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3S4T
Biol. Unit 6
Info
Asym.Unit (921 KB)
Biol.Unit 1 (456 KB)
Biol.Unit 2 (234 KB)
Biol.Unit 3 (232 KB)
Biol.Unit 4 (458 KB)
Biol.Unit 5 (232 KB)
Biol.Unit 6 (234 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE AMIDOHYDROLASE-2 (EFI-TARGET 500288)FROM POLAROMONAS SP. JS666
Authors
:
U. A. Ramagopal, R. Toro, J. A. Girlt, S. C. Almo, Enzyme Function Init
Date
:
20 May 11 (Deposition) - 24 Aug 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F,G,H (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: G,H (1x)
Keywords
:
Enzyme Function Initiative, Efi, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. A. Ramagopal, R. Toro, J. A. Girlt, S. C. Almo
Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target 500288)From Polaromonas Sp. Js666
To Be Published
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Hetero Components
(4, 35)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
1o: ACETATE ION (ACTo)
1p: ACETATE ION (ACTp)
2a: CHLORIDE ION (CLa)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
3e: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEe)
3f: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEf)
3g: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEg)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: SELENOMETHIONINE (MSEa)
5aa: SELENOMETHIONINE (MSEaa)
5ab: SELENOMETHIONINE (MSEab)
5ac: SELENOMETHIONINE (MSEac)
5ad: SELENOMETHIONINE (MSEad)
5ae: SELENOMETHIONINE (MSEae)
5af: SELENOMETHIONINE (MSEaf)
5ag: SELENOMETHIONINE (MSEag)
5ah: SELENOMETHIONINE (MSEah)
5ai: SELENOMETHIONINE (MSEai)
5aj: SELENOMETHIONINE (MSEaj)
5ak: SELENOMETHIONINE (MSEak)
5al: SELENOMETHIONINE (MSEal)
5am: SELENOMETHIONINE (MSEam)
5an: SELENOMETHIONINE (MSEan)
5ao: SELENOMETHIONINE (MSEao)
5ap: SELENOMETHIONINE (MSEap)
5aq: SELENOMETHIONINE (MSEaq)
5ar: SELENOMETHIONINE (MSEar)
5as: SELENOMETHIONINE (MSEas)
5at: SELENOMETHIONINE (MSEat)
5au: SELENOMETHIONINE (MSEau)
5av: SELENOMETHIONINE (MSEav)
5aw: SELENOMETHIONINE (MSEaw)
5ax: SELENOMETHIONINE (MSEax)
5ay: SELENOMETHIONINE (MSEay)
5az: SELENOMETHIONINE (MSEaz)
5b: SELENOMETHIONINE (MSEb)
5ba: SELENOMETHIONINE (MSEba)
5bb: SELENOMETHIONINE (MSEbb)
5bc: SELENOMETHIONINE (MSEbc)
5bd: SELENOMETHIONINE (MSEbd)
5be: SELENOMETHIONINE (MSEbe)
5bf: SELENOMETHIONINE (MSEbf)
5bg: SELENOMETHIONINE (MSEbg)
5bh: SELENOMETHIONINE (MSEbh)
5bi: SELENOMETHIONINE (MSEbi)
5bj: SELENOMETHIONINE (MSEbj)
5bk: SELENOMETHIONINE (MSEbk)
5bl: SELENOMETHIONINE (MSEbl)
5bm: SELENOMETHIONINE (MSEbm)
5bn: SELENOMETHIONINE (MSEbn)
5bo: SELENOMETHIONINE (MSEbo)
5bp: SELENOMETHIONINE (MSEbp)
5bq: SELENOMETHIONINE (MSEbq)
5br: SELENOMETHIONINE (MSEbr)
5bs: SELENOMETHIONINE (MSEbs)
5bt: SELENOMETHIONINE (MSEbt)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
5w: SELENOMETHIONINE (MSEw)
5x: SELENOMETHIONINE (MSEx)
5y: SELENOMETHIONINE (MSEy)
5z: SELENOMETHIONINE (MSEz)
6a: SULFATE ION (SO4a)
6aa: SULFATE ION (SO4aa)
6ab: SULFATE ION (SO4ab)
6ac: SULFATE ION (SO4ac)
6ad: SULFATE ION (SO4ad)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
6u: SULFATE ION (SO4u)
6v: SULFATE ION (SO4v)
6w: SULFATE ION (SO4w)
6x: SULFATE ION (SO4x)
6y: SULFATE ION (SO4y)
6z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
GOL
-1
Ligand/Ion
GLYCEROL
5
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
6
SO4
11
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC6 (SOFTWARE)
11: DC7 (SOFTWARE)
12: DC8 (SOFTWARE)
13: EC1 (SOFTWARE)
14: EC3 (SOFTWARE)
15: EC5 (SOFTWARE)
16: FC5 (SOFTWARE)
17: FC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
PRO G:25 , ASP G:26 , LYS G:27 , HOH G:1097 , THR H:239 , THR H:240 , LYS H:242
BINDING SITE FOR RESIDUE EPE G 400
02
AC7
SOFTWARE
THR G:239 , THR G:240 , LYS G:242 , PRO H:25 , ASP H:26 , LYS H:27
BINDING SITE FOR RESIDUE EPE G 349
03
BC2
SOFTWARE
ARG H:42 , ARG H:45 , HOH H:933
BINDING SITE FOR RESIDUE SO4 H 349
04
BC7
SOFTWARE
PHE G:23 , PRO G:62 , ARG G:166 , ASN G:167
BINDING SITE FOR RESIDUE SO4 G 350
05
BC8
SOFTWARE
ARG G:42 , ARG G:45 , ACT G:356 , HOH G:1317
BINDING SITE FOR RESIDUE SO4 G 351
06
BC9
SOFTWARE
ARG G:174 , LEU H:169 , SER H:171 , HOH H:546
BINDING SITE FOR RESIDUE SO4 H 350
07
CC7
SOFTWARE
ARG H:78 , ARG H:115
BINDING SITE FOR RESIDUE SO4 H 351
08
CC8
SOFTWARE
ARG G:247 , ASP G:251 , HOH G:1110
BINDING SITE FOR RESIDUE SO4 G 352
09
DC4
SOFTWARE
ARG H:42 , ARG H:45
BINDING SITE FOR RESIDUE SO4 H 352
10
DC6
SOFTWARE
PHE H:23 , PRO H:62 , ARG H:166 , ASN H:167 , PHE H:189 , HOH H:718
BINDING SITE FOR RESIDUE SO4 H 353
11
DC7
SOFTWARE
GLN G:132 , HOH G:451 , HOH G:1166
BINDING SITE FOR RESIDUE SO4 G 353
12
DC8
SOFTWARE
ARG G:78 , ARG G:115
BINDING SITE FOR RESIDUE SO4 G 354
13
EC1
SOFTWARE
ARG D:78 , LYS G:323 , ARG G:326
BINDING SITE FOR RESIDUE SO4 G 355
14
EC3
SOFTWARE
LEU G:46 , TRP G:288 , ASN G:292 , ILE G:293 , ASP G:294 , SO4 G:351 , HOH G:1317
BINDING SITE FOR RESIDUE ACT G 356
15
EC5
SOFTWARE
TRP H:288 , ASN H:292 , ILE H:293 , ASP H:294 , HOH H:933
BINDING SITE FOR RESIDUE ACT H 354
16
FC5
SOFTWARE
HIS G:295 , HOH G:1044 , LYS H:238
BINDING SITE FOR RESIDUE ACT G 357
17
FC6
SOFTWARE
HIS G:232
BINDING SITE FOR RESIDUE ACT G 358
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3s4ta_ (A:)
1b: SCOP_d3s4tb_ (B:)
1c: SCOP_d3s4tc_ (C:)
1d: SCOP_d3s4td_ (D:)
1e: SCOP_d3s4te_ (E:)
1f: SCOP_d3s4tf_ (F:)
1g: SCOP_d3s4tg_ (G:)
1h: SCOP_d3s4th_ (H:)
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Classes
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
PP1699/LP2961-like
(17)
Protein domain
:
automated matches
(1)
Polaromonas sp. [TaxId: 296591]
(1)
1a
d3s4ta_
A:
1b
d3s4tb_
B:
1c
d3s4tc_
C:
1d
d3s4td_
D:
1e
d3s4te_
E:
1f
d3s4tf_
F:
1g
d3s4tg_
G:
1h
d3s4th_
H:
[
close SCOP info
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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