELENOMETHIONINE (MSEad)
5ae: SELENOMETHIONINE (MSEae)
5af: SELENOMETHIONINE (MSEaf)
5ag: SELENOMETHIONINE (MSEag)
5ah: SELENOMETHIONINE (MSEah)
5ai: SELENOMETHIONINE (MSEai)
5aj: SELENOMETHIONINE (MSEaj)
5ak: SELENOMETHIONINE (MSEak)
5al: SELENOMETHIONINE (MSEal)
5am: SELENOMETHIONINE (MSEam)
5an: SELENOMETHIONINE (MSEan)
5ao: SELENOMETHIONINE (MSEao)
5ap: SELENOMETHIONINE (MSEap)
5aq: SELENOMETHIONINE (MSEaq)
5ar: SELENOMETHIONINE (MSEar)
5as: SELENOMETHIONINE (MSEas)
5at: SELENOMETHIONINE (MSEat)
5au: SELENOMETHIONINE (MSEau)
5av: SELENOMETHIONINE (MSEav)
5aw: SELENOMETHIONINE (MSEaw)
5ax: SELENOMETHIONINE (MSEax)
5ay: SELENOMETHIONINE (MSEay)
5az: SELENOMETHIONINE (MSEaz)
5b: SELENOMETHIONINE (MSEb)
5ba: SELENOMETHIONINE (MSEba)
5bb: SELENOMETHIONINE (MSEbb)
5bc: SELENOMETHIONINE (MSEbc)
5bd: SELENOMETHIONINE (MSEbd)
5be: SELENOMETHIONINE (MSEbe)
5bf: SELENOMETHIONINE (MSEbf)
5bg: SELENOMETHIONINE (MSEbg)
5bh: SELENOMETHIONINE (MSEbh)
5bi: SELENOMETHIONINE (MSEbi)
5bj: SELENOMETHIONINE (MSEbj)
5bk: SELENOMETHIONINE (MSEbk)
5bl: SELENOMETHIONINE (MSEbl)
5bm: SELENOMETHIONINE (MSEbm)
5bn: SELENOMETHIONINE (MSEbn)
5bo: SELENOMETHIONINE (MSEbo)
5bp: SELENOMETHIONINE (MSEbp)
5bq: SELENOMETHIONINE (MSEbq)
5br: SELENOMETHIONINE (MSEbr)
5bs: SELENOMETHIONINE (MSEbs)
5bt: SELENOMETHIONINE (MSEbt)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
5w: SELENOMETHIONINE (MSEw)
5x: SELENOMETHIONINE (MSEx)
5y: SELENOMETHIONINE (MSEy)
5z: SELENOMETHIONINE (MSEz)
6a: SULFATE ION (SO4a)
6aa: SULFATE ION (SO4aa)
6ab: SULFATE ION (SO4ab)
6ac: SULFATE ION (SO4ac)
6ad: SULFATE ION (SO4ad)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
6u: SULFATE ION (SO4u)
6v: SULFATE ION (SO4v)
6w: SULFATE ION (SO4w)
6x: SULFATE ION (SO4x)
6y: SULFATE ION (SO4y)
6z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
GOL
2
Ligand/Ion
GLYCEROL
5
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
6
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC3 (SOFTWARE)
02: BC1 (SOFTWARE)
03: BC5 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: CC6 (SOFTWARE)
07: DC5 (SOFTWARE)
08: DC9 (SOFTWARE)
09: EC1 (SOFTWARE)
10: EC2 (SOFTWARE)
11: EC7 (SOFTWARE)
12: EC9 (SOFTWARE)
13: GC1 (SOFTWARE)
14: GC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
PRO C:25 , ASP C:26 , LYS C:27 , THR D:239 , THR D:240 , LYS D:242
BINDING SITE FOR RESIDUE EPE D 400
02
BC1
SOFTWARE
ARG D:42 , ARG D:45 , ACT D:353 , HOH D:900
BINDING SITE FOR RESIDUE SO4 D 349
03
BC5
SOFTWARE
ARG C:174 , LEU D:169 , SER D:171 , HOH D:362
BINDING SITE FOR RESIDUE SO4 D 350
04
CC4
SOFTWARE
PRO D:30 , ARG D:33
BINDING SITE FOR RESIDUE SO4 D 351
05
CC5
SOFTWARE
ARG D:42 , ARG D:45 , HOH D:1440
BINDING SITE FOR RESIDUE SO4 D 352
06
CC6
SOFTWARE
HIS C:232 , LYS C:248
BINDING SITE FOR RESIDUE SO4 C 349
07
DC5
SOFTWARE
PHE C:23 , PRO C:62 , ARG C:166 , ASN C:167 , HOH C:376
BINDING SITE FOR RESIDUE SO4 C 350
08
DC9
SOFTWARE
HOH A:1065 , ARG C:42 , ARG C:45
BINDING SITE FOR RESIDUE SO4 A 352
09
EC1
SOFTWARE
ARG D:78 , LYS G:323 , ARG G:326
BINDING SITE FOR RESIDUE SO4 G 355
10
EC2
SOFTWARE
TRP D:288 , ASN D:292 , ILE D:293 , ASP D:294 , SO4 D:349 , HOH D:900
BINDING SITE FOR RESIDUE ACT D 353
11
EC7
SOFTWARE
HOH A:1065 , LEU C:46 , TRP C:288 , ASN C:292 , ILE C:293 , ASP C:294
BINDING SITE FOR RESIDUE ACT C 351
12
EC9
SOFTWARE
HIS C:295 , HOH C:868 , LYS D:238 , HOH D:1043
BINDING SITE FOR RESIDUE ACT C 352
13
GC1
SOFTWARE
GLY C:178 , HIS C:179 , ALA C:180 , HOH C:401
BINDING SITE FOR RESIDUE GOL C 353
14
GC2
SOFTWARE
PHE D:23 , ARG D:166 , ASN D:167 , HOH D:619
BINDING SITE FOR RESIDUE GOL D 354
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3s4ta_ (A:)
1b: SCOP_d3s4tb_ (B:)
1c: SCOP_d3s4tc_ (C:)
1d: SCOP_d3s4td_ (D:)
1e: SCOP_d3s4te_ (E:)
1f: SCOP_d3s4tf_ (F:)
1g: SCOP_d3s4tg_ (G:)
1h: SCOP_d3s4th_ (H:)
View:
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Label:
Classes
(
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(
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Folds
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
PP1699/LP2961-like
(17)
Protein domain
:
automated matches
(1)
Polaromonas sp. [TaxId: 296591]
(1)
1a
d3s4ta_
A:
1b
d3s4tb_
B:
1c
d3s4tc_
C:
1d
d3s4td_
D:
1e
d3s4te_
E:
1f
d3s4tf_
F:
1g
d3s4tg_
G:
1h
d3s4th_
H:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Atom Selection
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Protein & NOT Site
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Asymmetric Unit 1
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