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(-) Description

Title :  STRUCTURE OF THE RECEPTOR BINDING PROTEIN (ORF49, BBP) FROM LACTOPHAGE TP901-1
 
Authors :  C. Cambillau, S. Spinelli
Date :  13 Nov 05  (Deposition) - 28 Mar 06  (Release) - 06 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Beta-Barrel, Beta Prism, 3 Helix Parallel Bundle, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Spinelli, V. Campanacci, S. Blangy, S. Moineau, M. Tegoni, C. Cambillau
Modular Structure Of The Receptor Binding Proteins Of Lactococcus Lactis Phages. The Rbp Structure Of The Temperate Phage Tp901-1.
J. Biol. Chem. V. 281 14256 2006
PubMed-ID: 16549427  |  Reference-DOI: 10.1074/JBC.M600666200

(-) Compounds

Molecule 1 - PHAGE TP901-1 ORF49 (BPP)
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PDEST17
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: ORF49/BBP
    Organism Scientific: LACTOCOCCUS PHAGE TP901-1
    Organism Taxid: 35345

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:118 , ASP A:135 , ARG B:155 , HOH B:940 , HOH B:1044 , HOH B:1045BINDING SITE FOR RESIDUE GOL B 801
2AC2SOFTWAREHIS B:133 , ASP B:135 , PHE B:145 , HOH B:895 , HOH B:938 , VAL C:126 , ARG C:155BINDING SITE FOR RESIDUE GOL B 802
3AC3SOFTWARETHR A:39 , VAL A:126 , ARG A:155 , HOH A:273 , HIS C:133 , ASP C:135 , PHE C:145 , HOH C:888 , HOH C:944 , HOH C:989 , HOH C:1020BINDING SITE FOR RESIDUE GOL C 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F0C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F0C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F0C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F0C)

(-) Exons   (0, 0)

(no "Exon" information available for 2F0C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
 aligned with Q9G096_9CAUD | Q9G096 from UniProtKB/TrEMBL  Length:163

    Alignment length:147
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       
         Q9G096_9CAUD    17 TINDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEVNGSLTLPTKSWSGELGGGIILSLRKKGTTVEYSIGGEISSSILANSNLVNRSVPNEFCPRNRCSLVGHMVGGWNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID 163
               SCOP domains d2f0ca2 A:17-62                               d2f0ca1 A:63-163 Baseplate protein (bpp), C-terminal domain                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..........eee...eee...eee...ee..eeeeeeeee..eeeeeeee..eeeeeeee.........ee......hhhhh....eeeeeee.....eeeeee......ee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f0c A  17 TINDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEVNGSLTLPTKSWSGELGGGIILSLRKKGTTVEYSIGGEISSSILANSNLVNRSVPNEFCPRNRCSLVGHMVGGWNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID 163
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       


Chain B from PDB  Type:PROTEIN  Length:148
 aligned with Q9G096_9CAUD | Q9G096 from UniProtKB/TrEMBL  Length:163

    Alignment length:148
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155        
         Q9G096_9CAUD    16 ETINDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEVNGSLTLPTKSWSGELGGGIILSLRKKGTTVEYSIGGEISSSILANSNLVNRSVPNEFCPRNRCSLVGHMVGGWNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID 163
               SCOP domains d2f0cb2 B:16-62                                d2f0cb1 B:63-163 Baseplate protein (bpp), C-terminal domain                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..........eee...eee...eee...ee..eeeeeeeee..eeeeeeee..eeeeeeee.................hhhhh....eeeeeee.....eeeeee......ee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f0c B  16 ETINDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEVNGSLTLPTKSWSGELGGGIILSLRKKGTTVEYSIGGEISSSILANSNLVNRSVPNEFCPRNRCSLVGHMVGGWNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID 163
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155        


Chain C from PDB  Type:PROTEIN  Length:147
 aligned with Q9G096_9CAUD | Q9G096 from UniProtKB/TrEMBL  Length:163

    Alignment length:147
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       
         Q9G096_9CAUD    17 TINDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEVNGSLTLPTKSWSGELGGGIILSLRKKGTTVEYSIGGEISSSILANSNLVNRSVPNEFCPRNRCSLVGHMVGGWNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID 163
               SCOP domains d2f0cc2 C:17-62                               d2f0cc1 C:63-163 Baseplate protein (bpp), C-terminal domain                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..........eee...eee...eee...ee..eeeeeeeee..eeeeeeee..eeeeeeee.........ee......hhhhh....eeeeeee.....eeeeee......ee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f0c C  17 TINDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEVNGSLTLPTKSWSGELGGGIILSLRKKGTTVEYSIGGEISSSILANSNLVNRSVPNEFCPRNRCSLVGHMVGGWNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID 163
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2F0C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F0C)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (Q9G096_9CAUD | Q9G096)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0098025    virus tail, baseplate    Multiprotein component at the distal (head) end of the virus tail to which fibers of tailed viruses may be attached.

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  2f0c
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9G096_9CAUD | Q9G096: 3d8m 3da0 3ejc 3hg0 3u6x 4hem 4hep 4ios 4v96

(-) Related Entries Specified in the PDB File

1zru STRUCTURE OF THE LACTOPHAGE P2 RECEPTOR BINDING PROTEIN IN COMPLEX WITH GLYCEROL
2bsd STRUCTURE OF THE LACTOPHAGE P2 RECEPTOR BINDING PROTEIN
2bse STRUCTURE OF LACTOCOCCAL BACTERIOPHAGE P2 RECEPTOR BINDING PROTEIN IN COMPLEX WITH A LLAMA VHH DOMAIN