3N55 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Title :   SO1698 PROTEIN, AN ASPARTIC PEPTIDASE FROM SHEWANELLA ONEIDENSIS.

Authors :   J. Osipiuk, R. Mulligan, F. Collart, A. Joachimiak, Midwest Center F Structural Genomics (Mcsg)

Date :   24 May 10 (Deposition) - 02 Jun 10 (Release) - 31 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.57

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (6x)
Biol. Unit 2: A,B  (2x)
Biol. Unit 3: A,B  (2x)
Biol. Unit 4: A,B  (1x)
Biol. Unit 5: A  (6x)
Biol. Unit 6: A  (2x)
Biol. Unit 7: A  (2x)

Keywords :   Structural Genomics, Aspartic Peptidase, Autocatalysis, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Osipiuk, R. Mulligan, M. Bargassa, J. E. Hamilton, M. A. Cunningham A. Joachimiak
Characterization Of Member Of Duf1888 Protein Family, Self-Cleaving And Self-Assembling Endopeptidase.
J. Biol. Chem. V. 287 19452 2012
PubMed-ID: 22493430 | Reference-DOI: 10.1074/JBC.M112.358069

Molecule 1 - PEPTIDASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL DOMAIN 1-116
	Gene	:	SO_1698
	Organism Scientific	:	SHEWANELLA ONEIDENSIS
	Organism Taxid	:	70863
	Strain	:	MR-1

Molecule 2 - PEPTIDASE
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL DOMAIN 117-125
	Gene	:	SO_1698
	Organism Scientific	:	SHEWANELLA ONEIDENSIS
	Organism Taxid	:	70863
	Strain	:	MR-1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (6x)	:	A	B
Biological Unit 2 (2x)	:	A	B
Biological Unit 3 (2x)	:	A	B
Biological Unit 4 (1x)	:	A	B
Biological Unit 5 (6x)	:	A
Biological Unit 6 (2x)	:	A
Biological Unit 7 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 4)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
3	MSE	1	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 18)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	BME	6	Ligand/Ion	BETA-MERCAPTOETHANOL
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (3, 3)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
3	MSE	1	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (3, 18)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	BME	6	Ligand/Ion	BETA-MERCAPTOETHANOL
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (3, 6)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 7 (3, 6)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (143, 143)

No.	Name	Evidence	Residues	Description
001	AC1	SOFTWARE	CYS A:34 , GLN A:35 , GLY A:36 , ASP A:37 , HOH A:119	BINDING SITE FOR RESIDUE BME A 501
002	AC2	SOFTWARE	ASP A:116 , HOH A:252 , HOH A:253	BINDING SITE FOR RESIDUE ACT A 502
003	AC3	SOFTWARE	GLY A:71 , ASP A:74 , ASP A:91 , THR A:93 , HOH A:244 , HOH A:251	BINDING SITE FOR RESIDUE ZN A 503
004	AC4	SOFTWARE	ASN A:105 , ASN A:108 , THR A:109 , LEU A:110 , HOH A:149	BINDING SITE FOR RESIDUE HOH A 141
005	AC5	SOFTWARE	GLY A:57 , LYS A:59 , SER A:104 , ASN A:105 , HOH A:178	BINDING SITE FOR RESIDUE HOH A 142
006	AC6	SOFTWARE	GLY A:62 , VAL A:63 , VAL A:76 , THR A:109 , LEU A:111 , HOH A:160	BINDING SITE FOR RESIDUE HOH A 143
007	AC7	SOFTWARE	ASP A:74 , ALA A:75 , ASN A:108 , THR A:109 , HOH A:171	BINDING SITE FOR RESIDUE HOH A 144
008	AC8	SOFTWARE	ALA A:8 , GLN A:9 , THR A:45 , THR A:47	BINDING SITE FOR RESIDUE HOH A 145
009	AC9	SOFTWARE	VAL A:76 , SER A:79 , SER A:80 , THR A:109 , HOH A:160	BINDING SITE FOR RESIDUE HOH A 146
010	BC1	SOFTWARE	PRO A:68 , ASP A:70 , GLY A:71 , ILE A:73 , LEU A:110 , HOH A:228	BINDING SITE FOR RESIDUE HOH A 147
011	BC2	SOFTWARE	PHE A:65 , VAL A:66 , THR A:67 , THR A:97 , LYS A:98 , HOH A:219	BINDING SITE FOR RESIDUE HOH A 148
012	BC3	SOFTWARE	SER A:80 , THR A:109 , HOH A:141 , HOH A:160 , HOH A:187	BINDING SITE FOR RESIDUE HOH A 149
013	BC4	SOFTWARE	ASN A:105 , THR A:106 , ASN A:108 , HOH A:156 , HOH A:158 , HOH A:191	BINDING SITE FOR RESIDUE HOH A 150
014	BC5	SOFTWARE	ASP A:52 , GLY A:57 , LEU A:58 , HOH A:157 , HOH A:221	BINDING SITE FOR RESIDUE HOH A 151
015	BC6	SOFTWARE	TYR A:26 , PRO A:115 , HOH A:180 , HOH A:207	BINDING SITE FOR RESIDUE HOH A 152
016	BC7	SOFTWARE	PHE A:65 , ASP A:70 , ILE A:72 , ILE A:73 , LEU A:110	BINDING SITE FOR RESIDUE HOH A 153
017	BC8	SOFTWARE	PHE A:99 , GLN A:100 , SER A:114 , PRO A:115 , PRO B:117	BINDING SITE FOR RESIDUE HOH A 154
018	BC9	SOFTWARE	LYS A:59 , ASP A:81 , HOH A:189 , HOH A:225	BINDING SITE FOR RESIDUE HOH A 155
019	CC1	SOFTWARE	ASP A:81 , ALA A:107 , ASN A:108 , HOH A:150 , HOH A:179	BINDING SITE FOR RESIDUE HOH A 156
020	CC2	SOFTWARE	MSE A:83 , HOH A:151 , HOH A:167 , HOH A:182 , HOH A:243	BINDING SITE FOR RESIDUE HOH A 157
021	CC3	SOFTWARE	SER A:80 , ASP A:81 , HOH A:150 , HOH A:188	BINDING SITE FOR RESIDUE HOH A 158
022	CC4	SOFTWARE	PRO A:22 , PRO A:115 , HOH A:165 , HOH A:169 , HOH A:239	BINDING SITE FOR RESIDUE HOH A 159
023	CC5	SOFTWARE	THR A:109 , HOH A:143 , HOH A:146 , HOH A:149 , HOH A:210	BINDING SITE FOR RESIDUE HOH A 160
024	CC6	SOFTWARE	LYS A:98 , GLN A:100 , HOH A:170 , HOH A:193	BINDING SITE FOR RESIDUE HOH A 161
025	CC7	SOFTWARE	ASP A:52 , LEU A:55 , LYS A:56 , GLY A:57 , HOH A:140 , HOH A:168	BINDING SITE FOR RESIDUE HOH A 162
026	CC8	SOFTWARE	ILE A:25 , TYR A:26 , CYS A:34 , HOH A:136 , HOH A:220	BINDING SITE FOR RESIDUE HOH A 163
027	CC9	SOFTWARE	LYS A:59 , VAL A:61 , SER A:104 , HOH A:173 , HOH A:226	BINDING SITE FOR RESIDUE HOH A 164
028	DC1	SOFTWARE	VAL A:23 , PHE A:24 , PRO A:115 , HOH A:135 , HOH A:159	BINDING SITE FOR RESIDUE HOH A 165
029	DC2	SOFTWARE	PHE A:60 , HOH A:231	BINDING SITE FOR RESIDUE HOH A 166
030	DC3	SOFTWARE	LEU A:50 , ASN A:51 , ASP A:52 , MSE A:83 , HOH A:157 , HOH A:202	BINDING SITE FOR RESIDUE HOH A 167
031	DC4	SOFTWARE	ASP A:52 , GLN A:53 , THR A:54 , LEU A:55 , HOH A:162	BINDING SITE FOR RESIDUE HOH A 168
032	DC5	SOFTWARE	PHE A:24 , VAL A:66 , LEU A:113 , HOH A:159	BINDING SITE FOR RESIDUE HOH A 169
033	DC6	SOFTWARE	VAL A:66 , LYS A:98 , HOH A:161	BINDING SITE FOR RESIDUE HOH A 170
034	DC7	SOFTWARE	ASP A:81 , HOH A:144 , HOH A:222	BINDING SITE FOR RESIDUE HOH A 171
035	DC8	SOFTWARE	GLY A:20 , LYS A:56 , PHE A:69 , HOH A:139 , HOH A:229	BINDING SITE FOR RESIDUE HOH A 172
036	DC9	SOFTWARE	LYS A:59 , HOH A:164 , HOH A:178 , HOH A:209	BINDING SITE FOR RESIDUE HOH A 173
037	EC1	SOFTWARE	VAL A:66 , PRO A:115 , ASP A:116 , HOH A:193 , HOH A:234	BINDING SITE FOR RESIDUE HOH A 174
038	EC2	SOFTWARE	LYS A:12 , THR A:27 , ASP A:28 , GLY A:31	BINDING SITE FOR RESIDUE HOH A 175
039	EC3	SOFTWARE	GLU A:21 , PRO A:22 , VAL A:66 , HOH A:246	BINDING SITE FOR RESIDUE HOH A 176
040	EC4	SOFTWARE	THR A:106 , HOH A:224	BINDING SITE FOR RESIDUE HOH A 177
041	EC5	SOFTWARE	LYS A:59 , THR A:106 , HOH A:132 , HOH A:142 , HOH A:173 , HOH A:227	BINDING SITE FOR RESIDUE HOH A 178
042	EC6	SOFTWARE	THR A:106 , ALA A:107 , HOH A:156 , HOH A:199	BINDING SITE FOR RESIDUE HOH A 179
043	EC7	SOFTWARE	PHE A:24 , HOH A:152	BINDING SITE FOR RESIDUE HOH A 180
044	EC8	SOFTWARE	LEU A:17 , ASN A:19 , GLY A:20	BINDING SITE FOR RESIDUE HOH A 181
045	EC9	SOFTWARE	HOH A:157 , HOH A:189	BINDING SITE FOR RESIDUE HOH A 182
046	FC1	SOFTWARE	ILE A:78 , SER A:79 , SER A:80 , HOH A:190	BINDING SITE FOR RESIDUE HOH A 183
047	FC2	SOFTWARE	LEU A:7 , GLN A:9 , THR A:45	BINDING SITE FOR RESIDUE HOH A 184
048	FC3	SOFTWARE	PHE A:10 , ILE A:11 , ASP A:28 , ALA A:29 , HOH A:254	BINDING SITE FOR RESIDUE HOH A 185
049	FC4	SOFTWARE	GLU A:18 , ASN A:19	BINDING SITE FOR RESIDUE HOH A 186
050	FC5	SOFTWARE	HOH A:149 , HOH A:210 , HOH A:226	BINDING SITE FOR RESIDUE HOH A 187
051	FC6	SOFTWARE	HOH A:158	BINDING SITE FOR RESIDUE HOH A 188
052	FC7	SOFTWARE	HOH A:155 , HOH A:182 , HOH A:221	BINDING SITE FOR RESIDUE HOH A 189
053	FC8	SOFTWARE	ILE A:78 , HOH A:183 , HOH A:210 , HOH A:214	BINDING SITE FOR RESIDUE HOH A 190
054	FC9	SOFTWARE	THR A:106 , HOH A:132 , HOH A:150 , HOH A:249	BINDING SITE FOR RESIDUE HOH A 191
055	GC1	SOFTWARE	GLU A:21 , HOH A:223 , HOH A:232	BINDING SITE FOR RESIDUE HOH A 192
056	GC2	SOFTWARE	HOH A:161 , HOH A:174 , HOH A:253	BINDING SITE FOR RESIDUE HOH A 193
057	GC3	SOFTWARE	GLU A:18	BINDING SITE FOR RESIDUE HOH A 194
058	GC4	SOFTWARE	SER A:79	BINDING SITE FOR RESIDUE HOH A 195
059	GC5	SOFTWARE	ASP A:74 , HOH A:126 , HOH A:138 , HOH A:228	BINDING SITE FOR RESIDUE HOH A 196
060	GC6	SOFTWARE	THR A:106 , ALA A:107	BINDING SITE FOR RESIDUE HOH A 197
061	GC7	SOFTWARE	THR A:16 , LEU A:17 , GLN A:53	BINDING SITE FOR RESIDUE HOH A 198
062	GC8	SOFTWARE	ASP A:81 , HOH A:179	BINDING SITE FOR RESIDUE HOH A 199
063	GC9	SOFTWARE	GLN A:35 , ASP A:37 , PRO B:117 , GLN B:118	BINDING SITE FOR RESIDUE HOH A 200
064	HC1	SOFTWARE	THR A:67 , ASP A:70 , THR A:96 , HOH A:213	BINDING SITE FOR RESIDUE HOH A 201
065	HC2	SOFTWARE	ASN A:51 , HOH A:167	BINDING SITE FOR RESIDUE HOH A 202
066	HC3	SOFTWARE	ASP A:70 , HOH A:213 , HOH A:223	BINDING SITE FOR RESIDUE HOH A 203
067	HC4	SOFTWARE	PRO A:115 , ASP A:116 , HOH A:207	BINDING SITE FOR RESIDUE HOH A 204
068	HC5	SOFTWARE	ALA A:107	BINDING SITE FOR RESIDUE HOH A 205
069	HC6	SOFTWARE	GLN B:118	BINDING SITE FOR RESIDUE HOH A 206
070	HC7	SOFTWARE	HOH A:152 , HOH A:204 , HOH A:250 , PRO B:117	BINDING SITE FOR RESIDUE HOH A 207
071	HC8	SOFTWARE	GLY A:95 , THR A:96 , HOH A:213	BINDING SITE FOR RESIDUE HOH A 208
072	HC9	SOFTWARE	GLY A:57 , LYS A:59 , THR A:106 , HOH A:173 , HOH A:221 , HOH A:224 , HOH A:227 , HOH A:231	BINDING SITE FOR RESIDUE HOH A 209
073	IC1	SOFTWARE	VAL A:61 , ILE A:78 , HOH A:160 , HOH A:187 , HOH A:190	BINDING SITE FOR RESIDUE HOH A 210
074	IC2	SOFTWARE	GLN A:53	BINDING SITE FOR RESIDUE HOH A 211
075	IC3	SOFTWARE	THR A:16 , GLU A:18 , HOH A:220	BINDING SITE FOR RESIDUE HOH A 212
076	IC4	SOFTWARE	HOH A:201 , HOH A:203 , HOH A:208	BINDING SITE FOR RESIDUE HOH A 213
077	IC5	SOFTWARE	HOH A:190 , HOH A:245	BINDING SITE FOR RESIDUE HOH A 214
078	IC6	SOFTWARE	LEU A:55	BINDING SITE FOR RESIDUE HOH A 215
079	IC7	SOFTWARE	GLU A:18 , HOH A:248	BINDING SITE FOR RESIDUE HOH A 216
080	IC8	SOFTWARE	LEU A:7 , GLN A:42 , ALA A:43 , GLY A:44	BINDING SITE FOR RESIDUE HOH A 217
081	IC9	SOFTWARE	ASN A:19 , HOH A:124	BINDING SITE FOR RESIDUE HOH A 218
082	JC1	SOFTWARE	THR A:67 , THR A:97 , LYS A:98 , HOH A:121 , HOH A:148	BINDING SITE FOR RESIDUE HOH A 219
083	JC2	SOFTWARE	HOH A:163 , HOH A:212	BINDING SITE FOR RESIDUE HOH A 220
084	JC3	SOFTWARE	LYS A:59 , HOH A:140 , HOH A:151 , HOH A:189 , HOH A:209 , HOH A:224	BINDING SITE FOR RESIDUE HOH A 221
085	JC4	SOFTWARE	ALA A:107 , HOH A:138 , HOH A:171	BINDING SITE FOR RESIDUE HOH A 222
086	JC5	SOFTWARE	HOH A:192 , HOH A:203 , HOH A:232	BINDING SITE FOR RESIDUE HOH A 223
087	JC6	SOFTWARE	GLY A:57 , HOH A:177 , HOH A:209 , HOH A:221	BINDING SITE FOR RESIDUE HOH A 224
088	JC7	SOFTWARE	HOH A:155	BINDING SITE FOR RESIDUE HOH A 225
089	JC8	SOFTWARE	HOH A:164 , HOH A:187	BINDING SITE FOR RESIDUE HOH A 226
090	JC9	SOFTWARE	LYS A:59 , THR A:106 , HOH A:178 , HOH A:209 , HOH A:247	BINDING SITE FOR RESIDUE HOH A 227
091	KC1	SOFTWARE	ASN A:108 , HOH A:126 , HOH A:147 , HOH A:196 , HOH A:238	BINDING SITE FOR RESIDUE HOH A 228
092	KC2	SOFTWARE	PHE A:69 , HOH A:172	BINDING SITE FOR RESIDUE HOH A 229
093	KC3	SOFTWARE	LYS A:56 , PHE A:69 , ALA A:107 , HOH A:238	BINDING SITE FOR RESIDUE HOH A 230
094	KC4	SOFTWARE	LYS A:59 , SER A:80 , ASP A:81 , GLY A:82 , HOH A:166 , HOH A:209	BINDING SITE FOR RESIDUE HOH A 231
095	KC5	SOFTWARE	GLU A:21 , HOH A:124 , HOH A:192 , HOH A:223	BINDING SITE FOR RESIDUE HOH A 232
096	KC6	SOFTWARE	LYS A:56	BINDING SITE FOR RESIDUE HOH A 233
097	KC7	SOFTWARE	HOH A:125 , HOH A:133 , HOH A:174	BINDING SITE FOR RESIDUE HOH A 234
098	KC8	SOFTWARE	PHE A:10 , ASP A:28	BINDING SITE FOR RESIDUE HOH A 235
099	KC9	SOFTWARE	VAL A:61 , HOH A:242	BINDING SITE FOR RESIDUE HOH A 236
100	LC1	SOFTWARE	GLY A:95 , ASN B:121	BINDING SITE FOR RESIDUE HOH A 237
101	LC2	SOFTWARE	ASN A:108 , HOH A:228 , HOH A:230	BINDING SITE FOR RESIDUE HOH A 238
102	LC3	SOFTWARE	HOH A:125 , HOH A:159	BINDING SITE FOR RESIDUE HOH A 239
103	LC4	SOFTWARE	CYS A:34 , GLN A:35	BINDING SITE FOR RESIDUE HOH A 240
104	LC5	SOFTWARE	ASP A:37 , THR A:39	BINDING SITE FOR RESIDUE HOH A 241
105	LC6	SOFTWARE	HOH A:236	BINDING SITE FOR RESIDUE HOH A 242
106	LC7	SOFTWARE	ASP A:52 , HOH A:157	BINDING SITE FOR RESIDUE HOH A 243
107	LC8	SOFTWARE	GLY A:71 , ILE A:72 , ASP A:74 , ASP A:89 , ASP A:91 , LYS A:92 , THR A:93 , ZN A:503 , ASN B:121	BINDING SITE FOR RESIDUE HOH A 244
108	LC9	SOFTWARE	SER A:80 , HOH A:214	BINDING SITE FOR RESIDUE HOH A 245
109	MC1	SOFTWARE	HOH A:176	BINDING SITE FOR RESIDUE HOH A 246
110	MC2	SOFTWARE	THR A:106 , HOH A:131 , HOH A:227	BINDING SITE FOR RESIDUE HOH A 247
111	MC3	SOFTWARE	PHE A:24 , HOH A:216	BINDING SITE FOR RESIDUE HOH A 248
112	MC4	SOFTWARE	THR A:106 , HOH A:191	BINDING SITE FOR RESIDUE HOH A 249
113	MC5	SOFTWARE	GLN A:35 , HOH A:207	BINDING SITE FOR RESIDUE HOH A 250
114	MC6	SOFTWARE	GLY A:71 , ASP A:74 , ASP A:91 , THR A:93 , HOH A:126 , ZN A:503	BINDING SITE FOR RESIDUE HOH A 251
115	MC7	SOFTWARE	PRO A:115 , ASP A:116 , ACT A:502	BINDING SITE FOR RESIDUE HOH A 252
116	MC8	SOFTWARE	LYS A:98 , ASP A:116 , HOH A:123 , HOH A:193 , ACT A:502	BINDING SITE FOR RESIDUE HOH A 253
117	MC9	SOFTWARE	GLN A:9 , PHE A:10 , HOH A:185	BINDING SITE FOR RESIDUE HOH A 254
118	NC1	SOFTWARE	LEU A:7 , THR A:41 , GLN A:42	BINDING SITE FOR RESIDUE HOH A 255
119	NC2	SOFTWARE	GLN A:32 , LEU A:50	BINDING SITE FOR RESIDUE HOH A 256
120	NC3	SOFTWARE	GLN A:9 , ILE A:38 , THR A:39	BINDING SITE FOR RESIDUE HOH A 117
121	NC4	SOFTWARE	PHE A:69 , ASP A:70 , GLY A:71	BINDING SITE FOR RESIDUE HOH A 118
122	NC5	SOFTWARE	BME A:501	BINDING SITE FOR RESIDUE HOH A 119
123	NC6	SOFTWARE	LEU A:7 , GLN A:42	BINDING SITE FOR RESIDUE HOH A 120
124	NC7	SOFTWARE	HOH A:133 , HOH A:219	BINDING SITE FOR RESIDUE HOH A 121
125	NC8	SOFTWARE	HOH A:123	BINDING SITE FOR RESIDUE HOH A 122
126	NC9	SOFTWARE	LYS A:98 , HOH A:122 , HOH A:253	BINDING SITE FOR RESIDUE HOH A 123
127	OC1	SOFTWARE	GLU A:21 , HOH A:218 , HOH A:232	BINDING SITE FOR RESIDUE HOH A 124
128	OC2	SOFTWARE	HOH A:234 , HOH A:239	BINDING SITE FOR RESIDUE HOH A 125
129	OC3	SOFTWARE	ASP A:74 , HOH A:196 , HOH A:228 , HOH A:251	BINDING SITE FOR RESIDUE HOH A 126
130	OC4	SOFTWARE	LEU A:49 , MSE A:83	BINDING SITE FOR RESIDUE HOH A 127
131	OC5	SOFTWARE	ASN A:30	BINDING SITE FOR RESIDUE HOH A 128
132	OC6	SOFTWARE	ILE A:11 , ILE A:38 , BME A:501	BINDING SITE FOR RESIDUE HOH A 129
133	OC7	SOFTWARE	GLN A:32 , VAL A:33 , ASN A:51 , ASP A:52 , GLN A:53	BINDING SITE FOR RESIDUE HOH A 130
134	OC8	SOFTWARE	HOH A:247	BINDING SITE FOR RESIDUE HOH A 131
135	OC9	SOFTWARE	THR A:106 , HOH A:178 , HOH A:191	BINDING SITE FOR RESIDUE HOH A 132
136	PC1	SOFTWARE	HOH A:121 , HOH A:234	BINDING SITE FOR RESIDUE HOH A 133
137	PC2	SOFTWARE	GLY A:95 , THR A:96	BINDING SITE FOR RESIDUE HOH A 134
138	PC3	SOFTWARE	HOH A:165	BINDING SITE FOR RESIDUE HOH A 135
139	PC4	SOFTWARE	TYR A:26 , HOH A:163	BINDING SITE FOR RESIDUE HOH A 136
140	PC5	SOFTWARE	MSE A:83	BINDING SITE FOR RESIDUE HOH A 137
141	PC6	SOFTWARE	ALA A:107 , HOH A:196 , HOH A:222	BINDING SITE FOR RESIDUE HOH A 138
142	PC7	SOFTWARE	HOH A:172	BINDING SITE FOR RESIDUE HOH A 139
143	PC8	SOFTWARE	HOH A:162 , HOH A:221	BINDING SITE FOR RESIDUE HOH A 140

(no "SS Bond" information available for 3N55)

(no "Cis Peptide Bond" information available for 3N55)

(no "SAP(SNP)/Variant" information available for 3N55)

(no "PROSITE Motif" information available for 3N55)

(no "Exon" information available for 3N55)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:111
 aligned with Q8EGA7_SHEON | Q8EGA7 from UniProtKB/TrEMBL  Length:125

    Alignment length:111
                                    15        25        35        45        55        65        75        85        95       105       115 
         Q8EGA7_SHEON     6 GLAQFIKVNVTLENGEPVFIYTDANGQVCQGDITVTQAGTITYLLNDQTLKGLKFVGVGFVTPFDGIIDAVTISSDGMLVQLVDLDKTPGTTKFQFVLSNTANTLLVLSPD 116
               SCOP domains d3n55.1 A:,B: Hypothetical protein SO1698                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..eeeeeee.....ee...eee...eeeeeeeee......eeeeeee.........eeee.....eeeeee.....eeeeeeeeee.......ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3n55 A   6 GLAQFIKVNVTLENGEPVFIYTDANGQVCQGDITVTQAGTITYLLNDQTLKGLKFVGVGFVTPFDGIIDAVTISSDGmLVQLVDLDKTPGTTKFQFVLSNTANTLLVLSPD 116
                                    15        25        35        45        55        65        75       |85        95       105       115 
                                                                                                        83-MSE

Chain B from PDB  Type:PROTEIN  Length:7
 aligned with Q8EGA7_SHEON | Q8EGA7 from UniProtKB/TrEMBL  Length:125

    Alignment length:7
         Q8EGA7_SHEON   117 PQIINRP 123
               SCOP domains d3n55.1 SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author .eeee.. Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3n55 B 117 PQIINRP 123

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Cupredoxin-like (545)

Superfamily: Cupredoxins (543)

Family: SO1698-like (1)

Protein domain: Hypothetical protein SO1698 (1)

Shewanella oneidensis [TaxId: 70863] (1)

d3n55.1

A:,B:

(no "CATH Domain" information available for 3N55, only for superseded entry 2AI4 replaced by 3N55)

(no "Pfam Domain" information available for 3N55)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q8EGA7_SHEON | Q8EGA7)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3n55)

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	3n55
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(no "Related Entries Specified in the PDB File" available for 3N55)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 4)

Sites (143, 143)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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SCOP Domains (1, 1)

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