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(-) Description

Title :  HIA 1022-1098
 
Authors :  G. Meng, G. Waksman
Date :  23 Apr 06  (Deposition) - 23 May 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,D  (1x)
Biol. Unit 2:  B,E,F  (1x)
Keywords :  Trimeric Autotransporter, Adhesion, Crystal Structure, Protein Secretion, Microbial Pathogenesis, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Meng, N. K. Surana, J. W. St Geme Iii, G. Waksman
Structure Of The Outer Membrane Translocator Domain Of The Haemophilus Influenzae Hia Trimeric Autotransporter.
Embo J. V. 25 2297 2006
PubMed-ID: 16688217  |  Reference-DOI: 10.1038/SJ.EMBOJ.7601132
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ADHESIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PASK-IBA12
    Expression System Strain: BL21(B834)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1128-1204
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727
    Strain: STRAIN 11

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A CD  
Biological Unit 2 (1x):  B  EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GR8)

(-) Sites  (0, 0)

(no "Site" information available for 2GR8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GR8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GR8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GR8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GR8)

(-) Exons   (0, 0)

(no "Exon" information available for 2GR8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:78
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:78
                                  1030      1040      1050      1060      1070      1080      1090        
        Q48152_HAEIF   1021 GKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
               SCOP domains -d2gr8a1 A:1022-1098 Adhesin Hia                                               SCOP domains
               CATH domains 2gr8A00 A:1021-1098 GSPII I/J protein-like                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                2gr8 A 1021 SKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
                                  1030      1040      1050      1060      1070      1080      1090        


Chain B from PDB  Type:PROTEIN  Length:78
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:78
                                  1030      1040      1050      1060      1070      1080      1090        
        Q48152_HAEIF   1021 GKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
               SCOP domains d2gr8b_ B: Adhesin Hia                                                         SCOP domains
               CATH domains 2gr8B00 B:1021-1098 GSPII I/J protein-like                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.........eeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                2gr8 B 1021 SKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
                                  1030      1040      1050      1060      1070      1080      1090        


Chain C from PDB  Type:PROTEIN  Length:78
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:78
                                  1030      1040      1050      1060      1070      1080      1090        
        Q48152_HAEIF   1021 GKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
               SCOP domains d2gr8c_ C: Adhesin Hia                                                         SCOP domains
               CATH domains 2gr8C00 C:1021-1098 GSPII I/J protein-like                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.....eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                2gr8 C 1021 SKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
                                  1030      1040      1050      1060      1070      1080      1090        


Chain D from PDB  Type:PROTEIN  Length:78
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:78
                                  1030      1040      1050      1060      1070      1080      1090        
        Q48152_HAEIF   1021 GKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
               SCOP domains d2gr8d_ D: Adhesin Hia                                                         SCOP domains
               CATH domains 2gr8D00 D:1021-1098 GSPII I/J protein-like                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.........eeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.....eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                2gr8 D 1021 SKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
                                  1030      1040      1050      1060      1070      1080      1090        


Chain E from PDB  Type:PROTEIN  Length:78
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:78
                                  1030      1040      1050      1060      1070      1080      1090        
        Q48152_HAEIF   1021 GKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
               SCOP domains d2gr8e_ E: Adhesin Hia                                                         SCOP domains
               CATH domains 2gr8E00 E:1021-1098 GSPII I/J protein-like                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.........eeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                2gr8 E 1021 SKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
                                  1030      1040      1050      1060      1070      1080      1090        


Chain F from PDB  Type:PROTEIN  Length:78
 aligned with Q48152_HAEIF | Q48152 from UniProtKB/TrEMBL  Length:1098

    Alignment length:78
                                  1030      1040      1050      1060      1070      1080      1090        
        Q48152_HAEIF   1021 GKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
               SCOP domains d2gr8f_ F: Adhesin Hia                                                         SCOP domains
               CATH domains 2gr8F00 F:1021-1098 GSPII I/J protein-like                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                2gr8 F 1021 SKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW 1098
                                  1030      1040      1050      1060      1070      1080      1090
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GR8)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q48152_HAEIF | Q48152)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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  Q48152_HAEIF | Q48152
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q48152_HAEIF | Q48152: 1s7m 2gr7 3emf 3emi 3emo

(-) Related Entries Specified in the PDB File

2gr7 HIA 992-1098