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(-) Description

Title :  CRYSTAL STRUCTURE OF A CHIMERIC RECEPTOR BINDING PROTEIN FROM LACTOCOCCAL PHAGES SUBSPECIES TP901-1 AND P2
 
Authors :  M. I. Siponen, S. Blangy, S. Spinelli, C. Cambillau, V. Campanacci
Date :  23 May 08  (Deposition) - 14 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Lactococcal Phage P2, Lactococcal Phage Tp901-1, Receptor Binding Protein, Virus-Viral Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Siponen, S. Spinelli, S. Blangy, S. Moineau, C. Cambillau, V. Campanacci
Crystal Structure Of A Chimeric Receptor Binding Protein Constructed From Two Lactococcal Phages
J. Bacteriol. V. 191 3220 2009
PubMed-ID: 19286807  |  Reference-DOI: 10.1128/JB.01637-08

(-) Compounds

Molecule 1 - BASEPLATE PROTEIN, RECEPTOR BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST17 O/I
    Expression System Strain: C41PLYSROS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-62, UNP RESIDUES 162-264
    Gene: ORF49, ORF18
    Organism Scientific: LACTOCOCCUS PHAGE TP901-1, LACTOCOCCUS PHAGE P2
    Organism Taxid: 35345, 254252
    Strain: TP901-1, P2
    Synonym: BPP

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with RBP_BPLP2 | Q71AW2 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:263
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
            RBP_BPLP2     2 TIKNFTFFSPNSTEFPVGSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK 264
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hh----------------------------hhhhhh-----hhh...........------------........------------.....--------------....-------------------------------------------......eeeeeeeee..eeeeeeee...eeeeeeeeee..............hhhhh....eeeeeee.....eeeeee.....eee.........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d8m A  17 TIND----------------------------DLEAIN-----SELTSGGNVVHKTG------------DETIAGKK------------TFTGN--------------VEVN-------------------------------------------GSLTLPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK 165
                               |     -         -         -  |    | -   |    33      |  -        41      |  -        49   |     -        55 |       -         -         -         -     |  62        72        82        92       102       112       122       132       142       152       162   
                              20                           21   26    27           40           41     48           49  53             54 57                                          58
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 Classification and Annotation

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(no "SCOP Domain" information available for 3D8M)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (4, 7)

Asymmetric Unit(hide GO term definitions)
Chain A   (RBP_BPLP2 | Q71AW2)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBP_BPLP2 | Q71AW2: 1zru 2bsd 2bse 2wzp 2x53 3da0 4v5i
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(-) Related Entries Specified in the PDB File

1zru PHAGE P2 NATIVE PROTEIN IN COMPLEX WITH GLYCEROL
2bsd NATIVE PROTEIN OF HEAD DOMAIN
2bse PHAGE P2 NATIVE PROTEIN HEAD DOMAIN IN COMPLEX WITH A LLAMA VHH DOMAIN
2f0c NATIVE PROTEIN OF HECK AND SHOULDER DOMAINS