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3OBI
Biol. Unit 3
Info
Asym.Unit (417 KB)
Biol.Unit 1 (408 KB)
Biol.Unit 2 (207 KB)
Biol.Unit 3 (206 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A FORMYLTETRAHYDROFOLATE DEFORMYLASE (NP_949368) FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 AT 1.95 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
06 Aug 10 (Deposition) - 18 Aug 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,D (1x)
Biol. Unit 3: B,C (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1. 95 Resolution
To Be Published
[
close entry info
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Hetero Components
(2, 32)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC2 (SOFTWARE)
15: CC3 (SOFTWARE)
16: CC4 (SOFTWARE)
17: CC5 (SOFTWARE)
18: CC6 (SOFTWARE)
19: CC7 (SOFTWARE)
20: CC8 (SOFTWARE)
21: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:107 , ARG A:110 , ASP A:134 , HOH A:759 , GLY B:132
BINDING SITE FOR RESIDUE EDO A 300
02
AC2
SOFTWARE
ARG A:253 , ASP A:257 , ARG A:260 , HOH A:1077 , HOH A:1209 , ASP B:113
BINDING SITE FOR RESIDUE EDO A 305
03
AC9
SOFTWARE
PHE B:143 , HOH B:403 , HOH B:1075 , HOH B:1094 , ASP C:137
BINDING SITE FOR RESIDUE EDO B 301
04
BC1
SOFTWARE
ASP B:99 , THR B:129 , PHE B:130 , SER B:131 , HOH B:1137 , HOH B:1174
BINDING SITE FOR RESIDUE EDO B 304
05
BC2
SOFTWARE
HIS B:268 , TYR B:269 , ASP B:287 , HOH B:1033
BINDING SITE FOR RESIDUE EDO B 307
06
BC3
SOFTWARE
HIS B:194 , SER B:196 , THR B:221 , LEU D:198 , PRO D:199
BINDING SITE FOR RESIDUE EDO B 312
07
BC4
SOFTWARE
ARG B:66 , TRP B:80 , HIS B:81 , MSE B:82 , HOH B:932 , HOH B:1120 , HOH B:1241
BINDING SITE FOR RESIDUE EDO B 313
08
BC5
SOFTWARE
ASP B:137 , HOH B:548 , HOH B:658 , HOH B:1103 , PHE C:143
BINDING SITE FOR RESIDUE EDO B 319
09
BC6
SOFTWARE
ASP B:238 , ARG B:261 , ARG B:265 , HOH B:797
BINDING SITE FOR RESIDUE EDO B 322
10
BC7
SOFTWARE
HIS B:208 , ASP B:212 , GLU D:43
BINDING SITE FOR RESIDUE EDO B 326
11
BC8
SOFTWARE
ARG B:89 , HIS B:270 , ASP B:273 , ARG B:274 , VAL B:275
BINDING SITE FOR RESIDUE EDO B 328
12
BC9
SOFTWARE
ARG C:66 , TRP C:80 , HIS C:81 , MSE C:82 , HOH C:736 , HOH C:1216
BINDING SITE FOR RESIDUE EDO C 302
13
CC1
SOFTWARE
LEU A:198 , PRO A:199 , HIS C:194 , SER C:196 , THR C:221 , HOH C:1045
BINDING SITE FOR RESIDUE EDO C 306
14
CC2
SOFTWARE
LEU C:106 , ARG C:110 , ASP C:134 , EDO D:318
BINDING SITE FOR RESIDUE EDO C 314
15
CC3
SOFTWARE
THR C:9 , ARG C:89 , HIS C:270 , ASP C:273 , ARG C:274 , VAL C:275
BINDING SITE FOR RESIDUE EDO C 316
16
CC4
SOFTWARE
ASP C:113 , LEU C:114 , ARG C:265 , HOH C:1061
BINDING SITE FOR RESIDUE EDO C 317
17
CC5
SOFTWARE
PRO A:248 , HOH A:585 , GLU C:43 , HOH C:696
BINDING SITE FOR RESIDUE EDO C 321
18
CC6
SOFTWARE
ASN C:29 , SER C:64 , GLY C:68
BINDING SITE FOR RESIDUE EDO C 323
19
CC7
SOFTWARE
ARG C:89 , ASP C:167 , HIS C:270 , HOH C:1178
BINDING SITE FOR RESIDUE EDO C 324
20
CC8
SOFTWARE
ILE C:177 , LEU C:178 , ASP C:230 , HOH C:526
BINDING SITE FOR RESIDUE EDO C 325
21
DC2
SOFTWARE
ARG C:110 , GLY C:132 , EDO C:314 , TYR D:107 , ARG D:110 , ASP D:134 , HOH D:555
BINDING SITE FOR RESIDUE EDO D 318
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_ACT_3obiD01 (D:6-60)
1b: PFAM_ACT_3obiD02 (D:6-60)
1c: PFAM_ACT_3obiD03 (D:6-60)
1d: PFAM_ACT_3obiD04 (D:6-60)
2a: PFAM_Formyl_trans_N_3obiD05 (D:89-267)
2b: PFAM_Formyl_trans_N_3obiD06 (D:89-267)
2c: PFAM_Formyl_trans_N_3obiD07 (D:89-267)
2d: PFAM_Formyl_trans_N_3obiD08 (D:89-267)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ACT
(34)
Family
:
ACT
(19)
Rhodopseudomonas palustris
(1)
1a
ACT-3obiD01
D:6-60
1b
ACT-3obiD02
D:6-60
1c
ACT-3obiD03
D:6-60
1d
ACT-3obiD04
D:6-60
Clan
:
no clan defined [family: Formyl_trans_N]
(25)
Family
:
Formyl_trans_N
(25)
Rhodopseudomonas palustris
(1)
2a
Formyl_trans_N-3obiD05
D:89-267
2b
Formyl_trans_N-3obiD06
D:89-267
2c
Formyl_trans_N-3obiD07
D:89-267
2d
Formyl_trans_N-3obiD08
D:89-267
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