3LJT - JenaLib

Title :   CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF ADAMTS-5 IN COMPLEX WITH AN AMINO-2-INDANOL COMPOUND

Authors :   H. -S. Shieh, J. M. Williams, N. Caspers

Date :   26 Jan 10 (Deposition) - 31 Mar 10 (Release) - 06 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A

Keywords :   Alpha/Beta Structure, Central Five Stranded Beta-Sheet, Cleavage On Pair Of Basic Residues, Disulfide Bond, Extracellular Matrix, Glycoprotein, Metal-Binding, Metalloprotease, Protease, Secreted, Zymogen, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. S. Shieh, A. G. Tomasselli, K. J. Mathis, M. E. Schnute, S. S. Woodard N. Caspers, J. M. Williams, J. R. Kiefer, G. Munie, A. Wittwer, A. M. Malfait, M. D. Tortorella
Structure Analysis Reveals The Flexibility Of The Adamts-5 Active Site.
Protein Sci. V. 20 735 2011
PubMed-ID: 21370305 | Reference-DOI: 10.1002/PRO.606

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:377 , THR A:378 , LEU A:379 , GLY A:380 , PHE A:406 , THR A:407 , HIS A:410 , GLU A:411 , HIS A:414 , HIS A:420 , LEU A:438 , SER A:440 , SER A:441 , LEU A:443 , ILE A:446 , ZN A:901 , HOH A:5040 , HOH A:5296	BINDING SITE FOR RESIDUE LA3 A 801
2	AC2	SOFTWARE	GLY A:372 , GLY A:385 , THR A:386 , SER A:389 , HIS A:468 , HOH A:5006 , HOH A:5217	BINDING SITE FOR RESIDUE EDO A 802
3	AC3	SOFTWARE	HIS A:410 , HIS A:414 , HIS A:420 , LA3 A:801	BINDING SITE FOR RESIDUE ZN A 901
4	AC4	SOFTWARE	GLU A:270 , ASP A:360 , CYS A:471 , ASP A:474 , HOH A:5009 , HOH A:5031	BINDING SITE FOR RESIDUE CA A 902
5	AC5	SOFTWARE	GLU A:270 , ASP A:474 , LEU A:475 , HOH A:5068 , HOH A:5103 , HOH A:5157	BINDING SITE FOR RESIDUE CA A 903
6	AC6	SOFTWARE	ASP A:369 , LEU A:370 , CYS A:376 , THR A:378 , GLU A:398 , HOH A:5014	BINDING SITE FOR RESIDUE CA A 904

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (4, 4)

Asymmetric/Biological Unit (4, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000284987	1	ENSE00001017391	chr21:28338832-28337607	1226	ATS5_HUMAN	1-368	368	1	A:263-368	106
1.2	ENST00000284987	2	ENSE00001017390	chr21:28327190-28327058	133	ATS5_HUMAN	369-413	45	1	A:369-413	45
1.3	ENST00000284987	3	ENSE00001017386	chr21:28315866-28315699	168	ATS5_HUMAN	413-469	57	1	A:413-469	57
1.4	ENST00000284987	4	ENSE00001017392	chr21:28307068-28306785	284	ATS5_HUMAN	469-563	95	1	A:469-480	12
1.5	ENST00000284987	5	ENSE00001017389	chr21:28305363-28305180	184	ATS5_HUMAN	564-625	62	0	-	-
1.6	ENST00000284987	6	ENSE00001017388	chr21:28304498-28304323	176	ATS5_HUMAN	625-683	59	0	-	-
1.7	ENST00000284987	7	ENSE00001017393	chr21:28302380-28302205	176	ATS5_HUMAN	684-742	59	0	-	-
1.8	ENST00000284987	8	ENSE00001017387	chr21:28296939-28290231	6709	ATS5_HUMAN	742-930	189	0	-	-

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:218
 aligned with ATS5_HUMAN | Q9UNA0 from UniProtKB/Swiss-Prot  Length:930

    Alignment length:218
                                   272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472        
           ATS5_HUMAN   263 ISRARQVELLLVADASMARLYGRGLQHYLLTLASIANRLYSHASIENHIRLAVVKVVVLGDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGMADVGTICSPERSCAVIEDDGLHAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQI 480
               SCOP domains d3ljta_ A: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----Reprolysin-3ljtA01 A:267-476                                                                                                                                                                                      ---- Pfam domains
         Sec.struct. author ....eeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee............hhhhhhhhhhhhhhhhhhh.........eeeeee.............eee......hhhh.eeeee....hhhhhhhhhhhhhh......hhhhhhhhh..........hhhhh......hhhhhhhhhhhhhh..hhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ADAM_MEPRO  PDB: A:267-476 UniProt: 267-476                                                                                                                                                                       ---- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE---------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:263-368 UniProt: 1-368 [INCOMPLETE]                                                      Exon 1.2  PDB: A:369-413 UniProt: 369-413    -------------------------------------------------------Exon 1.4     Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.3  PDB: A:413-469 UniProt: 413-469                ----------- Transcript 1 (2)
                 3ljt A 263 ASRARQVELLLVADASMARKYGRGLQHYLLTLASIANRLYSHASIENHIRLAVVKVVVLGDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGMADVGTICSPERSCAVIEDDGLHAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQI 480
                                   272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ATS5_HUMAN | Q9UNA0)

molecular function
	GO:0050840	extracellular matrix binding	Interacting selectively and non-covalently with a component of the extracellular matrix.
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0005178	integrin binding	Interacting selectively and non-covalently with an integrin.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0036066	protein O-linked fucosylation	The process of transferring a fucosyl group to a serine or threonine residues in a protein acceptor molecule, to form an O-linked protein-sugar linkage.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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