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(-) Description

Title :  STRUCTURE OF THE LACTOPHAGE P2 RECEPTOR BINDING PROTEIN IN COMPLEX WITH GLYCEROL
 
Authors :  S. Spinelli, D. M. Tremblay, M. Tegoni, S. Blangy, C. Huyghe, A. Desmyte S. Labrie, H. De Haard, S. Moineau, C. Cambillau, Structural Proteo Europe (Spine)
Date :  22 May 05  (Deposition) - 28 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.73
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  3 Domains: Beta Barrel, Beta Prism, Beta Barrel, Structural Genomics, Structural Proteomics In Europe, Spine, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Tremblay, M. Tegoni, S. Spinelli, V. Campanacci, S. Blangy, C. Huyghe, A. Desmyter, S. Labrie, S. Moineau, C. Cambillau
Receptor-Binding Protein Of Lactococcus Lactis Phages: Identification And Characterization Of The Saccharide Receptor-Binding Site.
J. Bacteriol. V. 188 2400 2006
PubMed-ID: 16547026  |  Reference-DOI: 10.1128/JB.188.7.2400-2410.2006

(-) Compounds

Molecule 1 - LACTOPHAGE P2 RECEPTOR BINDING PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI K12
    Expression System Strain: K12
    Expression System Taxid: 83333
    Gene: ORF 18
    Organism Scientific: LACTOCOCCUS LACTIS PHAGE P2
    Organism Taxid: 100641

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:219 , HIS A:232 , ASP A:234 , TRP A:244 , HOH A:2095 , HOH A:2255 , THR B:131 , ARG B:256BINDING SITE FOR RESIDUE GOL A 2001
2AC2SOFTWARESER B:219 , HIS B:232 , ASP B:234 , TRP B:244 , HOH B:2091 , HOH B:2109 , HOH B:2140 , ASN C:48 , THR C:49 , ARG C:256BINDING SITE FOR RESIDUE GOL B 2002
3AC3SOFTWAREARG A:256 , HOH A:2025 , HOH A:2289 , SER C:219 , HIS C:232 , ASP C:234 , TRP C:244 , HOH C:2062 , HOH C:2104 , HOH C:2165BINDING SITE FOR RESIDUE GOL C 2003
4AC4SOFTWAREMET A:29 , GLY A:32 , MET A:33 , HOH A:2086 , HOH A:2202 , HOH A:2365 , HOH B:2115BINDING SITE FOR RESIDUE GOL A 2004
5AC5SOFTWARETRP A:43 , GLY C:32 , MET C:33 , THR C:144 , HOH C:2155 , HOH C:2186 , HOH C:2219 , HOH C:2360BINDING SITE FOR RESIDUE GOL C 2005
6AC6SOFTWAREGLY B:32 , MET B:33 , THR B:144 , HOH B:2103 , HOH B:2119 , HOH B:2173 , HOH B:2252 , TRP C:43BINDING SITE FOR RESIDUE GOL B 2006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZRU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZRU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZRU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZRU)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZRU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
 aligned with RBP_BPLP2 | Q71AW2 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:263
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
            RBP_BPLP2     2 TIKNFTFFSPNSTEFPVGSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK 264
               SCOP domains d1zrua3           A:2-140 Receptor binding protein, rbp, N-terminal domain                                                                 d1zrua2 A:141-161    d1zrua1 A:162-264 receptor binding protein, rbp, C-terminal domain                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...----------hhhhhhhhhhhhhh......eeeeee..ee...eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee........eeeeee................eeeeeeeeee....eeeeee...eee..eeee.eeee...ee..eeeeeeeee..eeeeeeee...eeeeeeeeee..............hhhhh....eeeeeee.....eeeeee.....eee.........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zru A   2 TIKNFTF----------GSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK 264
                                  |  -       |21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
                                  8         19                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:251
 aligned with RBP_BPLP2 | Q71AW2 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:263
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
            RBP_BPLP2     2 TIKNFTFFSPNSTEFPVGSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK 264
               SCOP domains d1zru            b3 B:2-140 Receptor binding protein, rbp, N-terminal domain                                                               d1zrub2 B:141-161    d1zrub1 B:162-264 receptor binding protein, rbp, C-terminal domain                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..------------.hhhhhhhhhhhhh......eeeeee..ee...eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee........eeeeee................eeeeeeeeee....eeeeee...eee..eeee.eeee...ee..eeeeeeeee..eeeeeeee...eeeeeeeeee..............hhhhh....eeeeeee.....eeeeee.....eee.........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zru B   2 TIKNF------------GSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK 264
                                |    -       |21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
                                6           19                                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:254
 aligned with RBP_BPLP2 | Q71AW2 from UniProtKB/Swiss-Prot  Length:264

    Alignment length:263
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
            RBP_BPLP2     2 TIKNFTFFSPNSTEFPVGSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK 264
               SCOP domains d1zruc3          C:2-140 Receptor binding protein, rbp, N-terminal domain                                                                  d1zruc2 C:141-161    d1zruc1 C:162-264 receptor binding protein, rbp, C-terminal domain                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....---------hhhhhhhhhhhhhh......eeeeee..ee...eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee........eeeeee................eeeeeeeeee....eeeeee...eee..eeee.eeee...ee..eeeeeeeee..eeeeeeee...eeeeeeeeee..............hhhhh....eeeeeee.....eeeeee.....eee.........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zru C   2 TIKNFTFF---------GSNNDGKLYMMLTGMDYRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELLNETVALKGDSVNYIHANIDLTQTANPVSLSAETANNSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQTLTVEAGNGLQLQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRGNGSYFIK 264
                                   | -       |21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   
                                   9        19
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZRU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZRU)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (RBP_BPLP2 | Q71AW2)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBP_BPLP2 | Q71AW2: 2bsd 2bse 2wzp 2x53 3d8m 3da0 4v5i

(-) Related Entries Specified in the PDB File

2bsd NATIVE PROTEIN
2bse NATIVE PROTEIN HEAD DOMAIN IN COMPLEX WITH A LLAMA VHH DOMAIN