2RJQ - JenaLib

Title :   CRYSTAL STRUCTURE OF ADAMTS5 WITH INHIBITOR BOUND

Authors :   L. Mosyak, M. Stahl, W. Somers

Date :   15 Oct 07 (Deposition) - 11 Dec 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A

Keywords :   Metalloprotease Domain, Aggrecanase, Cleavage On Pair Of Basic Residues, Extracellular Matrix, Glycoprotein, Hydrolase, Metal- Binding, Secreted, Zymogen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Mosyak, K. Georgiadis, T. Shane, K. Svenson, T. Hebert, T. Mcdonagh S. Mackie, S. Olland, L. Lin, X. Zhong, R. Kriz, E. L. Reifenberg, L. A. Collins-Racie, C. Corcoran, B. Freeman, R. Zollner, T. Marvell, M. Vera, P. E. Sum, E. R. Lavallie, M. Stahl, W. Somers
Crystal Structures Of The Two Major Aggrecan Degrading Enzymes, Adamts4 And Adamts5.
Protein Sci. V. 17 16 2008
PubMed-ID: 18042673 | Reference-DOI: 10.1110/PS.073287008

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 9)

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:282 , GLN A:495 , ASN A:498 , LEU A:499 , NAG A:558 , HOH A:612	BINDING SITE FOR RESIDUE NAG A 557
2	AC2	SOFTWARE	ARG A:281 , LEU A:282 , GLY A:284 , NAG A:557	BINDING SITE FOR RESIDUE NAG A 558
3	AC3	SOFTWARE	HIS A:410 , HIS A:414 , HIS A:420 , BAT A:559	BINDING SITE FOR RESIDUE ZN A 1
4	AC4	SOFTWARE	CL A:3 , CL A:4 , HIS A:348 , HIS A:374	BINDING SITE FOR RESIDUE ZN A 2
5	AC5	SOFTWARE	ZN A:2 , HIS A:348 , HIS A:374 , BAT A:559	BINDING SITE FOR RESIDUE CL A 3
6	AC6	SOFTWARE	ZN A:2 , HIS A:348 , GLY A:372 , HIS A:374 , SER A:375	BINDING SITE FOR RESIDUE CL A 4
7	AC7	SOFTWARE	GLU A:270 , ASP A:360 , CYS A:471 , ASP A:474 , HOH A:578	BINDING SITE FOR RESIDUE CA A 5
8	AC8	SOFTWARE	ASP A:369 , LEU A:370 , CYS A:376 , THR A:378 , GLU A:398	BINDING SITE FOR RESIDUE CA A 6
9	AC9	SOFTWARE	ZN A:1 , CL A:3 , GLN A:347 , HIS A:348 , ASP A:377 , THR A:378 , LEU A:379 , GLY A:380 , HIS A:410 , GLU A:411 , HIS A:414 , HIS A:420 , SER A:440 , SER A:441 , ILE A:442 , LEU A:443 , HOH A:634	BINDING SITE FOR RESIDUE BAT A 559

SS Bonds (8, 8)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (4, 4)

Asymmetric/Biological Unit (4, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000284987	1	ENSE00001017391	chr21:28338832-28337607	1226	ATS5_HUMAN	1-368	368	1	A:264-368	105
1.2	ENST00000284987	2	ENSE00001017390	chr21:28327190-28327058	133	ATS5_HUMAN	369-413	45	1	A:369-413	45
1.3	ENST00000284987	3	ENSE00001017386	chr21:28315866-28315699	168	ATS5_HUMAN	413-469	57	1	A:413-469	57
1.4	ENST00000284987	4	ENSE00001017392	chr21:28307068-28306785	284	ATS5_HUMAN	469-563	95	1	A:469-555	87
1.5	ENST00000284987	5	ENSE00001017389	chr21:28305363-28305180	184	ATS5_HUMAN	564-625	62	0	-	-
1.6	ENST00000284987	6	ENSE00001017388	chr21:28304498-28304323	176	ATS5_HUMAN	625-683	59	0	-	-
1.7	ENST00000284987	7	ENSE00001017393	chr21:28302380-28302205	176	ATS5_HUMAN	684-742	59	0	-	-
1.8	ENST00000284987	8	ENSE00001017387	chr21:28296939-28290231	6709	ATS5_HUMAN	742-930	189	0	-	-

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:292
 aligned with ATS5_HUMAN | Q9UNA0 from UniProtKB/Swiss-Prot  Length:930

    Alignment length:292
                                   273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553  
           ATS5_HUMAN   264 SRARQVELLLVADASMARLYGRGLQHYLLTLASIANRLYSHASIENHIRLAVVKVVVLGDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGMADVGTICSPERSCAVIEDDGLHAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQILGPEELPGQTYDATQQCNLTFGPEYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVD 555
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---Reprolysin-2rjqA01 A:267-476                                                                                                                                                                                      ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee............hhhhhhhhhhhhhhhh............eeeeee.............eee......hhhh.eeeee....hhhhhhhhhhhhhh......hhhhhhhh......................hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhh...ee...........eeeee..eeeee................eee..eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---ADAM_MEPRO  PDB: A:267-476 UniProt: 267-476                                                                                                                                                                       ------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:264-368 UniProt: 1-368 [INCOMPLETE]                                                     Exon 1.2  PDB: A:369-413 UniProt: 369-413    -------------------------------------------------------Exon 1.4  PDB: A:469-555 UniProt: 469-563 [INCOMPLETE]                                  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.3  PDB: A:413-469 UniProt: 413-469                -------------------------------------------------------------------------------------- Transcript 1 (2)
                 2rjq A 264 SRARQVELLLVADASMARLYGRGLQHYLLTLASIANRLYSHASIENHIRLAVVKVVVLGDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGMADVGTICSPERSCAVIEDDGLHAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQILGPEELPGQTYDATQQCNLTFGPEYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVD 555
                                   273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ATS5_HUMAN | Q9UNA0)

molecular function
	GO:0050840	extracellular matrix binding	Interacting selectively and non-covalently with a component of the extracellular matrix.
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0005178	integrin binding	Interacting selectively and non-covalently with an integrin.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0036066	protein O-linked fucosylation	The process of transferring a fucosyl group to a serine or threonine residues in a protein acceptor molecule, to form an O-linked protein-sugar linkage.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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		Arg A:285 - Gly A:286	[ RasMol ]

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	2rjq
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