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Getting 'PROSITE' information from database.
3GHQ
Biol. Unit 1
Info
Asym.Unit (345 KB)
Biol.Unit 1 (662 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI W35F BFR MUTANT
Authors
:
A. Crow, T. L. Lawson, A. Lewin, G. R. Moore, N. E. Le Brun
Date
:
04 Mar 09 (Deposition) - 06 Oct 09 (Release) - 06 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (2x)
Keywords
:
Bfr, W35F, Heme, Iron, Iron Storage, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. L. Lawson, A. Crow, A. Lewin, S. Yasmin, G. R. Moore, N. E. Le Brun
Monitoring The Iron Status Of The Ferroxidase Center Of Escherichia Coli Bacterioferritin Using Fluorescence Spectroscopy.
Biochemistry V. 48 9031 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 54)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
1g: FE (III) ION (FEg)
1h: FE (III) ION (FEh)
1i: FE (III) ION (FEi)
1j: FE (III) ION (FEj)
1k: FE (III) ION (FEk)
1l: FE (III) ION (FEl)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
HEM
12
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
SO4
42
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:145 , LEU A:146 , GLN A:147 , HOH A:325
BINDING SITE FOR RESIDUE SO4 A 250
02
AC2
SOFTWARE
GLU A:18 , GLU A:51 , HIS A:54 , GLU A:127
BINDING SITE FOR RESIDUE FE A 300
03
AC3
SOFTWARE
ILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , MET A:52 , ALA A:55 , ASP A:56 , HOH A:317 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , MET B:52 , HOH B:316
BINDING SITE FOR RESIDUE HEM A 200
04
AC4
SOFTWARE
ARG A:117 , ARG D:117 , ARG J:117
BINDING SITE FOR RESIDUE SO4 A 159
05
AC5
SOFTWARE
ARG A:57 , MET A:119 , HOH A:168 , ARG J:125
BINDING SITE FOR RESIDUE SO4 A 160
06
AC6
SOFTWARE
GLY B:145 , LEU B:146 , GLN B:147 , HOH B:173
BINDING SITE FOR RESIDUE SO4 B 250
07
AC7
SOFTWARE
GLU B:18 , GLU B:51 , HIS B:54 , GLU B:127
BINDING SITE FOR RESIDUE FE B 300
08
AC8
SOFTWARE
ARG B:117 , ARG C:117 , ARG H:117 , HOH H:265
BINDING SITE FOR RESIDUE SO4 B 159
09
AC9
SOFTWARE
GLY C:145 , LEU C:146 , GLN C:147 , HOH C:164 , HOH C:167 , HOH C:272
BINDING SITE FOR RESIDUE SO4 C 250
10
BC1
SOFTWARE
GLU C:18 , GLU C:51 , HIS C:54 , GLU C:127
BINDING SITE FOR RESIDUE FE C 300
11
BC2
SOFTWARE
ARG C:57 , MET C:119 , ARG H:125
BINDING SITE FOR RESIDUE SO4 C 159
12
BC3
SOFTWARE
ILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , MET C:52 , ALA C:55 , HOH C:160 , LEU D:19 , ILE D:22 , ASN D:23 , PHE D:26 , TYR D:45 , MET D:52 , HOH D:176 , HOH D:313
BINDING SITE FOR RESIDUE HEM D 200
13
BC4
SOFTWARE
GLY D:145 , LEU D:146 , GLN D:147 , HOH D:162
BINDING SITE FOR RESIDUE SO4 D 250
14
BC5
SOFTWARE
GLU D:18 , GLU D:51 , HIS D:54 , GLU D:127
BINDING SITE FOR RESIDUE FE D 300
15
BC6
SOFTWARE
GLY E:145 , LEU E:146 , GLN E:147
BINDING SITE FOR RESIDUE SO4 E 250
16
BC7
SOFTWARE
GLU E:18 , GLU E:51 , HIS E:54 , GLU E:127
BINDING SITE FOR RESIDUE FE E 300
17
BC8
SOFTWARE
ILE E:22 , ASN E:23 , PHE E:26 , TYR E:45 , MET E:52 , ASP E:56 , HOH E:171 , ILE F:22 , ASN F:23 , PHE F:26 , TYR F:45 , MET F:52 , HOH F:161 , HOH F:194 , HOH F:327
BINDING SITE FOR RESIDUE HEM F 200
18
BC9
SOFTWARE
GLY F:145 , LEU F:146 , GLN F:147
BINDING SITE FOR RESIDUE SO4 F 250
19
CC1
SOFTWARE
GLU F:18 , GLU F:51 , HIS F:54 , GLU F:127
BINDING SITE FOR RESIDUE FE F 300
20
CC2
SOFTWARE
ARG F:117 , HOH F:167 , HOH F:274 , ARG I:117 , ARG K:117
BINDING SITE FOR RESIDUE SO4 F 159
21
CC3
SOFTWARE
ARG F:57 , MET F:119 , ARG I:125
BINDING SITE FOR RESIDUE SO4 F 160
22
CC4
SOFTWARE
GLY G:145 , LEU G:146 , GLN G:147 , HOH G:172 , HOH G:220 , HOH G:360 , HOH G:481
BINDING SITE FOR RESIDUE SO4 G 250
23
CC5
SOFTWARE
GLU G:18 , GLU G:51 , HIS G:54 , GLU G:127
BINDING SITE FOR RESIDUE FE G 300
24
CC6
SOFTWARE
ILE G:22 , ASN G:23 , PHE G:26 , TYR G:45 , MET G:52 , ALA G:55 , ASP G:56 , HOH G:162 , LEU H:19 , ASN H:23 , PHE H:26 , TYR H:45 , MET H:52 , HOH H:170 , HOH H:331
BINDING SITE FOR RESIDUE HEM G 200
25
CC7
SOFTWARE
ARG E:117 , ARG G:117 , HOH G:165 , HOH G:273 , HOH G:453 , ARG L:117
BINDING SITE FOR RESIDUE SO4 G 159
26
CC8
SOFTWARE
ARG E:125 , ARG G:57 , MET G:119
BINDING SITE FOR RESIDUE SO4 G 160
27
CC9
SOFTWARE
GLY H:145 , LEU H:146 , GLN H:147
BINDING SITE FOR RESIDUE SO4 H 250
28
DC1
SOFTWARE
GLU H:18 , GLU H:51 , HIS H:54 , GLU H:127
BINDING SITE FOR RESIDUE FE H 300
29
DC2
SOFTWARE
GLY I:145 , LEU I:146 , GLN I:147 , HOH I:163
BINDING SITE FOR RESIDUE SO4 I 250
30
DC3
SOFTWARE
GLU I:18 , GLU I:51 , HIS I:54 , GLU I:127
BINDING SITE FOR RESIDUE FE I 300
31
DC4
SOFTWARE
ILE I:22 , ASN I:23 , PHE I:26 , TYR I:45 , ILE I:49 , MET I:52 , ALA I:55 , ASP I:56 , HOH I:415 , ASN J:23 , PHE J:26 , TYR J:45 , MET J:52 , HOH J:344 , HOH J:392
BINDING SITE FOR RESIDUE HEM I 200
32
DC5
SOFTWARE
GLY J:145 , LEU J:146 , GLN J:147 , HOH J:473
BINDING SITE FOR RESIDUE SO4 J 250
33
DC6
SOFTWARE
GLU J:18 , GLU J:51 , HIS J:54 , GLU J:127
BINDING SITE FOR RESIDUE FE J 300
34
DC7
SOFTWARE
GLY K:145 , LEU K:146 , GLN K:147
BINDING SITE FOR RESIDUE SO4 K 250
35
DC8
SOFTWARE
GLU K:18 , GLU K:51 , HIS K:54 , GLU K:127
BINDING SITE FOR RESIDUE FE K 300
36
DC9
SOFTWARE
ARG F:125 , ARG K:57 , MET K:119 , HOH K:525
BINDING SITE FOR RESIDUE SO4 K 159
37
EC1
SOFTWARE
ILE K:22 , ASN K:23 , PHE K:26 , TYR K:45 , MET K:52 , ALA K:55 , ASP K:56 , ASN L:23 , PHE L:26 , TYR L:45 , MET L:52 , HOH L:350
BINDING SITE FOR RESIDUE HEM L 200
38
EC2
SOFTWARE
GLY L:145 , LEU L:146 , GLN L:147 , HOH L:166
BINDING SITE FOR RESIDUE SO4 L 250
39
EC3
SOFTWARE
GLU L:18 , GLU L:51 , HIS L:54 , GLU L:127
BINDING SITE FOR RESIDUE FE L 300
[
close Site info
]
SAPs(SNPs)/Variants
(10, 240)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_BFR_ECOLI_001 (K38M, chain A/B/C/D/E/F/G/H/I/J/K/L, )
02: VAR_BFR_ECOLI_002 (R57K, chain A/B/C/D/E/F/G/H/I/J/K/L, )
03: VAR_BFR_ECOLI_003 (L68I, chain A/B/C/D/E/F/G/H/I/J/K/L, )
04: VAR_BFR_ECOLI_004 (N78G, chain A/B/C/D/E/F/G/H/I/J/K/L, )
05: VAR_BFR_ECOLI_005 (R88Q, chain A/B/C/D/E/F/G/H/I/J/K/L, )
06: VAR_BFR_ECOLI_006 (A92R, chain A/B/C/D/E/F/G/H/I/J/K/L, )
07: VAR_BFR_ECOLI_007 (D96E, chain A/B/C/D/E/F/G/H/I/J/K/L, )
08: VAR_BFR_ECOLI_008 (N100D, chain A/B/C/D/E/F/G/H/I/J/K/L, )
09: VAR_BFR_ECOLI_009 (G106A, chain A/B/C/D/E/F/G/H/I/J/K/L, )
10: VAR_BFR_ECOLI_010 (R125A, chain A/B/C/D/E/F/G/H/I/J/K/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_BFR_ECOLI_001
*
K
38
M
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
K
38
M
02
UniProt
VAR_BFR_ECOLI_002
*
R
57
K
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
R
57
K
03
UniProt
VAR_BFR_ECOLI_003
*
L
68
I
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
L
68
I
04
UniProt
VAR_BFR_ECOLI_004
*
N
78
G
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
N
78
G
05
UniProt
VAR_BFR_ECOLI_005
*
R
88
Q
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
R
88
Q
06
UniProt
VAR_BFR_ECOLI_006
*
A
92
R
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
A
92
R
07
UniProt
VAR_BFR_ECOLI_007
*
D
96
E
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
D
96
E
08
UniProt
VAR_BFR_ECOLI_008
*
N
100
D
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
N
100
D
09
UniProt
VAR_BFR_ECOLI_009
*
G
106
A
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
G
106
A
10
UniProt
VAR_BFR_ECOLI_010
*
R
125
A
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
R
125
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 48)
Info
All PROSITE Patterns/Profiles
1: BACTERIOFERRITIN (A:1-19,B:1-19,C:1-19,D:1-19,E:1-19...)
2: FERRITIN_LIKE (A:1-145,B:1-145,C:1-145,D:1-145,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BACTERIOFERRITIN
PS00549
Bacterioferritin signature.
BFR_ECOLI
1-19
24
A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
G:1-19
H:1-19
I:1-19
J:1-19
K:1-19
L:1-19
2
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
BFR_ECOLI
1-145
24
A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
G:1-145
H:1-145
I:1-145
J:1-145
K:1-145
L:1-145
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3ghqa_ (A:)
1b: SCOP_d3ghqi_ (I:)
1c: SCOP_d3ghqj_ (J:)
1d: SCOP_d3ghqk_ (K:)
1e: SCOP_d3ghql_ (L:)
1f: SCOP_d3ghqb_ (B:)
1g: SCOP_d3ghqc_ (C:)
1h: SCOP_d3ghqd_ (D:)
1i: SCOP_d3ghqe_ (E:)
1j: SCOP_d3ghqf_ (F:)
1k: SCOP_d3ghqg_ (G:)
1l: SCOP_d3ghqh_ (H:)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Bacterioferritin (cytochrome b1)
(19)
Escherichia coli K-12 [TaxId: 83333]
(3)
1a
d3ghqa_
A:
1b
d3ghqi_
I:
1c
d3ghqj_
J:
1d
d3ghqk_
K:
1e
d3ghql_
L:
1f
d3ghqb_
B:
1g
d3ghqc_
C:
1h
d3ghqd_
D:
1i
d3ghqe_
E:
1j
d3ghqf_
F:
1k
d3ghqg_
G:
1l
d3ghqh_
H:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3ghqA00 (A:1-158)
1b: CATH_3ghqB00 (B:1-158)
1c: CATH_3ghqK00 (K:1-158)
1d: CATH_3ghqL00 (L:1-158)
1e: CATH_3ghqC00 (C:1-158)
1f: CATH_3ghqD00 (D:1-158)
1g: CATH_3ghqE00 (E:1-158)
1h: CATH_3ghqF00 (F:1-158)
1i: CATH_3ghqG00 (G:1-158)
1j: CATH_3ghqH00 (H:1-158)
1k: CATH_3ghqI00 (I:1-158)
1l: CATH_3ghqJ00 (J:1-158)
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)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Escherichia coli k-12. Organism_taxid: 83333.
(1)
1a
3ghqA00
A:1-158
1b
3ghqB00
B:1-158
1c
3ghqK00
K:1-158
1d
3ghqL00
L:1-158
1e
3ghqC00
C:1-158
1f
3ghqD00
D:1-158
1g
3ghqE00
E:1-158
1h
3ghqF00
F:1-158
1i
3ghqG00
G:1-158
1j
3ghqH00
H:1-158
1k
3ghqI00
I:1-158
1l
3ghqJ00
J:1-158
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
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)
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All Atoms
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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