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3FLO
Asym. Unit
Info
Asym.Unit (874 KB)
Biol.Unit 1 (221 KB)
Biol.Unit 2 (222 KB)
Biol.Unit 3 (223 KB)
Biol.Unit 4 (221 KB)
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Title
:
CRYSTAL STRUCTURE OF THE CARBOXYL-TERMINAL DOMAIN OF YEAST DNA POLYMERASE ALPHA IN COMPLEX WITH ITS B SUBUNIT
Authors
:
S. N. Klinge, L. Pellegrini
Date
:
19 Dec 08 (Deposition) - 09 Jun 09 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,K (1x)
Biol. Unit 2: C,D,L (1x)
Biol. Unit 3: E,F,I (1x)
Biol. Unit 4: G,H,J (1x)
Keywords
:
Protein-Protein Complex, Phosphoesterase Fold, Ob Fold, Zinc-Binding Motif, Dna Replication, Nucleus, Phosphoprotein, Dna-Binding, Dna- Directed Dna Polymerase, Nucleotidyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Klinge, R. Nunez-Ramirez, O. Llorca, L. Pellegrini
3D Architecture Of Dna Pol Alpha Reveals The Functional Cor Of Multi-Subunit Replicative Polymerases
Embo J. V. 28 1978 2009
[
close entry info
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Hetero Components
(3, 85)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1aa: SULFATE ION (SO4aa)
1ab: SULFATE ION (SO4ab)
1ac: SULFATE ION (SO4ac)
1ad: SULFATE ION (SO4ad)
1ae: SULFATE ION (SO4ae)
1af: SULFATE ION (SO4af)
1ag: SULFATE ION (SO4ag)
1ah: SULFATE ION (SO4ah)
1ai: SULFATE ION (SO4ai)
1aj: SULFATE ION (SO4aj)
1ak: SULFATE ION (SO4ak)
1al: SULFATE ION (SO4al)
1am: SULFATE ION (SO4am)
1an: SULFATE ION (SO4an)
1ao: SULFATE ION (SO4ao)
1ap: SULFATE ION (SO4ap)
1aq: SULFATE ION (SO4aq)
1ar: SULFATE ION (SO4ar)
1as: SULFATE ION (SO4as)
1at: SULFATE ION (SO4at)
1au: SULFATE ION (SO4au)
1av: SULFATE ION (SO4av)
1aw: SULFATE ION (SO4aw)
1ax: SULFATE ION (SO4ax)
1ay: SULFATE ION (SO4ay)
1az: SULFATE ION (SO4az)
1b: SULFATE ION (SO4b)
1ba: SULFATE ION (SO4ba)
1bb: SULFATE ION (SO4bb)
1bc: SULFATE ION (SO4bc)
1bd: SULFATE ION (SO4bd)
1be: SULFATE ION (SO4be)
1bf: SULFATE ION (SO4bf)
1bg: SULFATE ION (SO4bg)
1bh: SULFATE ION (SO4bh)
1bi: SULFATE ION (SO4bi)
1bj: SULFATE ION (SO4bj)
1bk: SULFATE ION (SO4bk)
1bl: SULFATE ION (SO4bl)
1bm: SULFATE ION (SO4bm)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
1y: SULFATE ION (SO4y)
1z: SULFATE ION (SO4z)
2a: (UNKa)
2b: (UNKb)
2c: (UNKc)
2d: (UNKd)
2e: (UNKe)
2f: (UNKf)
2g: (UNKg)
2h: (UNKh)
2i: (UNKi)
2j: (UNKj)
2k: (UNKk)
2l: (UNKl)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
65
Ligand/Ion
SULFATE ION
2
UNK
12
Mod. Amino Acid
3
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(73, 73)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:559 , GLU A:562 , HIS A:563 , GLN A:566
BINDING SITE FOR RESIDUE SO4 A 3
02
AC2
SOFTWARE
ARG A:554 , TYR A:555 , ARG A:556
BINDING SITE FOR RESIDUE SO4 A 5
03
AC3
SOFTWARE
HOH A:133 , ARG A:505 , LYS A:512
BINDING SITE FOR RESIDUE SO4 A 12
04
AC4
SOFTWARE
ARG A:505 , LYS A:506
BINDING SITE FOR RESIDUE SO4 A 13
05
AC5
SOFTWARE
LYS A:455 , THR A:456 , GLN A:457 , HOH A:717
BINDING SITE FOR RESIDUE SO4 A 30
06
AC6
SOFTWARE
LYS A:455 , THR A:456 , LYS A:467 , HOH A:760
BINDING SITE FOR RESIDUE SO4 A 31
07
AC7
SOFTWARE
ALA A:501 , SER A:502
BINDING SITE FOR RESIDUE SO4 A 32
08
AC8
SOFTWARE
GLU A:293 , LYS A:353
BINDING SITE FOR RESIDUE SO4 A 34
09
AC9
SOFTWARE
ILE A:271 , PRO A:369 , TYR A:370 , ARG A:568
BINDING SITE FOR RESIDUE SO4 A 35
10
BC1
SOFTWARE
SER A:290 , GLN A:291 , SER A:292
BINDING SITE FOR RESIDUE SO4 A 47
11
BC2
SOFTWARE
ASP A:537 , PRO A:634 , SER A:635 , GLU A:636 , ARG A:654 , HOH A:1027
BINDING SITE FOR RESIDUE SO4 A 48
12
BC3
SOFTWARE
SO4 A:50 , ARG A:657 , ALA A:658
BINDING SITE FOR RESIDUE SO4 A 49
13
BC4
SOFTWARE
SO4 A:49 , ARG A:657 , THR A:659 , ASN A:661
BINDING SITE FOR RESIDUE SO4 A 50
14
BC5
SOFTWARE
CYS B:1287 , CYS B:1290 , CYS B:1314 , CYS B:1317
BINDING SITE FOR RESIDUE ZN B 1
15
BC6
SOFTWARE
CYS B:1348 , CYS B:1353 , CYS B:1367 , CYS B:1372
BINDING SITE FOR RESIDUE ZN B 2
16
BC7
SOFTWARE
SO4 B:38 , ASP B:1397 , CYS B:1398 , GLU B:1399 , ARG B:1435
BINDING SITE FOR RESIDUE SO4 B 37
17
BC8
SOFTWARE
SO4 B:37 , ASP B:1397 , ARG B:1442
BINDING SITE FOR RESIDUE SO4 B 38
18
BC9
SOFTWARE
THR B:1423 , GLU B:1424
BINDING SITE FOR RESIDUE SO4 B 57
19
CC1
SOFTWARE
ARG B:1306 , LYS B:1315
BINDING SITE FOR RESIDUE SO4 B 59
20
CC2
SOFTWARE
ALA B:1336 , HIS B:1337
BINDING SITE FOR RESIDUE SO4 B 62
21
CC3
SOFTWARE
TRP B:1345 , VAL B:1356 , LYS B:1379
BINDING SITE FOR RESIDUE SO4 B 68
22
CC4
SOFTWARE
ARG C:559 , GLU C:562 , HIS C:563 , GLN C:566
BINDING SITE FOR RESIDUE SO4 C 6
23
CC5
SOFTWARE
HOH C:147 , ARG C:554 , TYR C:555 , ARG C:556
BINDING SITE FOR RESIDUE SO4 C 8
24
CC6
SOFTWARE
ARG C:554
BINDING SITE FOR RESIDUE SO4 C 9
25
CC7
SOFTWARE
GLN C:645 , HOH C:724
BINDING SITE FOR RESIDUE SO4 C 10
26
CC8
SOFTWARE
ARG C:505 , LYS C:506
BINDING SITE FOR RESIDUE SO4 C 11
27
CC9
SOFTWARE
HOH C:123 , LYS C:455 , THR C:456 , GLN C:457
BINDING SITE FOR RESIDUE SO4 C 15
28
DC1
SOFTWARE
SER C:392 , THR C:669 , GLN C:671
BINDING SITE FOR RESIDUE SO4 C 43
29
DC2
SOFTWARE
LYS C:455 , THR C:456
BINDING SITE FOR RESIDUE SO4 C 46
30
DC3
SOFTWARE
PRO C:634 , SER C:635 , ARG C:654 , HOH C:706
BINDING SITE FOR RESIDUE SO4 C 52
31
DC4
SOFTWARE
ARG C:657 , ALA C:658 , THR C:659
BINDING SITE FOR RESIDUE SO4 C 53
32
DC5
SOFTWARE
SER C:290 , GLN C:291 , SER C:292
BINDING SITE FOR RESIDUE SO4 C 69
33
DC6
SOFTWARE
CYS D:1287 , CYS D:1290 , CYS D:1314 , CYS D:1317
BINDING SITE FOR RESIDUE ZN D 1
34
DC7
SOFTWARE
CYS D:1348 , CYS D:1353 , CYS D:1367 , CYS D:1372
BINDING SITE FOR RESIDUE ZN D 2
35
DC8
SOFTWARE
ARG D:1306 , LYS D:1315
BINDING SITE FOR RESIDUE SO4 D 39
36
DC9
SOFTWARE
ASP D:1397 , CYS D:1398 , GLU D:1399 , ARG D:1435
BINDING SITE FOR RESIDUE SO4 D 40
37
EC1
SOFTWARE
HIS D:1337
BINDING SITE FOR RESIDUE SO4 D 63
38
EC2
SOFTWARE
HOH D:1194 , TRP D:1345 , VAL D:1356 , LYS D:1379
BINDING SITE FOR RESIDUE SO4 D 67
39
EC3
SOFTWARE
SER E:341 , GLU E:562 , HIS E:563 , GLN E:566
BINDING SITE FOR RESIDUE SO4 E 4
40
EC4
SOFTWARE
PRO E:449 , ASN E:450
BINDING SITE FOR RESIDUE SO4 E 20
41
EC5
SOFTWARE
GLY E:400 , PRO E:634 , SER E:635 , GLU E:636 , ARG E:654
BINDING SITE FOR RESIDUE SO4 E 22
42
EC6
SOFTWARE
THR E:456 , GLN E:457 , HOH E:710 , HOH E:717
BINDING SITE FOR RESIDUE SO4 E 23
43
EC7
SOFTWARE
LYS E:455 , THR E:456 , LYS E:467
BINDING SITE FOR RESIDUE SO4 E 24
44
EC8
SOFTWARE
ARG E:505 , LYS E:512 , HOH E:1092 , HOH E:1093
BINDING SITE FOR RESIDUE SO4 E 25
45
EC9
SOFTWARE
ARG E:505 , LYS E:506 , LYS E:512
BINDING SITE FOR RESIDUE SO4 E 26
46
FC1
SOFTWARE
ALA E:501 , SER E:502
BINDING SITE FOR RESIDUE SO4 E 33
47
FC2
SOFTWARE
ARG E:662
BINDING SITE FOR RESIDUE SO4 E 44
48
FC3
SOFTWARE
ARG E:554 , TYR E:555 , ARG E:556
BINDING SITE FOR RESIDUE SO4 E 45
49
FC4
SOFTWARE
ARG E:657 , ALA E:658
BINDING SITE FOR RESIDUE SO4 E 54
50
FC5
SOFTWARE
HOH E:240 , ARG E:554
BINDING SITE FOR RESIDUE SO4 E 58
51
FC6
SOFTWARE
CYS F:1287 , CYS F:1290 , CYS F:1314 , CYS F:1317
BINDING SITE FOR RESIDUE ZN F 1
52
FC7
SOFTWARE
CYS F:1348 , CYS F:1353 , CYS F:1367 , CYS F:1372
BINDING SITE FOR RESIDUE ZN F 2
53
FC8
SOFTWARE
ASP F:1397 , CYS F:1398 , ARG F:1435 , ARG F:1442
BINDING SITE FOR RESIDUE SO4 F 28
54
FC9
SOFTWARE
ARG F:1306 , LYS F:1315 , GLU F:1420
BINDING SITE FOR RESIDUE SO4 F 41
55
GC1
SOFTWARE
ALA F:1336 , HIS F:1337 , LEU F:1340
BINDING SITE FOR RESIDUE SO4 F 64
56
GC2
SOFTWARE
TRP F:1345 , VAL F:1356 , LYS F:1379
BINDING SITE FOR RESIDUE SO4 F 66
57
GC3
SOFTWARE
ARG G:559 , GLU G:562 , HIS G:563 , GLN G:566
BINDING SITE FOR RESIDUE SO4 G 1
58
GC4
SOFTWARE
HOH G:20 , ARG G:554 , ASP G:558
BINDING SITE FOR RESIDUE SO4 G 2
59
GC5
SOFTWARE
HOH G:23 , ARG G:554 , TYR G:555 , ARG G:556
BINDING SITE FOR RESIDUE SO4 G 7
60
GC6
SOFTWARE
ARG G:505 , HOH G:889
BINDING SITE FOR RESIDUE SO4 G 16
61
GC7
SOFTWARE
LYS G:455 , THR G:456
BINDING SITE FOR RESIDUE SO4 G 17
62
GC8
SOFTWARE
ARG G:505 , LYS G:506 , HOH G:822
BINDING SITE FOR RESIDUE SO4 G 18
63
GC9
SOFTWARE
HOH G:77 , THR G:456 , GLN G:457
BINDING SITE FOR RESIDUE SO4 G 27
64
HC1
SOFTWARE
SER G:290 , GLN G:291 , SER G:292
BINDING SITE FOR RESIDUE SO4 G 42
65
HC2
SOFTWARE
PRO G:634 , SER G:635 , GLU G:636 , ARG G:654 , HOH G:840
BINDING SITE FOR RESIDUE SO4 G 51
66
HC3
SOFTWARE
SO4 G:56 , ARG G:657 , ALA G:658 , THR G:659
BINDING SITE FOR RESIDUE SO4 G 55
67
HC4
SOFTWARE
SO4 G:55 , ARG G:657 , THR G:659 , ASN G:661
BINDING SITE FOR RESIDUE SO4 G 56
68
HC5
SOFTWARE
CYS H:1287 , CYS H:1290 , CYS H:1314 , CYS H:1317
BINDING SITE FOR RESIDUE ZN H 1
69
HC6
SOFTWARE
CYS H:1348 , CYS H:1353 , CYS H:1367 , CYS H:1372
BINDING SITE FOR RESIDUE ZN H 2
70
HC7
SOFTWARE
ASP H:1397 , CYS H:1398 , GLU H:1399 , ARG H:1435 , ARG H:1442
BINDING SITE FOR RESIDUE SO4 H 19
71
HC8
SOFTWARE
LYS G:277 , ARG H:1306 , LYS H:1315
BINDING SITE FOR RESIDUE SO4 H 60
72
HC9
SOFTWARE
ALA H:1336 , HIS H:1337
BINDING SITE FOR RESIDUE SO4 H 61
73
IC1
SOFTWARE
TRP H:1345 , LYS H:1379
BINDING SITE FOR RESIDUE SO4 H 65
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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