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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS FOR CATALYTIC ACTIVATION OF A SERINE RECOMB
Keywords SMALL SERINE RECOMBINASE, RESOLVASE, DNA, RECOMBINATION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3PKZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RECOMBINASE SIN  A 124 1004 0
2  Protein   RECOMBINASE SIN  B 124 1004 0
3  Protein   RECOMBINASE SIN  C 124 1004 0
4  Protein   RECOMBINASE SIN  D 124 1004 0
5  Protein   RECOMBINASE SIN  E 124 1004 0
6  Protein   RECOMBINASE SIN  F 124 1004 0
7  Protein   RECOMBINASE SIN  G 122 988 0
8  Protein   RECOMBINASE SIN  H 124 1004 0
9  Protein   RECOMBINASE SIN  I 124 1004 0
10  Protein   RECOMBINASE SIN  J 124 1004 0
11  Protein   RECOMBINASE SIN  K 124 1004 0
12  Protein   RECOMBINASE SIN  L 124 1004 0
13  Ligand   RECOMBINASE SIN  A 2 0 10
14  Ligand   RECOMBINASE SIN  B 1 0 5
15  Ligand   RECOMBINASE SIN  C 2 0 10
16  Ligand   RECOMBINASE SIN  D 2 0 10
17  Ligand   RECOMBINASE SIN  E 2 0 10
18  Ligand   RECOMBINASE SIN  F 1 0 5
19  Ligand   RECOMBINASE SIN  G 1 0 5
20  Ligand   RECOMBINASE SIN  H 3 0 14
21  Ligand   RECOMBINASE SIN  I 5 0 25
22  Ligand   RECOMBINASE SIN  J 1 0 5
23  Ligand   RECOMBINASE SIN  K 2 0 11
24  Ligand   RECOMBINASE SIN  L 2 0 10
25 Water     890 0 890
total       2400 12032 1010
Proteins
Unit 1 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 2 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 3 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 4 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 5 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 6 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 7 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 8 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 9 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 10 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 11 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Unit 12 MET1 ILE2 ILE3 GLY4 TYR5 ALA6 ARG7 VAL8 SER9 SER10 LEU11 ASP12 GLN13 ASN14 LEU15 GLU16 ARG17 GLN18 LEU19 GLU20 ASN21 LEU22 LYS23 THR24 PHE25 GLY26 ALA27 GLU28 LYS29 ILE30 PHE31 THR32 GLU33 LYS34 GLN35 SER36 GLY37 LYS38 SER39 ILE40 GLU41 ASN42 ARG43 PRO44 ILE45 LEU46 GLN47 LYS48 ALA49 LEU50 ASN51 PHE52 VAL53 GLU54 MET55 GLY56 ASP57 ARG58 PHE59 ILE60 VAL61 GLU62 SER63 ILE64 ASP65 ARG66 LEU67 GLY68 ARG69 ASN70 TYR71 ASN72 GLU73 VAL74 ILE75 HIS76 THR77 VAL78 ASN79 TYR80 LEU81 LYS82 ASP83 LYS84 GLU85 VAL86 GLN87 LEU88 MET89 ILE90 THR91 SER92 LEU93 PRO94 MET95 MET96 ASN97 GLU98 VAL99 ILE100 GLY101 ASN102 PRO103 LEU104 LEU105 ASP106 LYS107 PHE108 MET109 LYS110 ASP111 LEU112 ILE113 ILE114 ARG115 ILE116 LEU117 ALA118 MET119 VAL120 SER121 GLU122 GLN123 GLU124
Ligands
Unit 13 SO4125 SO4126
Unit 14 SO4125
Unit 15 SO4125 SO4126
Unit 16 SO4125 SO4126
Unit 17 SO4125 SO4126
Unit 18 SO4125
Unit 19 SO4125
Unit 20 SO4125 SO4126 EDO127
Unit 21 SO4125 SO4126 SO4127 GOL128 EDO129
Unit 22 SO4125
Unit 23 SO4125 GOL126
Unit 24 SO4125 SO4126
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany