3EMF - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE HIABD2

Authors :   G. Meng, G. Waksman

Date :   24 Sep 08 (Deposition) - 04 Nov 08 (Release) - 09 Dec 08 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Hia, Adhesin, Binding Domain, Autotransporter, Trimeric, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Meng, J. W. St Geme, G. Waksman
Repetitive Architecture Of The Haemophilus Influenzae Hia Trimeric Autotransporter
J. Mol. Biol. V. 384 824 2008
PubMed-ID: 18948113 | Reference-DOI: 10.1016/J.JMB.2008.09.085
(for further references see the PDB file header)

Molecule 1 - HIA (ADHESIN)
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	HIA BD2, UNP RESIDUES 51-166
	Gene	:	HIA
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	727

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3EMF)

(no "Site" information available for 3EMF)

(no "SS Bond" information available for 3EMF)

Asymmetric/Biological Unit

No.	Residues
1	Gly B:146	-	Gly B:147
2	Gly C:146	-	Gly C:147

(no "SAP(SNP)/Variant" information available for 3EMF)

(no "PROSITE Motif" information available for 3EMF)

(no "Exon" information available for 3EMF)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:113
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
         Q48152_HAEIF    53 TPVTNKLKAYGDANFNFTNNSIADAEKQVQEAYKGLLNLNEKNASDKLLVEDNTAATVGNLRKLGWVLSSKNGTRNEKSQQVKHADEVLFEGKGGVQVTSTSENGKHTITFAL 165
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................hhhhhhhhhhhhhh......................hhhhhh..eeeeeeee.....eeeeee...eeeeee....eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 3emf A  53 TPVTNKLKAYGDANFNFTNNSIADAEKQVQEAYKGLLNLNEKNASDKLLVEDNTAATVGNLRKLGWVLSSKNGTRNEKSQQVKHADEVLFEGKGGVQVTSTSENGKHTITFAL 165
                                    62        72        82        92       102       112       122       132       142       152       162

Chain B from PDB  Type:PROTEIN  Length:110
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
         Q48152_HAEIF    53 TPVTNKLKAYGDANFNFTNNSIADAEKQVQEAYKGLLNLNEKNASDKLLVEDNTAATVGNLRKLGWVLSSKNGTRNEKSQQVKHADEVLFEGKGGVQVTSTSENGKHTITFAL 165
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee......hhhhhhhhhhhhhhhhhhh..ee......---.........hhhhhh..eeeeeeee..eeeeeeeee...eeeeee....eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 3emf B  53 TPVTNKLKAYGDANFNFTNNSIADAEKQVQEAYKGLLNLNEKNA---LLVEDNTAATVGNLRKLGWVLSSKNGTRNEKSQQVKHADEVLFEGKGGVQVTSTSENGKHTITFAL 165
                                    62        72        82        92   |   102       112       122       132       142       152       162   
                                                                      96 100

Chain C from PDB  Type:PROTEIN  Length:113
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:113
                                    62        72        82        92       102       112       122       132       142       152       162   
         Q48152_HAEIF    53 TPVTNKLKAYGDANFNFTNNSIADAEKQVQEAYKGLLNLNEKNASDKLLVEDNTAATVGNLRKLGWVLSSKNGTRNEKSQQVKHADEVLFEGKGGVQVTSTSENGKHTITFAL 165
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee...........hhhhhhhhhhhhhh..ee..................hhhhhh..eeeeeeee.....eeeeee...eeeeee....eeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 3emf C  53 TPVTNKLKAYGDANFNFTNNSIADAEKQVQEAYKGLLNLNEKNASDKLLVEDNTAATVGNLRKLGWVLSSKNGTRNEKSQQVKHADEVLFEGKGGVQVTSTSENGKHTITFAL 165
                                    62        72        82        92       102       112       122       132       142       152       162

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3EMF)

(no "CATH Domain" information available for 3EMF)

(no "Pfam Domain" information available for 3EMF)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (Q48152_HAEIF | Q48152)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0019867	outer membrane	The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3emf)

	Sites
(no "Sites" information available for 3emf)

	Cis Peptide Bonds
		Gly B:146 - Gly B:147	[ RasMol ]
		Gly C:146 - Gly C:147	[ RasMol ]

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		Orientation in Membranes	:	OPM
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		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	Q48152_HAEIF \| Q48152
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		Interatomic Contacts of Structural Units	:	CSU
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	Q48152_HAEIF \| Q48152
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UniProtKB/TrEMBL
	Q48152_HAEIF \| Q48152	:	1s7m 2gr7 2gr8 3emi 3emo

1s7m	HIABD1
2gr7	HIA992-1098
2gr8	HIA1022-1098
3emi	HIA307-422
3emo	HIA937-1098

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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