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(-) Description

Title :  COMPLEX OF LACTOCOCCAL PHAGE TP901-1 WITH A LLAMA VHH (VHH17) BINDER (NANOBODY)
 
Authors :  A. Desmyter, S. Spinelli, C. Farenc, S. Blangy, C. Bebeacua, D. Van Sin J. Mahony, C. Cambillau
Date :  04 Oct 12  (Deposition) - 20 Mar 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,G
Biol. Unit 1:  A,G  (3x)
Keywords :  Alpha-Beta, Phage Receptor Binding Protein, Llama Glama Vhh Domain, Viral Protein, Cell Adhesion-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Desmyter, C. Farenc, J. Mahony, S. Spinelli, C. Bebeacua, S. Blangy D. Veesler, D. Van Sinderen, C. Cambillau
Viral Infection Modulation And Neutralization By Camelid Nanobodies
Proc. Natl. Acad. Sci. Usa V. 110 E1371 2013
PubMed-ID: 23530214  |  Reference-DOI: 10.1073/PNAS.1301336110

(-) Compounds

Molecule 1 - BPP
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETG20A
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BPP, ORF49
    Organism Scientific: LACTOCOCCUS PHAGE TP901-1
    Organism Taxid: 35345
    Synonym: BASEPLATE PROTEIN
 
Molecule 2 - VHH17 DOMAIN
    Chains: G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AG
Biological Unit 1 (3x): AG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:69 , GLU A:70 , ARG A:107 , HOH A:374 , HOH A:378BINDING SITE FOR RESIDUE SO4 A 201

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1G:22 -G:96

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HEP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains d4hepa1 A:2-62 automated matches                             d4hepa2 A:63-163 automated matches                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhh...................................eeeeeeeee..eeeeeeee..eeeeeeee.................hhhhh....eeeeeee.....eeeeee......ee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hep A   2 ASIKKVYRGMKNGAETINDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEVNGSLTLPTKSWSGELGGGIILSLRKKGTTVEYSIGGEISSSILANSNLVNRSVPNEFCPRNRCSLVGHMVGGWNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID 163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161  


Chain G from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains d4hepg_ G: automated matches                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...ee.....eeeeeeee......eeeeeeee......eeeeeee.....eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeeeeee..eeee...hhhhh.ee...eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hep G   2 VQLVESGGGLVQPGGSLRLSCEASGFSFDDYAIGWFRQAPGKEREGVSYISMSDGRTYVADSVTGRFTISSDNAKNTVYLQMNSLKLEDTAVYYCAAGRFVTFGSAWSFVGGGPYGIDYWGKGTLVTVSS 131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
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 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HEP)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9G096_9CAUD | Q9G096: 2f0c 3d8m 3da0 3ejc 3hg0 3u6x 4hem 4ios 4v96

(-) Related Entries Specified in the PDB File

3ejc 3f0c 3hg0 4hem 4ios