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3FLO
Biol. Unit 3
Info
Asym.Unit (874 KB)
Biol.Unit 1 (221 KB)
Biol.Unit 2 (222 KB)
Biol.Unit 3 (223 KB)
Biol.Unit 4 (221 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CARBOXYL-TERMINAL DOMAIN OF YEAST DNA POLYMERASE ALPHA IN COMPLEX WITH ITS B SUBUNIT
Authors
:
S. N. Klinge, L. Pellegrini
Date
:
19 Dec 08 (Deposition) - 09 Jun 09 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,K (1x)
Biol. Unit 2: C,D,L (1x)
Biol. Unit 3: E,F,I (1x)
Biol. Unit 4: G,H,J (1x)
Keywords
:
Protein-Protein Complex, Phosphoesterase Fold, Ob Fold, Zinc-Binding Motif, Dna Replication, Nucleus, Phosphoprotein, Dna-Binding, Dna- Directed Dna Polymerase, Nucleotidyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Klinge, R. Nunez-Ramirez, O. Llorca, L. Pellegrini
3D Architecture Of Dna Pol Alpha Reveals The Functional Cor Of Multi-Subunit Replicative Polymerases
Embo J. V. 28 1978 2009
[
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Hetero Components
(1, 16)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1aa: SULFATE ION (SO4aa)
1ab: SULFATE ION (SO4ab)
1ac: SULFATE ION (SO4ac)
1ad: SULFATE ION (SO4ad)
1ae: SULFATE ION (SO4ae)
1af: SULFATE ION (SO4af)
1ag: SULFATE ION (SO4ag)
1ah: SULFATE ION (SO4ah)
1ai: SULFATE ION (SO4ai)
1aj: SULFATE ION (SO4aj)
1ak: SULFATE ION (SO4ak)
1al: SULFATE ION (SO4al)
1am: SULFATE ION (SO4am)
1an: SULFATE ION (SO4an)
1ao: SULFATE ION (SO4ao)
1ap: SULFATE ION (SO4ap)
1aq: SULFATE ION (SO4aq)
1ar: SULFATE ION (SO4ar)
1as: SULFATE ION (SO4as)
1at: SULFATE ION (SO4at)
1au: SULFATE ION (SO4au)
1av: SULFATE ION (SO4av)
1aw: SULFATE ION (SO4aw)
1ax: SULFATE ION (SO4ax)
1ay: SULFATE ION (SO4ay)
1az: SULFATE ION (SO4az)
1b: SULFATE ION (SO4b)
1ba: SULFATE ION (SO4ba)
1bb: SULFATE ION (SO4bb)
1bc: SULFATE ION (SO4bc)
1bd: SULFATE ION (SO4bd)
1be: SULFATE ION (SO4be)
1bf: SULFATE ION (SO4bf)
1bg: SULFATE ION (SO4bg)
1bh: SULFATE ION (SO4bh)
1bi: SULFATE ION (SO4bi)
1bj: SULFATE ION (SO4bj)
1bk: SULFATE ION (SO4bk)
1bl: SULFATE ION (SO4bl)
1bm: SULFATE ION (SO4bm)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
1y: SULFATE ION (SO4y)
1z: SULFATE ION (SO4z)
2a: (UNKa)
2b: (UNKb)
2c: (UNKc)
2d: (UNKd)
2e: (UNKe)
2f: (UNKf)
2g: (UNKg)
2h: (UNKh)
2i: (UNKi)
2j: (UNKj)
2k: (UNKk)
2l: (UNKl)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
16
Ligand/Ion
SULFATE ION
2
UNK
-1
Mod. Amino Acid
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: EC3 (SOFTWARE)
02: EC4 (SOFTWARE)
03: EC5 (SOFTWARE)
04: EC6 (SOFTWARE)
05: EC7 (SOFTWARE)
06: EC8 (SOFTWARE)
07: EC9 (SOFTWARE)
08: FC1 (SOFTWARE)
09: FC2 (SOFTWARE)
10: FC3 (SOFTWARE)
11: FC4 (SOFTWARE)
12: FC5 (SOFTWARE)
13: FC6 (SOFTWARE)
14: FC7 (SOFTWARE)
15: FC8 (SOFTWARE)
16: FC9 (SOFTWARE)
17: GC1 (SOFTWARE)
18: GC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
EC3
SOFTWARE
SER E:341 , GLU E:562 , HIS E:563 , GLN E:566
BINDING SITE FOR RESIDUE SO4 E 4
02
EC4
SOFTWARE
PRO E:449 , ASN E:450
BINDING SITE FOR RESIDUE SO4 E 20
03
EC5
SOFTWARE
GLY E:400 , PRO E:634 , SER E:635 , GLU E:636 , ARG E:654
BINDING SITE FOR RESIDUE SO4 E 22
04
EC6
SOFTWARE
THR E:456 , GLN E:457 , HOH E:710 , HOH E:717
BINDING SITE FOR RESIDUE SO4 E 23
05
EC7
SOFTWARE
LYS E:455 , THR E:456 , LYS E:467
BINDING SITE FOR RESIDUE SO4 E 24
06
EC8
SOFTWARE
ARG E:505 , LYS E:512 , HOH E:1092 , HOH E:1093
BINDING SITE FOR RESIDUE SO4 E 25
07
EC9
SOFTWARE
ARG E:505 , LYS E:506 , LYS E:512
BINDING SITE FOR RESIDUE SO4 E 26
08
FC1
SOFTWARE
ALA E:501 , SER E:502
BINDING SITE FOR RESIDUE SO4 E 33
09
FC2
SOFTWARE
ARG E:662
BINDING SITE FOR RESIDUE SO4 E 44
10
FC3
SOFTWARE
ARG E:554 , TYR E:555 , ARG E:556
BINDING SITE FOR RESIDUE SO4 E 45
11
FC4
SOFTWARE
ARG E:657 , ALA E:658
BINDING SITE FOR RESIDUE SO4 E 54
12
FC5
SOFTWARE
HOH E:240 , ARG E:554
BINDING SITE FOR RESIDUE SO4 E 58
13
FC6
SOFTWARE
CYS F:1287 , CYS F:1290 , CYS F:1314 , CYS F:1317
BINDING SITE FOR RESIDUE ZN F 1
14
FC7
SOFTWARE
CYS F:1348 , CYS F:1353 , CYS F:1367 , CYS F:1372
BINDING SITE FOR RESIDUE ZN F 2
15
FC8
SOFTWARE
ASP F:1397 , CYS F:1398 , ARG F:1435 , ARG F:1442
BINDING SITE FOR RESIDUE SO4 F 28
16
FC9
SOFTWARE
ARG F:1306 , LYS F:1315 , GLU F:1420
BINDING SITE FOR RESIDUE SO4 F 41
17
GC1
SOFTWARE
ALA F:1336 , HIS F:1337 , LEU F:1340
BINDING SITE FOR RESIDUE SO4 F 64
18
GC2
SOFTWARE
TRP F:1345 , VAL F:1356 , LYS F:1379
BINDING SITE FOR RESIDUE SO4 F 66
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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;
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End label:
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (874 KB)
Header - Asym.Unit
Biol.Unit 1 (221 KB)
Header - Biol.Unit 1
Biol.Unit 2 (222 KB)
Header - Biol.Unit 2
Biol.Unit 3 (223 KB)
Header - Biol.Unit 3
Biol.Unit 4 (221 KB)
Header - Biol.Unit 4
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