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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CARBOXYL-TERMINAL DOMAIN OF YEAST DNA POLYMERASE ALPHA IN COMPLEX WITH ITS B SUBUNIT
 
Authors :  S. N. Klinge, L. Pellegrini
Date :  19 Dec 08  (Deposition) - 09 Jun 09  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,K  (1x)
Biol. Unit 2:  C,D,L  (1x)
Biol. Unit 3:  E,F,I  (1x)
Biol. Unit 4:  G,H,J  (1x)
Keywords :  Protein-Protein Complex, Phosphoesterase Fold, Ob Fold, Zinc-Binding Motif, Dna Replication, Nucleus, Phosphoprotein, Dna-Binding, Dna- Directed Dna Polymerase, Nucleotidyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Klinge, R. Nunez-Ramirez, O. Llorca, L. Pellegrini
3D Architecture Of Dna Pol Alpha Reveals The Functional Cor Of Multi-Subunit Replicative Polymerases
Embo J. V. 28 1978 2009
PubMed-ID: 19494830  |  Reference-DOI: 10.1038/EMBOJ.2009.150

(-) Compounds

Molecule 1 - DNA POLYMERASE ALPHA SUBUNIT B
    Chains: A, C, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: RSF1-DUET
    Expression System Strain: BL21(DE3)ROSETTA2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 246-705
    Gene: POL12
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
 
Molecule 2 - DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A
    Chains: I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: RSF1-DUET
    Expression System Strain: BL21(DE3)ROSETTA2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL PARTS OF CHAINS B, D, F, H
    Gene: POL1, CDC17
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
 
Molecule 3 - DNA POLYMERASE ALPHA CATALYTIC SUBUNIT A
    Chains: B, D, F, H
    EC Number: 2.7.7.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: RSF1-DUET
    Expression System Strain: BL21(DE3)ROSETTA2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CYSTEINE-RICH C-TERMINAL DOMAIN, UNP RESIDUES 1263-1468
    Gene: POL1, CDC17
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): AB        K 
Biological Unit 2 (1x):   CD       L
Biological Unit 3 (1x):     EF  I   
Biological Unit 4 (1x):       GH J  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 85)

Asymmetric Unit (3, 85)
No.NameCountTypeFull Name
1SO465Ligand/IonSULFATE ION
2UNK12Mod. Amino Acid
3ZN8Ligand/IonZINC ION
Biological Unit 1 (1, 19)
No.NameCountTypeFull Name
1SO419Ligand/IonSULFATE ION
2UNK-1Mod. Amino Acid
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 15)
No.NameCountTypeFull Name
1SO415Ligand/IonSULFATE ION
2UNK-1Mod. Amino Acid
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 16)
No.NameCountTypeFull Name
1SO416Ligand/IonSULFATE ION
2UNK-1Mod. Amino Acid
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 15)
No.NameCountTypeFull Name
1SO415Ligand/IonSULFATE ION
2UNK-1Mod. Amino Acid
3ZN-1Ligand/IonZINC ION

(-) Sites  (73, 73)

Asymmetric Unit (73, 73)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:559 , GLU A:562 , HIS A:563 , GLN A:566BINDING SITE FOR RESIDUE SO4 A 3
02AC2SOFTWAREARG A:554 , TYR A:555 , ARG A:556BINDING SITE FOR RESIDUE SO4 A 5
03AC3SOFTWAREHOH A:133 , ARG A:505 , LYS A:512BINDING SITE FOR RESIDUE SO4 A 12
04AC4SOFTWAREARG A:505 , LYS A:506BINDING SITE FOR RESIDUE SO4 A 13
05AC5SOFTWARELYS A:455 , THR A:456 , GLN A:457 , HOH A:717BINDING SITE FOR RESIDUE SO4 A 30
06AC6SOFTWARELYS A:455 , THR A:456 , LYS A:467 , HOH A:760BINDING SITE FOR RESIDUE SO4 A 31
07AC7SOFTWAREALA A:501 , SER A:502BINDING SITE FOR RESIDUE SO4 A 32
08AC8SOFTWAREGLU A:293 , LYS A:353BINDING SITE FOR RESIDUE SO4 A 34
09AC9SOFTWAREILE A:271 , PRO A:369 , TYR A:370 , ARG A:568BINDING SITE FOR RESIDUE SO4 A 35
10BC1SOFTWARESER A:290 , GLN A:291 , SER A:292BINDING SITE FOR RESIDUE SO4 A 47
11BC2SOFTWAREASP A:537 , PRO A:634 , SER A:635 , GLU A:636 , ARG A:654 , HOH A:1027BINDING SITE FOR RESIDUE SO4 A 48
12BC3SOFTWARESO4 A:50 , ARG A:657 , ALA A:658BINDING SITE FOR RESIDUE SO4 A 49
13BC4SOFTWARESO4 A:49 , ARG A:657 , THR A:659 , ASN A:661BINDING SITE FOR RESIDUE SO4 A 50
14BC5SOFTWARECYS B:1287 , CYS B:1290 , CYS B:1314 , CYS B:1317BINDING SITE FOR RESIDUE ZN B 1
15BC6SOFTWARECYS B:1348 , CYS B:1353 , CYS B:1367 , CYS B:1372BINDING SITE FOR RESIDUE ZN B 2
16BC7SOFTWARESO4 B:38 , ASP B:1397 , CYS B:1398 , GLU B:1399 , ARG B:1435BINDING SITE FOR RESIDUE SO4 B 37
17BC8SOFTWARESO4 B:37 , ASP B:1397 , ARG B:1442BINDING SITE FOR RESIDUE SO4 B 38
18BC9SOFTWARETHR B:1423 , GLU B:1424BINDING SITE FOR RESIDUE SO4 B 57
19CC1SOFTWAREARG B:1306 , LYS B:1315BINDING SITE FOR RESIDUE SO4 B 59
20CC2SOFTWAREALA B:1336 , HIS B:1337BINDING SITE FOR RESIDUE SO4 B 62
21CC3SOFTWARETRP B:1345 , VAL B:1356 , LYS B:1379BINDING SITE FOR RESIDUE SO4 B 68
22CC4SOFTWAREARG C:559 , GLU C:562 , HIS C:563 , GLN C:566BINDING SITE FOR RESIDUE SO4 C 6
23CC5SOFTWAREHOH C:147 , ARG C:554 , TYR C:555 , ARG C:556BINDING SITE FOR RESIDUE SO4 C 8
24CC6SOFTWAREARG C:554BINDING SITE FOR RESIDUE SO4 C 9
25CC7SOFTWAREGLN C:645 , HOH C:724BINDING SITE FOR RESIDUE SO4 C 10
26CC8SOFTWAREARG C:505 , LYS C:506BINDING SITE FOR RESIDUE SO4 C 11
27CC9SOFTWAREHOH C:123 , LYS C:455 , THR C:456 , GLN C:457BINDING SITE FOR RESIDUE SO4 C 15
28DC1SOFTWARESER C:392 , THR C:669 , GLN C:671BINDING SITE FOR RESIDUE SO4 C 43
29DC2SOFTWARELYS C:455 , THR C:456BINDING SITE FOR RESIDUE SO4 C 46
30DC3SOFTWAREPRO C:634 , SER C:635 , ARG C:654 , HOH C:706BINDING SITE FOR RESIDUE SO4 C 52
31DC4SOFTWAREARG C:657 , ALA C:658 , THR C:659BINDING SITE FOR RESIDUE SO4 C 53
32DC5SOFTWARESER C:290 , GLN C:291 , SER C:292BINDING SITE FOR RESIDUE SO4 C 69
33DC6SOFTWARECYS D:1287 , CYS D:1290 , CYS D:1314 , CYS D:1317BINDING SITE FOR RESIDUE ZN D 1
34DC7SOFTWARECYS D:1348 , CYS D:1353 , CYS D:1367 , CYS D:1372BINDING SITE FOR RESIDUE ZN D 2
35DC8SOFTWAREARG D:1306 , LYS D:1315BINDING SITE FOR RESIDUE SO4 D 39
36DC9SOFTWAREASP D:1397 , CYS D:1398 , GLU D:1399 , ARG D:1435BINDING SITE FOR RESIDUE SO4 D 40
37EC1SOFTWAREHIS D:1337BINDING SITE FOR RESIDUE SO4 D 63
38EC2SOFTWAREHOH D:1194 , TRP D:1345 , VAL D:1356 , LYS D:1379BINDING SITE FOR RESIDUE SO4 D 67
39EC3SOFTWARESER E:341 , GLU E:562 , HIS E:563 , GLN E:566BINDING SITE FOR RESIDUE SO4 E 4
40EC4SOFTWAREPRO E:449 , ASN E:450BINDING SITE FOR RESIDUE SO4 E 20
41EC5SOFTWAREGLY E:400 , PRO E:634 , SER E:635 , GLU E:636 , ARG E:654BINDING SITE FOR RESIDUE SO4 E 22
42EC6SOFTWARETHR E:456 , GLN E:457 , HOH E:710 , HOH E:717BINDING SITE FOR RESIDUE SO4 E 23
43EC7SOFTWARELYS E:455 , THR E:456 , LYS E:467BINDING SITE FOR RESIDUE SO4 E 24
44EC8SOFTWAREARG E:505 , LYS E:512 , HOH E:1092 , HOH E:1093BINDING SITE FOR RESIDUE SO4 E 25
45EC9SOFTWAREARG E:505 , LYS E:506 , LYS E:512BINDING SITE FOR RESIDUE SO4 E 26
46FC1SOFTWAREALA E:501 , SER E:502BINDING SITE FOR RESIDUE SO4 E 33
47FC2SOFTWAREARG E:662BINDING SITE FOR RESIDUE SO4 E 44
48FC3SOFTWAREARG E:554 , TYR E:555 , ARG E:556BINDING SITE FOR RESIDUE SO4 E 45
49FC4SOFTWAREARG E:657 , ALA E:658BINDING SITE FOR RESIDUE SO4 E 54
50FC5SOFTWAREHOH E:240 , ARG E:554BINDING SITE FOR RESIDUE SO4 E 58
51FC6SOFTWARECYS F:1287 , CYS F:1290 , CYS F:1314 , CYS F:1317BINDING SITE FOR RESIDUE ZN F 1
52FC7SOFTWARECYS F:1348 , CYS F:1353 , CYS F:1367 , CYS F:1372BINDING SITE FOR RESIDUE ZN F 2
53FC8SOFTWAREASP F:1397 , CYS F:1398 , ARG F:1435 , ARG F:1442BINDING SITE FOR RESIDUE SO4 F 28
54FC9SOFTWAREARG F:1306 , LYS F:1315 , GLU F:1420BINDING SITE FOR RESIDUE SO4 F 41
55GC1SOFTWAREALA F:1336 , HIS F:1337 , LEU F:1340BINDING SITE FOR RESIDUE SO4 F 64
56GC2SOFTWARETRP F:1345 , VAL F:1356 , LYS F:1379BINDING SITE FOR RESIDUE SO4 F 66
57GC3SOFTWAREARG G:559 , GLU G:562 , HIS G:563 , GLN G:566BINDING SITE FOR RESIDUE SO4 G 1
58GC4SOFTWAREHOH G:20 , ARG G:554 , ASP G:558BINDING SITE FOR RESIDUE SO4 G 2
59GC5SOFTWAREHOH G:23 , ARG G:554 , TYR G:555 , ARG G:556BINDING SITE FOR RESIDUE SO4 G 7
60GC6SOFTWAREARG G:505 , HOH G:889BINDING SITE FOR RESIDUE SO4 G 16
61GC7SOFTWARELYS G:455 , THR G:456BINDING SITE FOR RESIDUE SO4 G 17
62GC8SOFTWAREARG G:505 , LYS G:506 , HOH G:822BINDING SITE FOR RESIDUE SO4 G 18
63GC9SOFTWAREHOH G:77 , THR G:456 , GLN G:457BINDING SITE FOR RESIDUE SO4 G 27
64HC1SOFTWARESER G:290 , GLN G:291 , SER G:292BINDING SITE FOR RESIDUE SO4 G 42
65HC2SOFTWAREPRO G:634 , SER G:635 , GLU G:636 , ARG G:654 , HOH G:840BINDING SITE FOR RESIDUE SO4 G 51
66HC3SOFTWARESO4 G:56 , ARG G:657 , ALA G:658 , THR G:659BINDING SITE FOR RESIDUE SO4 G 55
67HC4SOFTWARESO4 G:55 , ARG G:657 , THR G:659 , ASN G:661BINDING SITE FOR RESIDUE SO4 G 56
68HC5SOFTWARECYS H:1287 , CYS H:1290 , CYS H:1314 , CYS H:1317BINDING SITE FOR RESIDUE ZN H 1
69HC6SOFTWARECYS H:1348 , CYS H:1353 , CYS H:1367 , CYS H:1372BINDING SITE FOR RESIDUE ZN H 2
70HC7SOFTWAREASP H:1397 , CYS H:1398 , GLU H:1399 , ARG H:1435 , ARG H:1442BINDING SITE FOR RESIDUE SO4 H 19
71HC8SOFTWARELYS G:277 , ARG H:1306 , LYS H:1315BINDING SITE FOR RESIDUE SO4 H 60
72HC9SOFTWAREALA H:1336 , HIS H:1337BINDING SITE FOR RESIDUE SO4 H 61
73IC1SOFTWARETRP H:1345 , LYS H:1379BINDING SITE FOR RESIDUE SO4 H 65

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FLO)

(-) Cis Peptide Bonds  (20, 20)

Asymmetric Unit
No.Residues
1Gly A:400 -Pro A:401
2Gly A:433 -Pro A:434
3Tyr A:498 -Pro A:499
4Asn A:520 -Pro A:521
5Phe A:574 -Pro A:575
6Gly C:400 -Pro C:401
7Gly C:433 -Pro C:434
8Tyr C:498 -Pro C:499
9Asn C:520 -Pro C:521
10Phe C:574 -Pro C:575
11Gly E:400 -Pro E:401
12Gly E:433 -Pro E:434
13Tyr E:498 -Pro E:499
14Asn E:520 -Pro E:521
15Phe E:574 -Pro E:575
16Gly G:400 -Pro G:401
17Gly G:433 -Pro G:434
18Tyr G:498 -Pro G:499
19Asn G:520 -Pro G:521
20Phe G:574 -Pro G:575

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FLO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FLO)

(-) Exons   (0, 0)

(no "Exon" information available for 3FLO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:433
 aligned with DPOA2_YEAST | P38121 from UniProtKB/Swiss-Prot  Length:705

    Alignment length:458
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697        
         DPOA2_YEAST    248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS  705
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..........eeeeeeeee.............eeee.hhhhhh..eeeee......eee....eeeeeee......eeeeee.........eeehhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhh....eeeee.......hhhhhhh.............hhhhhhhhhhhhhhh......eeeee.............................eee....eeeee..eeeee...hhhhhh..eeehhhhhhhhhhhhhhhhhhhhh.........ee.-------------------------..ee...hhhhhhhhhhhhhh...eee.......eeeee..eeeee............eeeeeee..........eee.....eee.hhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3flo A  248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRT-------------------------HISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS  705
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577  |      -         -       607       617       627       637       647       657       667       677       687       697        
                                                                                                                                                                                                                                                                                                                                                                      580                       606                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:180
 aligned with DPOA_YEAST | P13382 from UniProtKB/Swiss-Prot  Length:1468

    Alignment length:180
                                  1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452
          DPOA_YEAST   1273 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC 1452
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeee......eeee........eeee..eeee.......hhhhhhhhhhhhhhhhhhhhhhh.eee.......ee..................eee..hhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3flo B 1273 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC 1452
                                  1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452


Chain C from PDB  Type:PROTEIN  Length:433
 aligned with DPOA2_YEAST | P38121 from UniProtKB/Swiss-Prot  Length:705

    Alignment length:458
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697        
         DPOA2_YEAST    248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS  705
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..........eeeeeeeee.............eeee.hhhhhh..eeeee......eee....eeeeeee......eeeeee.........eeehhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhh....eeeee.......hhhhhhh.............hhhhhhhhhhhhhhh......eeeee.............................eee....eeeee..eeeee...hhhhhh..eeehhhhhhhhhhhhhhhhhhhhh.........ee.-------------------------..ee...hhhhhhhhhhhhhh...eee.......eeeee..eeeee............eeeeeee..........eee.....eee.hhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3flo C  248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRT-------------------------HISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS  705
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577  |      -         -       607       617       627       637       647       657       667       677       687       697        
                                                                                                                                                                                                                                                                                                                                                                      580                       606                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:180
 aligned with DPOA_YEAST | P13382 from UniProtKB/Swiss-Prot  Length:1468

    Alignment length:180
                                  1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452
          DPOA_YEAST   1273 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC 1452
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eee......eee.........eeee..eeee.......hhhhhhhhhhhhhhhhhhhhhh..eee.......ee..................eee..hhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3flo D 1273 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC 1452
                                  1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452


Chain E from PDB  Type:PROTEIN  Length:433
 aligned with DPOA2_YEAST | P38121 from UniProtKB/Swiss-Prot  Length:705

    Alignment length:458
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697        
         DPOA2_YEAST    248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS  705
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..........eeeeeeeee.............eeee.hhhhhh..eeeee......eee....eeeeeee......eeeeee.........eeehhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhh....eeeee.......hhhhhhh.............hhhhhhhhhhhhhhh......eeeee.............................eee....eeeee..eeeee...hhhhhh..eeehhhhhhhhhhhhhhhhhhhhh.........ee.-------------------------..ee...hhhhhhhhhhhhhh...eee.......eeeee..eeeee............eeeeeee..........eee.....eee.hhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3flo E  248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRT-------------------------HISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS  705
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577  |      -         -       607       617       627       637       647       657       667       677       687       697        
                                                                                                                                                                                                                                                                                                                                                                      580                       606                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:180
 aligned with DPOA_YEAST | P13382 from UniProtKB/Swiss-Prot  Length:1468

    Alignment length:180
                                  1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452
          DPOA_YEAST   1273 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC 1452
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeee......eeee........eeee..eeee.......hhhhhhhhhhhhhhhhhhhhhhh.eee.......ee..................eee..hhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3flo F 1273 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC 1452
                                  1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452


Chain G from PDB  Type:PROTEIN  Length:433
 aligned with DPOA2_YEAST | P38121 from UniProtKB/Swiss-Prot  Length:705

    Alignment length:458
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697        
         DPOA2_YEAST    248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS  705
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..........eeeeeeeee.............eeee.hhhhhh..eeeee......eee....eeeeeee......eeeeee.........eehhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhh....eeeee.......hhhhhhh.............hhhhhhhhhhhhhhh......eeeee..................hhhhhh.....eee....eeeee..eeeee...hhhhhh..eeehhhhhhhhhhhhhhhhhhhhh.........ee.-------------------------..ee...hhhhhhhhhhhhhh...eee.......eeeee..eeeee............eeeeeee..........eee.....eee.hhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3flo G  248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRT-------------------------HISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS  705
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577  |      -         -       607       617       627       637       647       657       667       677       687       697        
                                                                                                                                                                                                                                                                                                                                                                      580                       606                                                                                                   


Chain H from PDB  Type:PROTEIN  Length:180
 aligned with DPOA_YEAST | P13382 from UniProtKB/Swiss-Prot  Length:1468

    Alignment length:180
                                  1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452
          DPOA_YEAST   1273 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC 1452
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh.....eee......eee.........eeee..eeee.......hhhhhhhhhhhhhhhhhhhhhhh.eee.......ee..................eee..hhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3flo H 1273 DVERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKNKKQELKPIYLPDDLDYPKEQLTESSIKALTEQNRELMETGRSVVQKYLNDC 1452
                                  1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452


Chain I from PDB  Type:PROTEIN  Length:3
                                    
               SCOP domains --- SCOP domains
               CATH domains --- CATH domains
               Pfam domains --- Pfam domains
         Sec.struct. author ... Sec.struct. author
                 SAPs(SNPs) --- SAPs(SNPs)
                    PROSITE --- PROSITE
                 Transcript --- Transcript
                3flo I 1000 xxx 1002
                            |||
                         1000-UNK
                          1001-UNK
                           1002-UNK


Chain J from PDB  Type:PROTEIN  Length:3
                                    
               SCOP domains --- SCOP domains
               CATH domains --- CATH domains
               Pfam domains --- Pfam domains
         Sec.struct. author ... Sec.struct. author
                 SAPs(SNPs) --- SAPs(SNPs)
                    PROSITE --- PROSITE
                 Transcript --- Transcript
                3flo J 1000 xxx 1002
                            |||
                            |||
                         1000-UNK
                          1001-UNK
                           1002-UNK


Chain K from PDB  Type:PROTEIN  Length:3
                                    
               SCOP domains --- SCOP domains
               CATH domains --- CATH domains
               Pfam domains --- Pfam domains
         Sec.struct. author .ee Sec.struct. author
                 SAPs(SNPs) --- SAPs(SNPs)
                    PROSITE --- PROSITE
                 Transcript --- Transcript
                3flo K 1000 xxx 1002
                            |||
                            |||
                         1000-UNK
                          1001-UNK
                           1002-UNK


Chain L from PDB  Type:PROTEIN  Length:3
                                    
               SCOP domains --- SCOP domains
               CATH domains --- CATH domains
               Pfam domains --- Pfam domains
         Sec.struct. author ... Sec.struct. author
                 SAPs(SNPs) --- SAPs(SNPs)
                    PROSITE --- PROSITE
                 Transcript --- Transcript
                3flo L 1000 xxx 1002
                            |||
                            |||
                         1000-UNK
                          1001-UNK
                           1002-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FLO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FLO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FLO)

(-) Gene Ontology  (29, 37)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (DPOA2_YEAST | P38121)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003887    DNA-directed DNA polymerase activity    Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
    GO:0071897    DNA biosynthetic process    The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006270    DNA replication initiation    The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action.
    GO:0006273    lagging strand elongation    The synthesis of DNA from a template strand in a net 3' to 5' direction. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork.
    GO:0016233    telomere capping    A process in which telomeres are protected from degradation and fusion, thereby ensuring chromosome stability by protecting the ends from both degradation and from being recognized as damaged DNA. May be mediated by specific single- or double-stranded telomeric DNA binding proteins.
cellular component
    GO:0005658    alpha DNA polymerase:primase complex    A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis.
    GO:0005635    nuclear envelope    The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,D,F,H   (DPOA_YEAST | P13382)
molecular function
    GO:0008408    3'-5' exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003887    DNA-directed DNA polymerase activity    Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0001882    nucleoside binding    Interacting selectively and non-covalently with a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006270    DNA replication initiation    The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action.
    GO:0000731    DNA synthesis involved in DNA repair    Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
    GO:0006278    RNA-dependent DNA biosynthetic process    A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand.
    GO:0006302    double-strand break repair    The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
    GO:0006303    double-strand break repair via nonhomologous end joining    The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
    GO:0006273    lagging strand elongation    The synthesis of DNA from a template strand in a net 3' to 5' direction. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork.
    GO:0006272    leading strand elongation    The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
    GO:0006279    premeiotic DNA replication    The replication of DNA that precedes meiotic cell division.
cellular component
    GO:0005658    alpha DNA polymerase:primase complex    A complex of four polypeptides, comprising large and small DNA polymerase alpha subunits and two primase subunits, which catalyzes the synthesis of an RNA primer on the lagging strand of replicating DNA; the smaller of the two primase subunits alone can catalyze oligoribonucleotide synthesis.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005657    replication fork    The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.

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  DPOA_YEAST | P13382
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 Related Entries

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        DPOA_YEAST | P13382: 3oiq 4b08 4c93 4fvm 4fxd 4fyd

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