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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A CLATHRIN HEAVY CHAIN AND CLATHRIN LIGHT CHAIN COMPLEX
 
Authors :  J. D. Wilbur, P. K. Hwang, J. A. Ybe, M. Lane, B. D. Sellers, M. P. Jacobson R. J. Fletterick, F. M. Brodsky
Date :  20 Feb 10  (Deposition) - 09 Jun 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  9.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Self Assembly, Coated Pit, Cytoplasmic Vesicle, Membrane, Calcium, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Wilbur, P. K. Hwang, J. A. Ybe, M. Lane, B. D. Sellers, M. P. Jacobson, R. J. Fletterick, F. M. Brodsky
Conformation Switching Of Clathrin Light Chain Regulates Clathrin Lattice Assembly.
Dev. Cell V. 18 841 2010
PubMed-ID: 20493816  |  Reference-DOI: 10.1016/J.DEVCEL.2010.04.007

(-) Compounds

Molecule 1 - CLATHRIN HEAVY CHAIN 1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: HUB
    Gene: CLTC
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
 
Molecule 2 - CLATHRIN LIGHT CHAIN B
    Chains: D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CLTB, CLTLB
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: LCB

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 102)

Asymmetric/Biological Unit (1, 102)
No.NameCountTypeFull Name
1UNK102Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 3LVH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LVH)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ser A:1136 -Tyr A:1137
2Ser B:1136 -Tyr B:1137
3Ser C:1136 -Tyr C:1137
4Unk D:174 -Unk D:175
5Ile E:89 -Ala E:90
6Ala E:90 -Gln E:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LVH)

(-) PROSITE Motifs  (1, 9)

Asymmetric/Biological Unit (1, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHCRPS50236 Clathrin heavy-chain (CHCR) repeat profile.CLH1_BOVIN537-683
686-828
833-972
979-1124
1128-1269
 
 
1274-1420
 
 
1423-1566
 
 		  9-
-
-
-
A:1128-1269
B:1128-1269
C:1128-1269
A:1274-1420
B:1274-1420
C:1274-1420
A:1423-1566
B:1423-1566
C:1423-1566

(-) Exons   (0, 0)

(no "Exon" information available for 3LVH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:554
 aligned with CLH1_BOVIN | P49951 from UniProtKB/Swiss-Prot  Length:1675

    Alignment length:554
                                  1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456      1466      1476      1486      1496      1506      1516      1526      1536      1546      1556      1566      1576      1586      1596      1606      1616      1626    
          CLH1_BOVIN   1077 VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................hhhhhh.....................hhhhhhhh.......hhhhhhhhhhhhhh....hhhhhhhhhh.................hhhhhhhhhhhh........hhhhh.............hhhhh...hhhhh....hhhhhhhhhhhh......hhhhhhhhh.....hhhhh......hhhhh..hhhhhh.....hhhhhhhhhhhhhh...hhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhh......hhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhh..hhhhhh.........hhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CHCR  PDB: - UniProt: 979-1124                  ---CHCR  PDB: A:1128-1269 UniProt: 1128-1269                                                                                                     ----CHCR  PDB: A:1274-1420 UniProt: 1274-1420                                                                                                          --CHCR  PDB: A:1423-1566 UniProt: 1423-1566                                                                                                       ---------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3lvh A 1077 VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
                                  1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456      1466      1476      1486      1496      1506      1516      1526      1536      1546      1556      1566      1576      1586      1596      1606      1616      1626    


Chain B from PDB  Type:PROTEIN  Length:554
 aligned with CLH1_BOVIN | P49951 from UniProtKB/Swiss-Prot  Length:1675

    Alignment length:554
                                  1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456      1466      1476      1486      1496      1506      1516      1526      1536      1546      1556      1566      1576      1586      1596      1606      1616      1626    
          CLH1_BOVIN   1077 VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................hhhhhh.....................hhhhhhhh.......hhhhhhhhhhhhhh....hhhhhhhhhh.................hhhhhhhhhhhh........hhhhh.............hhhhh...hhhhh....hhhhhhhhhhhh......hhhhhhhhh.....hhhhh......hhhhh..hhhhhh.....hhhhhhhhhhhhhh...hhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhh......hhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhh..hhhhhh.........hhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CHCR  PDB: - UniProt: 979-1124                  ---CHCR  PDB: B:1128-1269 UniProt: 1128-1269                                                                                                     ----CHCR  PDB: B:1274-1420 UniProt: 1274-1420                                                                                                          --CHCR  PDB: B:1423-1566 UniProt: 1423-1566                                                                                                       ---------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3lvh B 1077 VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
                                  1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456      1466      1476      1486      1496      1506      1516      1526      1536      1546      1556      1566      1576      1586      1596      1606      1616      1626    


Chain C from PDB  Type:PROTEIN  Length:554
 aligned with CLH1_BOVIN | P49951 from UniProtKB/Swiss-Prot  Length:1675

    Alignment length:554
                                  1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456      1466      1476      1486      1496      1506      1516      1526      1536      1546      1556      1566      1576      1586      1596      1606      1616      1626    
          CLH1_BOVIN   1077 VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC01 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC02 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC03 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC04 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC05 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC06 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC07 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC08 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (8)
           Pfam domains (9) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC09 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (9)
          Pfam domains (10) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC10 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (10)
          Pfam domains (11) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC11 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (11)
          Pfam domains (12) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvhC12 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (12)
         Sec.struct. author .................................hhhhhh.....................hhhhhhhh.......hhhhhhhhhhhhhh....hhhhhhhhhh.................hhhhhhhhhhhh........hhhhh.............hhhhh...hhhhh....hhhhhhhhhhhh......hhhhhhhhh.....hhhhh......hhhhh..hhhhhh.....hhhhhhhhhhhhhh...hhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhh......hhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhh..hhhhhh.........hhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CHCR  PDB: - UniProt: 979-1124                  ---CHCR  PDB: C:1128-1269 UniProt: 1128-1269                                                                                                     ----CHCR  PDB: C:1274-1420 UniProt: 1274-1420                                                                                                          --CHCR  PDB: C:1423-1566 UniProt: 1423-1566                                                                                                       ---------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3lvh C 1077 VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
                                  1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456      1466      1476      1486      1496      1506      1516      1526      1536      1546      1556      1566      1576      1586      1596      1606      1616      1626    


Chain D from PDB  Type:PROTEIN  Length:113
 aligned with CLCB_BOVIN | P04975 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:115
                                   100       110       120       130       140       150       160       170       180       190       200     
          CLCB_BOVIN     91 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSS  205
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhh--...hhhhhhhhh..........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                3lvh D   91 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII--xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  205
                                   100       110       120       130       140       150       160        |- ||||||180|||||||190|||||||200|||||
                                                                                                        169  ||||||180-UNK||189-UNK||198-UNK|||
                                                                                                           172-UNK||181-UNK||190-UNK||199-UNK||
                                                                                                            173-UNK||182-UNK||191-UNK||200-UNK|
                                                                                                             174-UNK| 183-UNK| 192-UNK| 201-UNK
                                                                                                              175-UNK  184-UNK  193-UNK  202-UNK
                                                                                                               176-UNK  185-UNK  194-UNK  203-UNK
                                                                                                                177-UNK  186-UNK  195-UNK  204-UNK
                                                                                                                 178-UNK  187-UNK  196-UNK  205-UNK
                                                                                                                  179-UNK  188-UNK  197-UNK    


Chain E from PDB  Type:PROTEIN  Length:102
 aligned with CLCB_BOVIN | P04975 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:115
                                    98       108       118       128       138       148       158       168       178       188       198     
          CLCB_BOVIN     89 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPK  203
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....-------------hhhhhhhhhh.......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                3lvh E   89 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA-------------xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  203
                                    98       108       118       128       138       148       | -         - ||||||178|||||||188|||||||198|||||
                                                                                             156           170-UNK||179-UNK||188-UNK||197-UNK||
                                                                                                            171-UNK||180-UNK||189-UNK||198-UNK|
                                                                                                             172-UNK||181-UNK||190-UNK||199-UNK
                                                                                                              173-UNK| 182-UNK| 191-UNK| 200-UNK
                                                                                                               174-UNK  183-UNK  192-UNK  201-UNK
                                                                                                                175-UNK  184-UNK  193-UNK  202-UNK
                                                                                                                 176-UNK  185-UNK  194-UNK  203-UNK
                                                                                                                  177-UNK  186-UNK  195-UNK    
                                                                                                                   178-UNK  187-UNK  196-UNK   


Chain F from PDB  Type:PROTEIN  Length:112
 aligned with CLCB_BOVIN | P04975 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:113
                                   100       110       120       130       140       150       160       170       180       190       200   
          CLCB_BOVIN     91 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPK  203
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Clathrin_lg_ch-3lvhF01 F:91-168                                               ----------------------------------- Pfam domains (1)
           Pfam domains (2) Clathrin_lg_ch-3lvhF02 F:91-168                                               ----------------------------------- Pfam domains (2)
           Pfam domains (3) Clathrin_lg_ch-3lvhF03 F:91-168                                               ----------------------------------- Pfam domains (3)
         Sec.struct. author ...........hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                3lvh F   91 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI-xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  203
                                   100       110       120       130       140       150       160       170|||||||180|||||||190|||||||200|||
                                                                                                       168 ||||||178-UNK||187-UNK||196-UNK|||
                                                                                                         170-UNK||179-UNK||188-UNK||197-UNK||
                                                                                                          171-UNK||180-UNK||189-UNK||198-UNK|
                                                                                                           172-UNK| 181-UNK| 190-UNK| 199-UNK
                                                                                                            173-UNK  182-UNK  191-UNK  200-UNK
                                                                                                             174-UNK  183-UNK  192-UNK  201-UNK
                                                                                                              175-UNK  184-UNK  193-UNK  202-UNK
                                                                                                               176-UNK  185-UNK  194-UNK  203-UNK
                                                                                                                177-UNK  186-UNK  195-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LVH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LVH)

(-) Pfam Domains  (2, 15)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)
(-)
Family: Clathrin (2)
(-)
Bos taurus (Bovine) (2)
1aClathrin-3lvhC01C:1423-1565
1bClathrin-3lvhC02C:1423-1565
1cClathrin-3lvhC03C:1423-1565
1dClathrin-3lvhC04C:1423-1565
1eClathrin-3lvhC05C:1423-1565
1fClathrin-3lvhC06C:1423-1565
1gClathrin-3lvhC07C:1423-1565
1hClathrin-3lvhC08C:1423-1565
1iClathrin-3lvhC09C:1423-1565
1jClathrin-3lvhC10C:1423-1565
1kClathrin-3lvhC11C:1423-1565
1lClathrin-3lvhC12C:1423-1565
(-)
Clan: no clan defined [family: Clathrin_lg_ch] (2)

(-) Gene Ontology  (18, 27)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (CLH1_BOVIN | P49951)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:1900126    negative regulation of hyaluronan biosynthetic process    Any process that stops, prevents or reduces the frequency, rate or extent of hyaluronan biosynthetic process.
    GO:0016192    vesicle-mediated transport    A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
    GO:0030132    clathrin coat of coated pit    The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex.
    GO:0030130    clathrin coat of trans-Golgi network vesicle    A clathrin coat found on a vesicle of the trans-Golgi network.
    GO:0005905    clathrin-coated pit    A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0030659    cytoplasmic vesicle membrane    The lipid bilayer surrounding a cytoplasmic vesicle.
    GO:0042470    melanosome    A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030117    membrane coat    Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Chain D,E,F   (CLCB_BOVIN | P04975)
molecular function
    GO:0032050    clathrin heavy chain binding    Interacting selectively and non-covalently with a clathrin heavy chain.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0072583    clathrin-dependent endocytosis    An endocytosis process that begins when material is taken up into clathrin-coated pits, which then pinch off to form clathrin-coated endocytic vesicles.
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:0016192    vesicle-mediated transport    A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
    GO:0030118    clathrin coat    A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes.
    GO:0030132    clathrin coat of coated pit    The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex.
    GO:0030130    clathrin coat of trans-Golgi network vesicle    A clathrin coat found on a vesicle of the trans-Golgi network.
    GO:0030125    clathrin vesicle coat    A clathrin coat found on a vesicle.
    GO:0005905    clathrin-coated pit    A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0030659    cytoplasmic vesicle membrane    The lipid bilayer surrounding a cytoplasmic vesicle.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  3lvh
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  CLCB_BOVIN | P04975
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  CLH1_BOVIN | P49951
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLCB_BOVIN | P04975: 3lvg
        CLH1_BOVIN | P49951: 1b89 1utc 1xi4 1xi5 3gc3 3gd1 3iyv 3lvg 3qil 5m5r 5m5s 5m5t 5m5u 5m5v 5m61

(-) Related Entries Specified in the PDB File

3lvg