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3FAT
Asym. Unit
Info
Asym.Unit (149 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
X-RAY STRUCTURE OF IGLUR4 FLIP LIGAND-BINDING CORE (S1S2) IN COMPLEX WITH (S)-AMPA AT 1.90A RESOLUTION
Authors
:
C. Kasper, K. Frydenvang, P. Naur, M. Gajhede, J. S. Kastrup
Date
:
18 Nov 08 (Deposition) - 09 Dec 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Ionotropic Glutamate Receptors, Iglur4, Flip, Ligand-Binding Core, Agonist Complex, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Kasper, K. Frydenvang, P. Naur, M. Gajhede, D. S. Pickering, J. S. Kastrup
Molecular Mechanism Of Agonist Recognition By The Ligand-Binding Core Of The Ionotropic Glutamate Receptor 4
Febs Lett. V. 582 4089 2008
[
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
2a: (S)-ALPHA-AMINO-3-HYDROXY-5-METHYL... (AMQa)
2b: (S)-ALPHA-AMINO-3-HYDROXY-5-METHYL... (AMQb)
2c: (S)-ALPHA-AMINO-3-HYDROXY-5-METHYL... (AMQc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
6
Ligand/Ion
ACETIC ACID
2
AMQ
3
Ligand/Ion
(S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONICACID
3
GOL
9
Ligand/Ion
GLYCEROL
4
SO4
7
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:59 , PRO A:87 , LEU A:88 , THR A:89 , ARG A:94 , LEU A:136 , GLY A:139 , SER A:140 , THR A:141 , GLU A:191 , MET A:194 , TYR A:218 , HOH A:310 , HOH A:312
BINDING SITE FOR RESIDUE AMQ A 427
02
AC2
SOFTWARE
TYR B:59 , PRO B:87 , THR B:89 , ARG B:94 , GLY B:139 , SER B:140 , THR B:141 , LEU B:190 , GLU B:191 , MET B:194 , HOH B:288 , HOH B:296
BINDING SITE FOR RESIDUE AMQ B 428
03
AC3
SOFTWARE
TYR C:59 , PRO C:87 , THR C:89 , ARG C:94 , LEU C:136 , GLY C:139 , SER C:140 , THR C:141 , LEU C:190 , GLU C:191 , MET C:194 , TYR C:218 , HOH C:300 , HOH C:311
BINDING SITE FOR RESIDUE AMQ C 429
04
AC4
SOFTWARE
ASP A:137 , SER A:138 , LYS A:142 , ARG A:146 , HOH A:315 , HOH A:334 , HOH A:368 , HOH A:387 , HOH A:1131
BINDING SITE FOR RESIDUE SO4 A 261
05
AC5
SOFTWARE
ARG A:146 , TRP A:157 , ARG A:161 , HOH A:1138
BINDING SITE FOR RESIDUE SO4 A 262
06
AC6
SOFTWARE
HIS A:44 , LYS A:238 , ILE C:68
BINDING SITE FOR RESIDUE SO4 A 263
07
AC7
SOFTWARE
ARG A:2 , HOH A:1137 , ARG B:2 , ARG C:2
BINDING SITE FOR RESIDUE SO4 A 264
08
AC8
SOFTWARE
ARG B:62 , LYS B:67 , ARG C:62 , LYS C:67
BINDING SITE FOR RESIDUE SO4 C 261
09
AC9
SOFTWARE
GLY A:225 , SER A:226 , SER A:227 , ARG B:2
BINDING SITE FOR RESIDUE SO4 B 261
10
BC1
SOFTWARE
HOH B:374 , HOH B:474 , HOH B:486 , HIS C:44 , LYS C:238
BINDING SITE FOR RESIDUE SO4 C 262
11
BC2
SOFTWARE
ASP C:214 , SER C:215 , SER C:240 , GLU C:241 , HOH C:270 , HOH C:310 , HOH C:368 , HOH C:371 , HOH C:374
BINDING SITE FOR RESIDUE GOL C 263
12
BC3
SOFTWARE
PRO C:103 , PHE C:104 , MET C:105 , SER C:106 , SER C:215 , LYS C:216 , SER C:240 , ACY C:267 , HOH C:348 , HOH C:378
BINDING SITE FOR RESIDUE GOL C 264
13
BC4
SOFTWARE
PRO A:103 , MET A:105 , SER A:106 , SER A:240 , HOH A:538 , SER B:215 , LYS B:216 , HOH B:326 , HOH B:367 , HOH B:624
BINDING SITE FOR RESIDUE GOL B 262
14
BC5
SOFTWARE
SER A:215 , LYS A:216 , PRO B:103 , PHE B:104 , SER B:106 , SER B:240 , LEU B:245 , ACY B:267 , HOH B:300 , HOH B:331 , HOH B:362 , HOH B:387 , HOH B:476
BINDING SITE FOR RESIDUE GOL B 263
15
BC6
SOFTWARE
SER A:226 , SER A:227 , ARG A:229 , THR A:230 , HOH A:410 , GLY C:225
BINDING SITE FOR RESIDUE GOL A 265
16
BC7
SOFTWARE
SER A:240 , GLU A:241 , HOH A:555 , HOH A:822 , ASP B:214 , SER B:215 , LYS B:216 , HOH B:382 , HOH B:390 , HOH B:416
BINDING SITE FOR RESIDUE GOL B 264
17
BC8
SOFTWARE
SER C:226 , SER C:227 , ARG C:229 , THR C:230 , PRO C:231 , HOH C:390 , HOH C:625
BINDING SITE FOR RESIDUE GOL C 265
18
BC9
SOFTWARE
ASN C:27 , LYS C:48 , TYR C:49
BINDING SITE FOR RESIDUE GOL C 266
19
CC1
SOFTWARE
GLY B:116 , THR B:117 , ILE B:119 , GLU B:120 , MET B:207
BINDING SITE FOR RESIDUE GOL B 265
20
CC2
SOFTWARE
SER A:106 , HOH A:604 , SER B:215
BINDING SITE FOR RESIDUE ACY A 266
21
CC3
SOFTWARE
ALA B:132 , TYR B:159 , GLU B:164 , PRO B:165 , VAL B:167 , ARG B:178
BINDING SITE FOR RESIDUE ACY B 266
22
CC4
SOFTWARE
SER A:215 , MET B:105 , SER B:106 , GOL B:263 , HOH B:1085 , HOH B:1139
BINDING SITE FOR RESIDUE ACY B 267
23
CC5
SOFTWARE
SER C:106 , SER C:215 , GOL C:264 , HOH C:371
BINDING SITE FOR RESIDUE ACY C 267
24
CC6
SOFTWARE
HIS B:21 , GLU B:22 , LYS B:29 , HOH B:1063
BINDING SITE FOR RESIDUE ACY B 268
25
CC7
SOFTWARE
ARG B:146 , ARG C:146
BINDING SITE FOR RESIDUE ACY C 268
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3fata_ (A:)
1b: SCOP_d3fatb_ (B:)
1c: SCOP_d3fatc_ (C:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
automated matches
(76)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(25)
1a
d3fata_
A:
1b
d3fatb_
B:
1c
d3fatc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3fatA01 (A:2-107,A:217-256)
1b: CATH_3fatC01 (C:2-107,C:217-256)
1c: CATH_3fatB01 (B:2-107,B:217-255)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rat (Rattus norvegicus)
(37)
1a
3fatA01
A:2-107,A:217-256
1b
3fatC01
C:2-107,C:217-256
1c
3fatB01
B:2-107,B:217-255
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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