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(-) Description

Title :  CRYSTAL STRUCTURE OF E. COLI W35F BFR MUTANT
 
Authors :  A. Crow, T. L. Lawson, A. Lewin, G. R. Moore, N. E. Le Brun
Date :  04 Mar 09  (Deposition) - 06 Oct 09  (Release) - 06 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L  (2x)
Keywords :  Bfr, W35F, Heme, Iron, Iron Storage, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. L. Lawson, A. Crow, A. Lewin, S. Yasmin, G. R. Moore, N. E. Le Brun
Monitoring The Iron Status Of The Ferroxidase Center Of Escherichia Coli Bacterioferritin Using Fluorescence Spectroscopy.
Biochemistry V. 48 9031 2009
PubMed-ID: 19705876  |  Reference-DOI: 10.1021/BI900869X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BACTERIOFERRITIN
    ChainsA, B, C, D, E, F, G, H, I, J, K, L
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneB3336, BFR, JW3298
    MutationYES
    Organism ScientificESCHERICHIA COLI K-12
    Organism Taxid83333
    SynonymBFR, CYTOCHROME B-1, CYTOCHROME B-557

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (2x)ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 39)

Asymmetric Unit (3, 39)
No.NameCountTypeFull Name
1FE12Ligand/IonFE (III) ION
2HEM6Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3SO421Ligand/IonSULFATE ION
Biological Unit 1 (2, 54)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2HEM12Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3SO442Ligand/IonSULFATE ION

(-) Sites  (39, 39)

Asymmetric Unit (39, 39)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:145 , LEU A:146 , GLN A:147 , HOH A:325BINDING SITE FOR RESIDUE SO4 A 250
02AC2SOFTWAREGLU A:18 , GLU A:51 , HIS A:54 , GLU A:127BINDING SITE FOR RESIDUE FE A 300
03AC3SOFTWAREILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , MET A:52 , ALA A:55 , ASP A:56 , HOH A:317 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , MET B:52 , HOH B:316BINDING SITE FOR RESIDUE HEM A 200
04AC4SOFTWAREARG A:117 , ARG D:117 , ARG J:117BINDING SITE FOR RESIDUE SO4 A 159
05AC5SOFTWAREARG A:57 , MET A:119 , HOH A:168 , ARG J:125BINDING SITE FOR RESIDUE SO4 A 160
06AC6SOFTWAREGLY B:145 , LEU B:146 , GLN B:147 , HOH B:173BINDING SITE FOR RESIDUE SO4 B 250
07AC7SOFTWAREGLU B:18 , GLU B:51 , HIS B:54 , GLU B:127BINDING SITE FOR RESIDUE FE B 300
08AC8SOFTWAREARG B:117 , ARG C:117 , ARG H:117 , HOH H:265BINDING SITE FOR RESIDUE SO4 B 159
09AC9SOFTWAREGLY C:145 , LEU C:146 , GLN C:147 , HOH C:164 , HOH C:167 , HOH C:272BINDING SITE FOR RESIDUE SO4 C 250
10BC1SOFTWAREGLU C:18 , GLU C:51 , HIS C:54 , GLU C:127BINDING SITE FOR RESIDUE FE C 300
11BC2SOFTWAREARG C:57 , MET C:119 , ARG H:125BINDING SITE FOR RESIDUE SO4 C 159
12BC3SOFTWAREILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , MET C:52 , ALA C:55 , HOH C:160 , LEU D:19 , ILE D:22 , ASN D:23 , PHE D:26 , TYR D:45 , MET D:52 , HOH D:176 , HOH D:313BINDING SITE FOR RESIDUE HEM D 200
13BC4SOFTWAREGLY D:145 , LEU D:146 , GLN D:147 , HOH D:162BINDING SITE FOR RESIDUE SO4 D 250
14BC5SOFTWAREGLU D:18 , GLU D:51 , HIS D:54 , GLU D:127BINDING SITE FOR RESIDUE FE D 300
15BC6SOFTWAREGLY E:145 , LEU E:146 , GLN E:147BINDING SITE FOR RESIDUE SO4 E 250
16BC7SOFTWAREGLU E:18 , GLU E:51 , HIS E:54 , GLU E:127BINDING SITE FOR RESIDUE FE E 300
17BC8SOFTWAREILE E:22 , ASN E:23 , PHE E:26 , TYR E:45 , MET E:52 , ASP E:56 , HOH E:171 , ILE F:22 , ASN F:23 , PHE F:26 , TYR F:45 , MET F:52 , HOH F:161 , HOH F:194 , HOH F:327BINDING SITE FOR RESIDUE HEM F 200
18BC9SOFTWAREGLY F:145 , LEU F:146 , GLN F:147BINDING SITE FOR RESIDUE SO4 F 250
19CC1SOFTWAREGLU F:18 , GLU F:51 , HIS F:54 , GLU F:127BINDING SITE FOR RESIDUE FE F 300
20CC2SOFTWAREARG F:117 , HOH F:167 , HOH F:274 , ARG I:117 , ARG K:117BINDING SITE FOR RESIDUE SO4 F 159
21CC3SOFTWAREARG F:57 , MET F:119 , ARG I:125BINDING SITE FOR RESIDUE SO4 F 160
22CC4SOFTWAREGLY G:145 , LEU G:146 , GLN G:147 , HOH G:172 , HOH G:220 , HOH G:360 , HOH G:481BINDING SITE FOR RESIDUE SO4 G 250
23CC5SOFTWAREGLU G:18 , GLU G:51 , HIS G:54 , GLU G:127BINDING SITE FOR RESIDUE FE G 300
24CC6SOFTWAREILE G:22 , ASN G:23 , PHE G:26 , TYR G:45 , MET G:52 , ALA G:55 , ASP G:56 , HOH G:162 , LEU H:19 , ASN H:23 , PHE H:26 , TYR H:45 , MET H:52 , HOH H:170 , HOH H:331BINDING SITE FOR RESIDUE HEM G 200
25CC7SOFTWAREARG E:117 , ARG G:117 , HOH G:165 , HOH G:273 , HOH G:453 , ARG L:117BINDING SITE FOR RESIDUE SO4 G 159
26CC8SOFTWAREARG E:125 , ARG G:57 , MET G:119BINDING SITE FOR RESIDUE SO4 G 160
27CC9SOFTWAREGLY H:145 , LEU H:146 , GLN H:147BINDING SITE FOR RESIDUE SO4 H 250
28DC1SOFTWAREGLU H:18 , GLU H:51 , HIS H:54 , GLU H:127BINDING SITE FOR RESIDUE FE H 300
29DC2SOFTWAREGLY I:145 , LEU I:146 , GLN I:147 , HOH I:163BINDING SITE FOR RESIDUE SO4 I 250
30DC3SOFTWAREGLU I:18 , GLU I:51 , HIS I:54 , GLU I:127BINDING SITE FOR RESIDUE FE I 300
31DC4SOFTWAREILE I:22 , ASN I:23 , PHE I:26 , TYR I:45 , ILE I:49 , MET I:52 , ALA I:55 , ASP I:56 , HOH I:415 , ASN J:23 , PHE J:26 , TYR J:45 , MET J:52 , HOH J:344 , HOH J:392BINDING SITE FOR RESIDUE HEM I 200
32DC5SOFTWAREGLY J:145 , LEU J:146 , GLN J:147 , HOH J:473BINDING SITE FOR RESIDUE SO4 J 250
33DC6SOFTWAREGLU J:18 , GLU J:51 , HIS J:54 , GLU J:127BINDING SITE FOR RESIDUE FE J 300
34DC7SOFTWAREGLY K:145 , LEU K:146 , GLN K:147BINDING SITE FOR RESIDUE SO4 K 250
35DC8SOFTWAREGLU K:18 , GLU K:51 , HIS K:54 , GLU K:127BINDING SITE FOR RESIDUE FE K 300
36DC9SOFTWAREARG F:125 , ARG K:57 , MET K:119 , HOH K:525BINDING SITE FOR RESIDUE SO4 K 159
37EC1SOFTWAREILE K:22 , ASN K:23 , PHE K:26 , TYR K:45 , MET K:52 , ALA K:55 , ASP K:56 , ASN L:23 , PHE L:26 , TYR L:45 , MET L:52 , HOH L:350BINDING SITE FOR RESIDUE HEM L 200
38EC2SOFTWAREGLY L:145 , LEU L:146 , GLN L:147 , HOH L:166BINDING SITE FOR RESIDUE SO4 L 250
39EC3SOFTWAREGLU L:18 , GLU L:51 , HIS L:54 , GLU L:127BINDING SITE FOR RESIDUE FE L 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GHQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GHQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 120)

Asymmetric Unit (10, 120)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BFR_ECOLI_001 *K38MBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LK38M
02UniProtVAR_BFR_ECOLI_002 *R57KBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR57K
03UniProtVAR_BFR_ECOLI_003 *L68IBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LL68I
04UniProtVAR_BFR_ECOLI_004 *N78GBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN78G
05UniProtVAR_BFR_ECOLI_005 *R88QBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR88Q
06UniProtVAR_BFR_ECOLI_006 *A92RBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LA92R
07UniProtVAR_BFR_ECOLI_007 *D96EBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LD96E
08UniProtVAR_BFR_ECOLI_008 *N100DBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN100D
09UniProtVAR_BFR_ECOLI_009 *G106ABFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LG106A
10UniProtVAR_BFR_ECOLI_010 *R125ABFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR125A
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (10, 240)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BFR_ECOLI_001 *K38MBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LK38M
02UniProtVAR_BFR_ECOLI_002 *R57KBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR57K
03UniProtVAR_BFR_ECOLI_003 *L68IBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LL68I
04UniProtVAR_BFR_ECOLI_004 *N78GBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN78G
05UniProtVAR_BFR_ECOLI_005 *R88QBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR88Q
06UniProtVAR_BFR_ECOLI_006 *A92RBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LA92R
07UniProtVAR_BFR_ECOLI_007 *D96EBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LD96E
08UniProtVAR_BFR_ECOLI_008 *N100DBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN100D
09UniProtVAR_BFR_ECOLI_009 *G106ABFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LG106A
10UniProtVAR_BFR_ECOLI_010 *R125ABFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR125A
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 24)

Asymmetric Unit (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIOFERRITINPS00549 Bacterioferritin signature.BFR_ECOLI1-19
 
 
 
 
 
 
 
 
 
 
 
  12A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
G:1-19
H:1-19
I:1-19
J:1-19
K:1-19
L:1-19
2FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_ECOLI1-145
 
 
 
 
 
 
 
 
 
 
 
  12A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
G:1-145
H:1-145
I:1-145
J:1-145
K:1-145
L:1-145
Biological Unit 1 (2, 48)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIOFERRITINPS00549 Bacterioferritin signature.BFR_ECOLI1-19
 
 
 
 
 
 
 
 
 
 
 
  24A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
G:1-19
H:1-19
I:1-19
J:1-19
K:1-19
L:1-19
2FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_ECOLI1-145
 
 
 
 
 
 
 
 
 
 
 
  24A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
G:1-145
H:1-145
I:1-145
J:1-145
K:1-145
L:1-145

(-) Exons   (0, 0)

(no "Exon" information available for 3GHQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqa_ A: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqA00 A:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: A:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq A   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain B from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqb_ B: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqB00 B:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: B:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq B   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain C from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqc_ C: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqC00 C:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: C:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq C   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain D from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqd_ D: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqD00 D:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: D:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq D   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain E from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqe_ E: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqE00 E:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: E:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq E   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain F from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqf_ F: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqF00 F:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: F:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq F   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain G from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqg_ G: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqG00 G:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: G:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq G   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain H from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqh_ H: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqH00 H:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: H:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq H   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain I from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqi_ I: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqI00 I:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: I:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq I   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain J from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqj_ J: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqJ00 J:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: J:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq J   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain K from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghqk_ K: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqK00 K:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: K:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq K   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain L from PDB  Type:PROTEIN  Length:158
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
               SCOP domains d3ghql_ L: Bacterioferritin (cytochrome b1)                                                                                                                    SCOP domains
               CATH domains 3ghqL00 L:1-158  [code=1.20.1260.10, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A--------------------------------- SAPs(SNPs)
                PROSITE (1) FERRITIN_LIKE  PDB: L:1-145 UniProt: 1-145                                                                                                       ------------- PROSITE (1)
                PROSITE (2) BACTERIOFERRITIN   ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ghq L   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNFGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit

(-) CATH Domains  (1, 12)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GHQ)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (BFR_ECOLI | P0ABD3)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0004322    ferroxidase activity    Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0006880    intracellular sequestering of iron ion    The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system.
    GO:0006826    iron ion transport    The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BFR_ECOLI | P0ABD31bcf 1bfr 2htn 2vxi 2y3q 3e1j 3e1l 3e1m 3e1n 3e1o 3e1p 3e1q 3e2c 4cvp 4cvr 4cvs 4cvt 4u3g 4xks 4xkt 4xku

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3GHQ)