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(-) Description

Title :  CRYSTAL STRUCTURE OF HIABD1
 
Authors :  H. J. Yeo, S. E. Cotter, S. Laarmann, T. Juehne, J. W. St Geme, G. Waksman
Date :  29 Jan 04  (Deposition) - 06 Apr 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)
Keywords :  Adhesion, Homotrimer, Autotransporter, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Yeo, S. E. Cotter, S. Laarmann, T. Juehne, J. W. St Geme, G. Waksman
Structural Basis For Host Recognition By The Haemophilus Influenzae Hia Autotransporter.
Embo J. V. 23 1245 2004
PubMed-ID: 15029242  |  Reference-DOI: 10.1038/SJ.EMBOJ.7600142
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HIA
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX6P1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HIA
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727
    Strain: STRAIN 11

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF
Biological Unit 3 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1S7M)

(-) Sites  (0, 0)

(no "Site" information available for 1S7M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1S7M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1S7M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1S7M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1S7M)

(-) Exons   (0, 0)

(no "Exon" information available for 1S7M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:158
                                   557       567       577       587       597       607       617       627       637       647       657       667       677       687       697        
         Q48152_HAEIF   548 GAKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELA 705
               SCOP domains d1s7ma_ A: Autotransporter Hia                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeee............eeee..eeeeeee.eeee....ee...........hhhhhhhhhhhhhh..ee...................hhhhhhh.eeeeee.ee......eeeeee...eeeeee...eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7m A 548 GAKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELA 705
                                   557       567       577       587       597       607       617       627       637       647       657       667       677       687       697        


Chain B from PDB  Type:PROTEIN  Length:157
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:157
                                   558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       
         Q48152_HAEIF   549 AKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELA 705
               SCOP domains d1s7mb_ B: Autotransporter Hia                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeee............eeee..eeeeeee.eeee....ee...........hhhhhhhhhhhhhh..ee...................hhhhhhh.eeeeee.ee......eeeeee...eeeeee...eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7m B 549 AKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELA 705
                                   558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       


Chain C from PDB  Type:PROTEIN  Length:157
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:157
                                   559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       
         Q48152_HAEIF   550 KTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELAK 706
               SCOP domains d1s7mc_ C: Autotransporter Hia                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee......hhhhh..eeee..eeeeeeeeeeee....ee......hhhhhhhhhhhhhhhhhhh..ee...................hhhhhhh.eeeeee.ee......eeeeee...eeeee....eeeeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7m C 550 KTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELAK 706
                                   559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       


Chain D from PDB  Type:PROTEIN  Length:158
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:158
                                   558       568       578       588       598       608       618       628       638       648       658       668       678       688       698        
         Q48152_HAEIF   549 AKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELAK 706
               SCOP domains d1s7md_ D: Autotransporter Hia                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeee............eeee..eeeeeee.eeee....ee......hhhhhhhhhhhhhh.......ee...................hhhhhhh.eeeeee.ee......eeeeee...eeeeee...eeeeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7m D 549 AKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELAK 706
                                   558       568       578       588       598       608       618       628       638       648       658       668       678       688       698        


Chain E from PDB  Type:PROTEIN  Length:157
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:157
                                   558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       
         Q48152_HAEIF   549 AKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELA 705
               SCOP domains d1s7me_ E: Autotransporter Hia                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeee.....hhhhh..eeee..eeee....eeee............hhhhhhhhhhhhhhhhhhh.......................hhhhhhh.eeeeee.........eeeeee...eeeeee...eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7m E 549 AKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELA 705
                                   558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       


Chain F from PDB  Type:PROTEIN  Length:157
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:157
                                   558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       
         Q48152_HAEIF   549 AKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELA 705
               SCOP domains d1s7mf_ F: Autotransporter Hia                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeee............eeee..eeeeeee.ee......ee...........hhhhhhhhhh......ee...................hhhhhhh.eeeeee.ee......eeeeee...eeeee....eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s7m F 549 AKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELA 705
                                   558       568       578       588       598       608       618       628       638       648       658       668       678       688       698
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1S7M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1S7M)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q48152_HAEIF | Q48152)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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  1s7m
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  Q48152_HAEIF | Q48152
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 Related Entries

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UniProtKB/TrEMBL
        Q48152_HAEIF | Q48152: 2gr7 2gr8 3emf 3emi 3emo

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