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3LJT
Asym. Unit
Info
Asym.Unit (48 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF ADAMTS-5 IN COMPLEX WITH AN AMINO-2-INDANOL COMPOUND
Authors
:
H. -S. Shieh, J. M. Williams, N. Caspers
Date
:
26 Jan 10 (Deposition) - 31 Mar 10 (Release) - 06 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha/Beta Structure, Central Five Stranded Beta-Sheet, Cleavage On Pair Of Basic Residues, Disulfide Bond, Extracellular Matrix, Glycoprotein, Metal-Binding, Metalloprotease, Protease, Secreted, Zymogen, Hydrolase
(Keyword Search:
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Reference
:
H. S. Shieh, A. G. Tomasselli, K. J. Mathis, M. E. Schnute, S. S. Woodard N. Caspers, J. M. Williams, J. R. Kiefer, G. Munie, A. Wittwer, A. M. Malfait, M. D. Tortorella
Structure Analysis Reveals The Flexibility Of The Adamts-5 Active Site.
Protein Sci. V. 20 735 2011
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: 1,2-ETHANEDIOL (EDOa)
3a: (2R)-2-[4-(1,3-BENZODIOXOL-5-YL)BE... (LA3a)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
LA3
1
Ligand/Ion
(2R)-2-[4-(1,3-BENZODIOXOL-5-YL)BENZYL]-N~4~-HYDROXY-N~1~-[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]BUTANEDIAMIDE
4
ZN
1
Ligand/Ion
ZINC ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:377 , THR A:378 , LEU A:379 , GLY A:380 , PHE A:406 , THR A:407 , HIS A:410 , GLU A:411 , HIS A:414 , HIS A:420 , LEU A:438 , SER A:440 , SER A:441 , LEU A:443 , ILE A:446 , ZN A:901 , HOH A:5040 , HOH A:5296
BINDING SITE FOR RESIDUE LA3 A 801
2
AC2
SOFTWARE
GLY A:372 , GLY A:385 , THR A:386 , SER A:389 , HIS A:468 , HOH A:5006 , HOH A:5217
BINDING SITE FOR RESIDUE EDO A 802
3
AC3
SOFTWARE
HIS A:410 , HIS A:414 , HIS A:420 , LA3 A:801
BINDING SITE FOR RESIDUE ZN A 901
4
AC4
SOFTWARE
GLU A:270 , ASP A:360 , CYS A:471 , ASP A:474 , HOH A:5009 , HOH A:5031
BINDING SITE FOR RESIDUE CA A 902
5
AC5
SOFTWARE
GLU A:270 , ASP A:474 , LEU A:475 , HOH A:5068 , HOH A:5103 , HOH A:5157
BINDING SITE FOR RESIDUE CA A 903
6
AC6
SOFTWARE
ASP A:369 , LEU A:370 , CYS A:376 , THR A:378 , GLU A:398 , HOH A:5014
BINDING SITE FOR RESIDUE CA A 904
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:267-476)
2: ZINC_PROTEASE (A:407-416)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS5_HUMAN
267-476
1
A:267-476
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS5_HUMAN
407-416
1
A:407-416
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:263-368)
Exon 1.2 (A:369-413)
Exon 1.3 (A:413-469)
Exon 1.4 (A:469-480)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000284987
1
ENSE00001017391
chr21:
28338832-28337607
1226
ATS5_HUMAN
1-368
368
1
A:263-368
106
1.2
ENST00000284987
2
ENSE00001017390
chr21:
28327190-28327058
133
ATS5_HUMAN
369-413
45
1
A:369-413
45
1.3
ENST00000284987
3
ENSE00001017386
chr21:
28315866-28315699
168
ATS5_HUMAN
413-469
57
1
A:413-469
57
1.4
ENST00000284987
4
ENSE00001017392
chr21:
28307068-28306785
284
ATS5_HUMAN
469-563
95
1
A:469-480
12
1.5
ENST00000284987
5
ENSE00001017389
chr21:
28305363-28305180
184
ATS5_HUMAN
564-625
62
0
-
-
1.6
ENST00000284987
6
ENSE00001017388
chr21:
28304498-28304323
176
ATS5_HUMAN
625-683
59
0
-
-
1.7
ENST00000284987
7
ENSE00001017393
chr21:
28302380-28302205
176
ATS5_HUMAN
684-742
59
0
-
-
1.8
ENST00000284987
8
ENSE00001017387
chr21:
28296939-28290231
6709
ATS5_HUMAN
742-930
189
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3ljta_ (A:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d3ljta_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Reprolysin_3ljtA01 (A:267-476)
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Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin
(9)
Homo sapiens (Human)
(9)
1a
Reprolysin-3ljtA01
A:267-476
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Chain A
Asymmetric Unit 1
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