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3FLO
Biol. Unit 2
Info
Asym.Unit (874 KB)
Biol.Unit 1 (221 KB)
Biol.Unit 2 (222 KB)
Biol.Unit 3 (223 KB)
Biol.Unit 4 (221 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CARBOXYL-TERMINAL DOMAIN OF YEAST DNA POLYMERASE ALPHA IN COMPLEX WITH ITS B SUBUNIT
Authors
:
S. N. Klinge, L. Pellegrini
Date
:
19 Dec 08 (Deposition) - 09 Jun 09 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,K (1x)
Biol. Unit 2: C,D,L (1x)
Biol. Unit 3: E,F,I (1x)
Biol. Unit 4: G,H,J (1x)
Keywords
:
Protein-Protein Complex, Phosphoesterase Fold, Ob Fold, Zinc-Binding Motif, Dna Replication, Nucleus, Phosphoprotein, Dna-Binding, Dna- Directed Dna Polymerase, Nucleotidyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Klinge, R. Nunez-Ramirez, O. Llorca, L. Pellegrini
3D Architecture Of Dna Pol Alpha Reveals The Functional Cor Of Multi-Subunit Replicative Polymerases
Embo J. V. 28 1978 2009
[
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Hetero Components
(1, 15)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1aa: SULFATE ION (SO4aa)
1ab: SULFATE ION (SO4ab)
1ac: SULFATE ION (SO4ac)
1ad: SULFATE ION (SO4ad)
1ae: SULFATE ION (SO4ae)
1af: SULFATE ION (SO4af)
1ag: SULFATE ION (SO4ag)
1ah: SULFATE ION (SO4ah)
1ai: SULFATE ION (SO4ai)
1aj: SULFATE ION (SO4aj)
1ak: SULFATE ION (SO4ak)
1al: SULFATE ION (SO4al)
1am: SULFATE ION (SO4am)
1an: SULFATE ION (SO4an)
1ao: SULFATE ION (SO4ao)
1ap: SULFATE ION (SO4ap)
1aq: SULFATE ION (SO4aq)
1ar: SULFATE ION (SO4ar)
1as: SULFATE ION (SO4as)
1at: SULFATE ION (SO4at)
1au: SULFATE ION (SO4au)
1av: SULFATE ION (SO4av)
1aw: SULFATE ION (SO4aw)
1ax: SULFATE ION (SO4ax)
1ay: SULFATE ION (SO4ay)
1az: SULFATE ION (SO4az)
1b: SULFATE ION (SO4b)
1ba: SULFATE ION (SO4ba)
1bb: SULFATE ION (SO4bb)
1bc: SULFATE ION (SO4bc)
1bd: SULFATE ION (SO4bd)
1be: SULFATE ION (SO4be)
1bf: SULFATE ION (SO4bf)
1bg: SULFATE ION (SO4bg)
1bh: SULFATE ION (SO4bh)
1bi: SULFATE ION (SO4bi)
1bj: SULFATE ION (SO4bj)
1bk: SULFATE ION (SO4bk)
1bl: SULFATE ION (SO4bl)
1bm: SULFATE ION (SO4bm)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
1y: SULFATE ION (SO4y)
1z: SULFATE ION (SO4z)
2a: (UNKa)
2b: (UNKb)
2c: (UNKc)
2d: (UNKd)
2e: (UNKe)
2f: (UNKf)
2g: (UNKg)
2h: (UNKh)
2i: (UNKi)
2j: (UNKj)
2k: (UNKk)
2l: (UNKl)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
15
Ligand/Ion
SULFATE ION
2
UNK
-1
Mod. Amino Acid
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: CC4 (SOFTWARE)
02: CC5 (SOFTWARE)
03: CC6 (SOFTWARE)
04: CC7 (SOFTWARE)
05: CC8 (SOFTWARE)
06: CC9 (SOFTWARE)
07: DC1 (SOFTWARE)
08: DC2 (SOFTWARE)
09: DC3 (SOFTWARE)
10: DC4 (SOFTWARE)
11: DC5 (SOFTWARE)
12: DC6 (SOFTWARE)
13: DC7 (SOFTWARE)
14: DC8 (SOFTWARE)
15: DC9 (SOFTWARE)
16: EC1 (SOFTWARE)
17: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC4
SOFTWARE
ARG C:559 , GLU C:562 , HIS C:563 , GLN C:566
BINDING SITE FOR RESIDUE SO4 C 6
02
CC5
SOFTWARE
HOH C:147 , ARG C:554 , TYR C:555 , ARG C:556
BINDING SITE FOR RESIDUE SO4 C 8
03
CC6
SOFTWARE
ARG C:554
BINDING SITE FOR RESIDUE SO4 C 9
04
CC7
SOFTWARE
GLN C:645 , HOH C:724
BINDING SITE FOR RESIDUE SO4 C 10
05
CC8
SOFTWARE
ARG C:505 , LYS C:506
BINDING SITE FOR RESIDUE SO4 C 11
06
CC9
SOFTWARE
HOH C:123 , LYS C:455 , THR C:456 , GLN C:457
BINDING SITE FOR RESIDUE SO4 C 15
07
DC1
SOFTWARE
SER C:392 , THR C:669 , GLN C:671
BINDING SITE FOR RESIDUE SO4 C 43
08
DC2
SOFTWARE
LYS C:455 , THR C:456
BINDING SITE FOR RESIDUE SO4 C 46
09
DC3
SOFTWARE
PRO C:634 , SER C:635 , ARG C:654 , HOH C:706
BINDING SITE FOR RESIDUE SO4 C 52
10
DC4
SOFTWARE
ARG C:657 , ALA C:658 , THR C:659
BINDING SITE FOR RESIDUE SO4 C 53
11
DC5
SOFTWARE
SER C:290 , GLN C:291 , SER C:292
BINDING SITE FOR RESIDUE SO4 C 69
12
DC6
SOFTWARE
CYS D:1287 , CYS D:1290 , CYS D:1314 , CYS D:1317
BINDING SITE FOR RESIDUE ZN D 1
13
DC7
SOFTWARE
CYS D:1348 , CYS D:1353 , CYS D:1367 , CYS D:1372
BINDING SITE FOR RESIDUE ZN D 2
14
DC8
SOFTWARE
ARG D:1306 , LYS D:1315
BINDING SITE FOR RESIDUE SO4 D 39
15
DC9
SOFTWARE
ASP D:1397 , CYS D:1398 , GLU D:1399 , ARG D:1435
BINDING SITE FOR RESIDUE SO4 D 40
16
EC1
SOFTWARE
HIS D:1337
BINDING SITE FOR RESIDUE SO4 D 63
17
EC2
SOFTWARE
HOH D:1194 , TRP D:1345 , VAL D:1356 , LYS D:1379
BINDING SITE FOR RESIDUE SO4 D 67
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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End label:
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (874 KB)
Header - Asym.Unit
Biol.Unit 1 (221 KB)
Header - Biol.Unit 1
Biol.Unit 2 (222 KB)
Header - Biol.Unit 2
Biol.Unit 3 (223 KB)
Header - Biol.Unit 3
Biol.Unit 4 (221 KB)
Header - Biol.Unit 4
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