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(-) Description

Title :  CRYSTAL STRUCTURE OF E. COLI BACTERIOFERRITIN (BFR) WITH TWO ZN(II) ION SITES AT THE FERROXIDASE CENTRE (ZN-BFR).
 
Authors :  A. Crow, T. Lawson, A. Lewin, G. R. Moore, N. Le Brun
Date :  04 Aug 08  (Deposition) - 05 May 09  (Release) - 26 May 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L  (2x)
Keywords :  Bacterioferritin. Rhombic Dodecahedral Superstructure. , Heme, Iron, Iron Storage, Metal-Binding, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Crow, T. L. Lawson, A. Lewin, G. R. Moore, N. E. Le Brun
Structural Basis For Iron Mineralization By Bacterioferritin
J. Am. Chem. Soc. V. 131 6808 2009
PubMed-ID: 19391621  |  Reference-DOI: 10.1021/JA8093444
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BACTERIOFERRITIN
    ChainsA, B, C, D, E, F, G, H, I, J, K, L
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPALN1
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneBFR
    Organism ScientificESCHERICHIA COLI
    Organism Taxid83333
    StrainK-12
    SynonymBFR, CYTOCHROME B-1, CYTOCHROME B-557

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (2x)ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 46)

Asymmetric Unit (3, 46)
No.NameCountTypeFull Name
1HEM6Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2SO416Ligand/IonSULFATE ION
3ZN24Ligand/IonZINC ION
Biological Unit 1 (2, 44)
No.NameCountTypeFull Name
1HEM12Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2SO432Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (46, 46)

Asymmetric Unit (46, 46)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:145 , LEU A:146 , GLN A:147BINDING SITE FOR RESIDUE SO4 A 250
02AC2SOFTWAREGLU A:18 , GLU A:51 , HIS A:54 , GLU A:127BINDING SITE FOR RESIDUE ZN A 300
03AC3SOFTWAREGLU A:51 , GLU A:94 , GLU A:127 , HIS A:130BINDING SITE FOR RESIDUE ZN A 301
04AC4SOFTWAREARG A:117 , ARG D:117 , ARG J:117 , HOH J:319BINDING SITE FOR RESIDUE SO4 A 302
05AC5SOFTWAREILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , ILE A:49 , MET A:52 , ALA A:55 , ASP A:56 , HOH A:311 , LEU B:19 , ASN B:23 , PHE B:26 , TYR B:45 , MET B:52 , HOH B:319BINDING SITE FOR RESIDUE HEM A 200
06AC6SOFTWAREGLY B:145 , LEU B:146 , GLN B:147BINDING SITE FOR RESIDUE SO4 B 250
07AC7SOFTWAREGLU B:18 , GLU B:51 , HIS B:54 , GLU B:127BINDING SITE FOR RESIDUE ZN B 300
08AC8SOFTWAREGLU B:51 , GLU B:94 , GLU B:127 , HIS B:130BINDING SITE FOR RESIDUE ZN B 301
09AC9SOFTWAREGLY C:145 , LEU C:146 , GLN C:147BINDING SITE FOR RESIDUE SO4 C 250
10BC1SOFTWAREGLU C:18 , GLU C:51 , HIS C:54 , GLU C:127BINDING SITE FOR RESIDUE ZN C 300
11BC2SOFTWAREGLU C:51 , GLU C:94 , GLU C:127 , HIS C:130BINDING SITE FOR RESIDUE ZN C 301
12BC3SOFTWAREARG B:117 , ARG C:117 , HOH C:316 , ARG H:117BINDING SITE FOR RESIDUE SO4 C 302
13BC4SOFTWAREGLY D:145 , LEU D:146 , GLN D:147BINDING SITE FOR RESIDUE SO4 D 250
14BC5SOFTWAREGLU D:18 , GLU D:51 , HIS D:54 , GLU D:127BINDING SITE FOR RESIDUE ZN D 300
15BC6SOFTWAREGLU D:51 , GLU D:94 , GLU D:127 , HIS D:130BINDING SITE FOR RESIDUE ZN D 301
16BC7SOFTWAREILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , ILE C:49 , MET C:52 , ALA C:55 , HOH C:308 , LEU D:19 , ASN D:23 , PHE D:26 , TYR D:45 , MET D:52 , HOH D:309BINDING SITE FOR RESIDUE HEM D 200
17BC8SOFTWAREGLY E:145 , LEU E:146 , GLN E:147BINDING SITE FOR RESIDUE SO4 E 250
18BC9SOFTWAREGLU E:18 , GLU E:51 , HIS E:54 , GLU E:127BINDING SITE FOR RESIDUE ZN E 300
19CC1SOFTWAREGLU E:51 , GLU E:94 , GLU E:127 , HIS E:130BINDING SITE FOR RESIDUE ZN E 301
20CC2SOFTWAREASN E:23 , PHE E:26 , TYR E:45 , ILE E:49 , MET E:52 , ALA E:55 , ASP E:56 , HOH E:314 , LEU F:19 , ILE F:22 , ASN F:23 , PHE F:26 , TYR F:45 , MET F:52 , HOH F:311BINDING SITE FOR RESIDUE HEM E 200
21CC3SOFTWAREGLY F:145 , LEU F:146 , GLN F:147BINDING SITE FOR RESIDUE SO4 F 250
22CC4SOFTWAREGLU F:18 , GLU F:51 , HIS F:54 , GLU F:127BINDING SITE FOR RESIDUE ZN F 300
23CC5SOFTWAREGLU F:51 , GLU F:94 , GLU F:127 , HIS F:130BINDING SITE FOR RESIDUE ZN F 301
24CC6SOFTWAREARG F:117 , HOH F:323 , ARG I:117 , ARG K:117BINDING SITE FOR RESIDUE SO4 F 302
25CC7SOFTWAREGLY G:145 , LEU G:146 , GLN G:147BINDING SITE FOR RESIDUE SO4 G 250
26CC8SOFTWAREGLU G:18 , GLU G:51 , HIS G:54 , GLU G:127BINDING SITE FOR RESIDUE ZN G 300
27CC9SOFTWAREGLU G:51 , GLU G:94 , GLU G:127 , HIS G:130BINDING SITE FOR RESIDUE ZN G 301
28DC1SOFTWAREARG E:117 , ARG G:117 , ARG L:117BINDING SITE FOR RESIDUE SO4 G 302
29DC2SOFTWAREGLY H:145 , LEU H:146 , GLN H:147BINDING SITE FOR RESIDUE SO4 H 250
30DC3SOFTWAREGLU H:18 , GLU H:51 , HIS H:54 , GLU H:127BINDING SITE FOR RESIDUE ZN H 300
31DC4SOFTWAREGLU H:51 , GLU H:94 , GLU H:127 , HIS H:130BINDING SITE FOR RESIDUE ZN H 301
32DC5SOFTWAREILE G:22 , ASN G:23 , PHE G:26 , TYR G:45 , MET G:52 , ALA G:55 , HOH G:311 , LEU H:19 , ASN H:23 , PHE H:26 , TYR H:45 , MET H:52 , HOH H:306BINDING SITE FOR RESIDUE HEM H 200
33DC6SOFTWAREGLY I:145 , LEU I:146 , GLN I:147BINDING SITE FOR RESIDUE SO4 I 250
34DC7SOFTWAREGLU I:18 , GLU I:51 , HIS I:54 , GLU I:127BINDING SITE FOR RESIDUE ZN I 300
35DC8SOFTWAREGLU I:51 , GLU I:94 , GLU I:127 , HIS I:130BINDING SITE FOR RESIDUE ZN I 301
36DC9SOFTWAREILE I:22 , ASN I:23 , PHE I:26 , TYR I:45 , ILE I:49 , MET I:52 , ALA I:55 , LEU J:19 , ASN J:23 , PHE J:26 , TYR J:45 , ILE J:49 , MET J:52 , HOH J:309 , HOH J:310BINDING SITE FOR RESIDUE HEM I 200
37EC1SOFTWAREGLY J:145 , LEU J:146 , GLN J:147BINDING SITE FOR RESIDUE SO4 J 250
38EC2SOFTWAREGLU J:18 , GLU J:51 , HIS J:54 , GLU J:127BINDING SITE FOR RESIDUE ZN J 300
39EC3SOFTWAREGLU J:51 , GLU J:94 , GLU J:127 , HIS J:130BINDING SITE FOR RESIDUE ZN J 301
40EC4SOFTWAREGLY K:145 , LEU K:146 , GLN K:147BINDING SITE FOR RESIDUE SO4 K 250
41EC5SOFTWAREGLU K:18 , GLU K:51 , HIS K:54 , GLU K:127BINDING SITE FOR RESIDUE ZN K 300
42EC6SOFTWAREGLU K:51 , GLU K:94 , GLU K:127 , HIS K:130BINDING SITE FOR RESIDUE ZN K 301
43EC7SOFTWAREILE K:22 , ASN K:23 , PHE K:26 , TYR K:45 , ILE K:49 , MET K:52 , ALA K:55 , ASP K:56 , HOH K:317 , LEU L:19 , ILE L:22 , ASN L:23 , PHE L:26 , TYR L:45 , MET L:52 , HOH L:306BINDING SITE FOR RESIDUE HEM K 200
44EC8SOFTWAREGLY L:145 , LEU L:146 , GLN L:147BINDING SITE FOR RESIDUE SO4 L 250
45EC9SOFTWAREGLU L:18 , GLU L:51 , HIS L:54 , GLU L:127BINDING SITE FOR RESIDUE ZN L 300
46FC1SOFTWAREGLU L:51 , GLU L:94 , GLU L:127 , HIS L:130BINDING SITE FOR RESIDUE ZN L 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E1O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3E1O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 120)

Asymmetric Unit (10, 120)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BFR_ECOLI_001 *K38MBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LK38M
02UniProtVAR_BFR_ECOLI_002 *R57KBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR57K
03UniProtVAR_BFR_ECOLI_003 *L68IBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LL68I
04UniProtVAR_BFR_ECOLI_004 *N78GBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN78G
05UniProtVAR_BFR_ECOLI_005 *R88QBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR88Q
06UniProtVAR_BFR_ECOLI_006 *A92RBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LA92R
07UniProtVAR_BFR_ECOLI_007 *D96EBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LD96E
08UniProtVAR_BFR_ECOLI_008 *N100DBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN100D
09UniProtVAR_BFR_ECOLI_009 *G106ABFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LG106A
10UniProtVAR_BFR_ECOLI_010 *R125ABFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR125A
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (10, 240)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BFR_ECOLI_001 *K38MBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LK38M
02UniProtVAR_BFR_ECOLI_002 *R57KBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR57K
03UniProtVAR_BFR_ECOLI_003 *L68IBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LL68I
04UniProtVAR_BFR_ECOLI_004 *N78GBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN78G
05UniProtVAR_BFR_ECOLI_005 *R88QBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR88Q
06UniProtVAR_BFR_ECOLI_006 *A92RBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LA92R
07UniProtVAR_BFR_ECOLI_007 *D96EBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LD96E
08UniProtVAR_BFR_ECOLI_008 *N100DBFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LN100D
09UniProtVAR_BFR_ECOLI_009 *G106ABFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LG106A
10UniProtVAR_BFR_ECOLI_010 *R125ABFR_ECOLI  ---  ---A/B/C/D/E/F/G/H/I/J/K/LR125A
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 24)

Asymmetric Unit (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIOFERRITINPS00549 Bacterioferritin signature.BFR_ECOLI1-19
 
 
 
 
 
 
 
 
 
 
 
  12A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
G:1-19
H:1-19
I:1-19
J:1-19
K:1-19
L:1-19
2FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_ECOLI1-145
 
 
 
 
 
 
 
 
 
 
 
  12A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
G:1-145
H:1-145
I:1-145
J:1-145
K:1-145
L:1-145
Biological Unit 1 (2, 48)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIOFERRITINPS00549 Bacterioferritin signature.BFR_ECOLI1-19
 
 
 
 
 
 
 
 
 
 
 
  24A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
G:1-19
H:1-19
I:1-19
J:1-19
K:1-19
L:1-19
2FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_ECOLI1-145
 
 
 
 
 
 
 
 
 
 
 
  24A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
G:1-145
H:1-145
I:1-145
J:1-145
K:1-145
L:1-145

(-) Exons   (0, 0)

(no "Exon" information available for 3E1O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1oa_ A: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oA00 A:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: A:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o A   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain B from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1ob_ B: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oB00 B:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: B:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o B   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain C from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1oc_ C: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oC00 C:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: C:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o C   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain D from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1od_ D: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oD00 D:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: D:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o D   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain E from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1oe_ E: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oE00 E:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: E:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o E   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain F from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1of_ F: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oF00 F:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: F:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o F   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain G from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1og_ G: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oG00 G:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: G:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o G   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain H from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1oh_ H: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oH00 H:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: H:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o H   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain I from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1oi_ I: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oI00 I:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: I:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o I   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain J from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1oj_ J: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oJ00 J:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: J:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o J   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain K from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1ok_ K: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oK00 K:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: K:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o K   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain L from PDB  Type:PROTEIN  Length:156
 aligned with BFR_ECOLI | P0ABD3 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
            BFR_ECOLI     1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
               SCOP domains d3e1ol_ L: Bacterioferritin (cytochrome b1)                                                                                                                  SCOP domains
               CATH domains 3e1oL00 L:1-156  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------M------------------K----------I---------G---------Q---R---E---D-----A------------------A------------------------------- SAPs(SNPs)
                PROSITE (1) BACTERIOFERRITIN   ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) FERRITIN_LIKE  PDB: L:1-145 UniProt: 1-145                                                                                                       ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e1o L   1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIRE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit

(-) CATH Domains  (1, 12)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E1O)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (BFR_ECOLI | P0ABD3)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0004322    ferroxidase activity    Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0006880    intracellular sequestering of iron ion    The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system.
    GO:0006826    iron ion transport    The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BFR_ECOLI | P0ABD31bcf 1bfr 2htn 2vxi 2y3q 3e1j 3e1l 3e1m 3e1n 3e1p 3e1q 3e2c 3ghq 4cvp 4cvr 4cvs 4cvt 4u3g 4xks 4xkt 4xku

(-) Related Entries Specified in the PDB File

3e1j 3e1l 3e1m 3e1n 3e1p 3e1q