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(-) Description

Title :  CRYSTAL STRUCTURE OF A FORMYLTETRAHYDROFOLATE DEFORMYLASE (NP_949368) FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 AT 1.95 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  06 Aug 10  (Deposition) - 18 Aug 10  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,D  (1x)
Biol. Unit 3:  B,C  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1. 95 Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FORMYLTETRAHYDROFOLATE DEFORMYLASE
    Chains: A, B, C, D
    EC Number: 3.5.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PURU, RPA4032
    Organism Common: TBD
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 258594
    Strain: CGA009

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): A  D
Biological Unit 3 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 57)

Asymmetric Unit (2, 57)
No.NameCountTypeFull Name
1EDO29Ligand/Ion1,2-ETHANEDIOL
2MSE28Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 57)
No.NameCountTypeFull Name
1EDO29Ligand/Ion1,2-ETHANEDIOL
2MSE28Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 25)
No.NameCountTypeFull Name
1EDO11Ligand/Ion1,2-ETHANEDIOL
2MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 32)
No.NameCountTypeFull Name
1EDO18Ligand/Ion1,2-ETHANEDIOL
2MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:107 , ARG A:110 , ASP A:134 , HOH A:759 , GLY B:132BINDING SITE FOR RESIDUE EDO A 300
02AC2SOFTWAREARG A:253 , ASP A:257 , ARG A:260 , HOH A:1077 , HOH A:1209 , ASP B:113BINDING SITE FOR RESIDUE EDO A 305
03AC3SOFTWAREARG A:89 , HIS A:270 , ASP A:273 , ARG A:274 , VAL A:275BINDING SITE FOR RESIDUE EDO A 308
04AC4SOFTWARETHR A:87 , ARG A:88 , ARG A:89 , HIS A:115 , LEU A:271 , HOH A:618BINDING SITE FOR RESIDUE EDO A 309
05AC5SOFTWARESER A:11 , HIS A:46 , LEU A:277 , ASN A:278 , GLY A:279BINDING SITE FOR RESIDUE EDO A 310
06AC6SOFTWAREPRO A:144 , GLN A:153 , HOH A:702 , HOH A:1328 , HIS D:142BINDING SITE FOR RESIDUE EDO A 311
07AC7SOFTWAREARG A:127 , GLU A:128 , HOH A:1270 , ASN D:146BINDING SITE FOR RESIDUE EDO A 320
08AC8SOFTWAREALA A:249 , HOH A:906 , HOH A:1277BINDING SITE FOR RESIDUE EDO A 327
09AC9SOFTWAREPHE B:143 , HOH B:403 , HOH B:1075 , HOH B:1094 , ASP C:137BINDING SITE FOR RESIDUE EDO B 301
10BC1SOFTWAREASP B:99 , THR B:129 , PHE B:130 , SER B:131 , HOH B:1137 , HOH B:1174BINDING SITE FOR RESIDUE EDO B 304
11BC2SOFTWAREHIS B:268 , TYR B:269 , ASP B:287 , HOH B:1033BINDING SITE FOR RESIDUE EDO B 307
12BC3SOFTWAREHIS B:194 , SER B:196 , THR B:221 , LEU D:198 , PRO D:199BINDING SITE FOR RESIDUE EDO B 312
13BC4SOFTWAREARG B:66 , TRP B:80 , HIS B:81 , MSE B:82 , HOH B:932 , HOH B:1120 , HOH B:1241BINDING SITE FOR RESIDUE EDO B 313
14BC5SOFTWAREASP B:137 , HOH B:548 , HOH B:658 , HOH B:1103 , PHE C:143BINDING SITE FOR RESIDUE EDO B 319
15BC6SOFTWAREASP B:238 , ARG B:261 , ARG B:265 , HOH B:797BINDING SITE FOR RESIDUE EDO B 322
16BC7SOFTWAREHIS B:208 , ASP B:212 , GLU D:43BINDING SITE FOR RESIDUE EDO B 326
17BC8SOFTWAREARG B:89 , HIS B:270 , ASP B:273 , ARG B:274 , VAL B:275BINDING SITE FOR RESIDUE EDO B 328
18BC9SOFTWAREARG C:66 , TRP C:80 , HIS C:81 , MSE C:82 , HOH C:736 , HOH C:1216BINDING SITE FOR RESIDUE EDO C 302
19CC1SOFTWARELEU A:198 , PRO A:199 , HIS C:194 , SER C:196 , THR C:221 , HOH C:1045BINDING SITE FOR RESIDUE EDO C 306
20CC2SOFTWARELEU C:106 , ARG C:110 , ASP C:134 , EDO D:318BINDING SITE FOR RESIDUE EDO C 314
21CC3SOFTWARETHR C:9 , ARG C:89 , HIS C:270 , ASP C:273 , ARG C:274 , VAL C:275BINDING SITE FOR RESIDUE EDO C 316
22CC4SOFTWAREASP C:113 , LEU C:114 , ARG C:265 , HOH C:1061BINDING SITE FOR RESIDUE EDO C 317
23CC5SOFTWAREPRO A:248 , HOH A:585 , GLU C:43 , HOH C:696BINDING SITE FOR RESIDUE EDO C 321
24CC6SOFTWAREASN C:29 , SER C:64 , GLY C:68BINDING SITE FOR RESIDUE EDO C 323
25CC7SOFTWAREARG C:89 , ASP C:167 , HIS C:270 , HOH C:1178BINDING SITE FOR RESIDUE EDO C 324
26CC8SOFTWAREILE C:177 , LEU C:178 , ASP C:230 , HOH C:526BINDING SITE FOR RESIDUE EDO C 325
27CC9SOFTWAREHIS A:142 , PRO D:144BINDING SITE FOR RESIDUE EDO D 303
28DC1SOFTWAREARG D:89 , HIS D:270 , ASP D:273 , ARG D:274 , VAL D:275BINDING SITE FOR RESIDUE EDO D 315
29DC2SOFTWAREARG C:110 , GLY C:132 , EDO C:314 , TYR D:107 , ARG D:110 , ASP D:134 , HOH D:555BINDING SITE FOR RESIDUE EDO D 318

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OBI)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:198 -Pro A:199
2Leu B:198 -Pro B:199
3Leu C:198 -Pro C:199
4Leu D:198 -Pro D:199

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OBI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OBI)

(-) Exons   (0, 0)

(no "Exon" information available for 3OBI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
 aligned with Q6N2L8_RHOPA | Q6N2L8 from UniProtKB/TrEMBL  Length:287

    Alignment length:285
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282     
         Q6N2L8_RHOPA     3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFTD 287
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee...hhhhhhhhhhhhh.eeeeeeeeeee....eeeeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee....eeeeeee...hhhhhhhhhhhhh....eeeeeeee..hhhhh.........eee......hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhh...eeeeeee........hhhhhhhhhh..eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3obi A   3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFmRVVFNAAAKVIPLASLRTGFGVIAAKFTmGWHmRDRETRRKVmLLVSQSDHCLADILYRWRVGDLHmIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYmQILSDEmSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFTD 287
                                    12        22        32        42      | 52        62        72     |  82        92       102       112   |   122       132       142       152       162       172  |    182       192       202       212       222       232       242       252       262       272       282     
                                                                         49-MSE                       78-MSE        92-MSE                 116-MSE                                                    175-MSE  |                                                                                                         
                                                                                                          82-MSE                                                                                             182-MSE                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:285
 aligned with Q6N2L8_RHOPA | Q6N2L8 from UniProtKB/TrEMBL  Length:287

    Alignment length:285
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282     
         Q6N2L8_RHOPA     3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFTD 287
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee...hhhhhhhhhhhhh.eeeeeeeeeee....eeeeeeeeee.....hhhhhhhhhhhhhhhhh.eeeeee....eeeeeee...hhhhhhhhhhhhh....eeeeeeee..hhhhh.........eee......hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh...eeeeeee........hhhhhhhhhh..eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3obi B   3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFmRVVFNAAAKVIPLASLRTGFGVIAAKFTmGWHmRDRETRRKVmLLVSQSDHCLADILYRWRVGDLHmIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYmQILSDEmSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFTD 287
                                    12        22        32        42      | 52        62        72     |  82        92       102       112   |   122       132       142       152       162       172  |    182       192       202       212       222       232       242       252       262       272       282     
                                                                         49-MSE                       78-MSE        92-MSE                 116-MSE                                                    175-MSE  |                                                                                                         
                                                                                                          82-MSE                                                                                             182-MSE                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:284
 aligned with Q6N2L8_RHOPA | Q6N2L8 from UniProtKB/TrEMBL  Length:287

    Alignment length:284
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282    
         Q6N2L8_RHOPA     3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT 286
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee...hhhhhhhhhhhhh.eeeeeeeeeee....eeeeeeeeee.....hhhhhhhhhhhhhhhhh.eeeeee....eeeeeee...hhhhhhhhhhhhh....eeeeeeee..hhhhh.........eee......hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh...eeeeeee........hhhhhhhhhh..eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3obi C   3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFmRVVFNAAAKVIPLASLRTGFGVIAAKFTmGWHmRDRETRRKVmLLVSQSDHCLADILYRWRVGDLHmIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYmQILSDEmSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT 286
                                    12        22        32        42      | 52        62        72     |  82        92       102       112   |   122       132       142       152       162       172  |    182       192       202       212       222       232       242       252       262       272       282    
                                                                         49-MSE                       78-MSE        92-MSE                 116-MSE                                                    175-MSE  |                                                                                                        
                                                                                                          82-MSE                                                                                             182-MSE                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:284
 aligned with Q6N2L8_RHOPA | Q6N2L8 from UniProtKB/TrEMBL  Length:287

    Alignment length:284
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282    
         Q6N2L8_RHOPA     3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT 286
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---ACT-3obiD01 D:6-60                                     ----------------------------Formyl_trans_N-3obiD05 D:89-267                                                                                                                                                    ------------------- Pfam domains (1)
           Pfam domains (2) ---ACT-3obiD02 D:6-60                                     ----------------------------Formyl_trans_N-3obiD06 D:89-267                                                                                                                                                    ------------------- Pfam domains (2)
           Pfam domains (3) ---ACT-3obiD03 D:6-60                                     ----------------------------Formyl_trans_N-3obiD07 D:89-267                                                                                                                                                    ------------------- Pfam domains (3)
           Pfam domains (4) ---ACT-3obiD04 D:6-60                                     ----------------------------Formyl_trans_N-3obiD08 D:89-267                                                                                                                                                    ------------------- Pfam domains (4)
         Sec.struct. author ..eeeeeeeee...hhhhhhhhhhhhh.eeeeeeeeeee....eeeeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee....eeeeeee...hhhhhhhhhhhhh....eeeeeeee..hhhhh.........eee......hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh...eeeeeee........hhhhhhhhhh..eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3obi D   3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFmRVVFNAAAKVIPLASLRTGFGVIAAKFTmGWHmRDRETRRKVmLLVSQSDHCLADILYRWRVGDLHmIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYmQILSDEmSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT 286
                                    12        22        32        42      | 52        62        72     |  82        92       102       112   |   122       132       142       152       162       172  |    182       192       202       212       222       232       242       252       262       272       282    
                                                                         49-MSE                       78-MSE        92-MSE                 116-MSE                                                    175-MSE  |                                                                                                        
                                                                                                          82-MSE                                                                                             182-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OBI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OBI)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: ACT (34)
(-)
Clan: no clan defined [family: Formyl_trans_N] (25)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q6N2L8_RHOPA | Q6N2L8)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0008864    formyltetrahydrofolate deformylase activity    Catalysis of the reaction: 10-formyltetrahydrofolate + H(2)O = (6S)-5,6,7,8-tetrahydrofolate + formate + H(+).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016742    hydroxymethyl-, formyl- and related transferase activity    Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
biological process
    GO:0006189    'de novo' IMP biosynthetic process    The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006730    one-carbon metabolic process    The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
    GO:0006164    purine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

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