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3OBI
Asym. Unit
Info
Asym.Unit (417 KB)
Biol.Unit 1 (408 KB)
Biol.Unit 2 (207 KB)
Biol.Unit 3 (206 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A FORMYLTETRAHYDROFOLATE DEFORMYLASE (NP_949368) FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 AT 1.95 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
06 Aug 10 (Deposition) - 18 Aug 10 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,D (1x)
Biol. Unit 3: B,C (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1. 95 Resolution
To Be Published
[
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Hetero Components
(2, 57)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
29
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:107 , ARG A:110 , ASP A:134 , HOH A:759 , GLY B:132
BINDING SITE FOR RESIDUE EDO A 300
02
AC2
SOFTWARE
ARG A:253 , ASP A:257 , ARG A:260 , HOH A:1077 , HOH A:1209 , ASP B:113
BINDING SITE FOR RESIDUE EDO A 305
03
AC3
SOFTWARE
ARG A:89 , HIS A:270 , ASP A:273 , ARG A:274 , VAL A:275
BINDING SITE FOR RESIDUE EDO A 308
04
AC4
SOFTWARE
THR A:87 , ARG A:88 , ARG A:89 , HIS A:115 , LEU A:271 , HOH A:618
BINDING SITE FOR RESIDUE EDO A 309
05
AC5
SOFTWARE
SER A:11 , HIS A:46 , LEU A:277 , ASN A:278 , GLY A:279
BINDING SITE FOR RESIDUE EDO A 310
06
AC6
SOFTWARE
PRO A:144 , GLN A:153 , HOH A:702 , HOH A:1328 , HIS D:142
BINDING SITE FOR RESIDUE EDO A 311
07
AC7
SOFTWARE
ARG A:127 , GLU A:128 , HOH A:1270 , ASN D:146
BINDING SITE FOR RESIDUE EDO A 320
08
AC8
SOFTWARE
ALA A:249 , HOH A:906 , HOH A:1277
BINDING SITE FOR RESIDUE EDO A 327
09
AC9
SOFTWARE
PHE B:143 , HOH B:403 , HOH B:1075 , HOH B:1094 , ASP C:137
BINDING SITE FOR RESIDUE EDO B 301
10
BC1
SOFTWARE
ASP B:99 , THR B:129 , PHE B:130 , SER B:131 , HOH B:1137 , HOH B:1174
BINDING SITE FOR RESIDUE EDO B 304
11
BC2
SOFTWARE
HIS B:268 , TYR B:269 , ASP B:287 , HOH B:1033
BINDING SITE FOR RESIDUE EDO B 307
12
BC3
SOFTWARE
HIS B:194 , SER B:196 , THR B:221 , LEU D:198 , PRO D:199
BINDING SITE FOR RESIDUE EDO B 312
13
BC4
SOFTWARE
ARG B:66 , TRP B:80 , HIS B:81 , MSE B:82 , HOH B:932 , HOH B:1120 , HOH B:1241
BINDING SITE FOR RESIDUE EDO B 313
14
BC5
SOFTWARE
ASP B:137 , HOH B:548 , HOH B:658 , HOH B:1103 , PHE C:143
BINDING SITE FOR RESIDUE EDO B 319
15
BC6
SOFTWARE
ASP B:238 , ARG B:261 , ARG B:265 , HOH B:797
BINDING SITE FOR RESIDUE EDO B 322
16
BC7
SOFTWARE
HIS B:208 , ASP B:212 , GLU D:43
BINDING SITE FOR RESIDUE EDO B 326
17
BC8
SOFTWARE
ARG B:89 , HIS B:270 , ASP B:273 , ARG B:274 , VAL B:275
BINDING SITE FOR RESIDUE EDO B 328
18
BC9
SOFTWARE
ARG C:66 , TRP C:80 , HIS C:81 , MSE C:82 , HOH C:736 , HOH C:1216
BINDING SITE FOR RESIDUE EDO C 302
19
CC1
SOFTWARE
LEU A:198 , PRO A:199 , HIS C:194 , SER C:196 , THR C:221 , HOH C:1045
BINDING SITE FOR RESIDUE EDO C 306
20
CC2
SOFTWARE
LEU C:106 , ARG C:110 , ASP C:134 , EDO D:318
BINDING SITE FOR RESIDUE EDO C 314
21
CC3
SOFTWARE
THR C:9 , ARG C:89 , HIS C:270 , ASP C:273 , ARG C:274 , VAL C:275
BINDING SITE FOR RESIDUE EDO C 316
22
CC4
SOFTWARE
ASP C:113 , LEU C:114 , ARG C:265 , HOH C:1061
BINDING SITE FOR RESIDUE EDO C 317
23
CC5
SOFTWARE
PRO A:248 , HOH A:585 , GLU C:43 , HOH C:696
BINDING SITE FOR RESIDUE EDO C 321
24
CC6
SOFTWARE
ASN C:29 , SER C:64 , GLY C:68
BINDING SITE FOR RESIDUE EDO C 323
25
CC7
SOFTWARE
ARG C:89 , ASP C:167 , HIS C:270 , HOH C:1178
BINDING SITE FOR RESIDUE EDO C 324
26
CC8
SOFTWARE
ILE C:177 , LEU C:178 , ASP C:230 , HOH C:526
BINDING SITE FOR RESIDUE EDO C 325
27
CC9
SOFTWARE
HIS A:142 , PRO D:144
BINDING SITE FOR RESIDUE EDO D 303
28
DC1
SOFTWARE
ARG D:89 , HIS D:270 , ASP D:273 , ARG D:274 , VAL D:275
BINDING SITE FOR RESIDUE EDO D 315
29
DC2
SOFTWARE
ARG C:110 , GLY C:132 , EDO C:314 , TYR D:107 , ARG D:110 , ASP D:134 , HOH D:555
BINDING SITE FOR RESIDUE EDO D 318
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_ACT_3obiD01 (D:6-60)
1b: PFAM_ACT_3obiD02 (D:6-60)
1c: PFAM_ACT_3obiD03 (D:6-60)
1d: PFAM_ACT_3obiD04 (D:6-60)
2a: PFAM_Formyl_trans_N_3obiD05 (D:89-267)
2b: PFAM_Formyl_trans_N_3obiD06 (D:89-267)
2c: PFAM_Formyl_trans_N_3obiD07 (D:89-267)
2d: PFAM_Formyl_trans_N_3obiD08 (D:89-267)
View:
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Clans
(
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(
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(
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(
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Organisms
(
)
(
)
Clan
:
ACT
(34)
Family
:
ACT
(19)
Rhodopseudomonas palustris
(1)
1a
ACT-3obiD01
D:6-60
1b
ACT-3obiD02
D:6-60
1c
ACT-3obiD03
D:6-60
1d
ACT-3obiD04
D:6-60
Clan
:
no clan defined [family: Formyl_trans_N]
(25)
Family
:
Formyl_trans_N
(25)
Rhodopseudomonas palustris
(1)
2a
Formyl_trans_N-3obiD05
D:89-267
2b
Formyl_trans_N-3obiD06
D:89-267
2c
Formyl_trans_N-3obiD07
D:89-267
2d
Formyl_trans_N-3obiD08
D:89-267
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