3CQ0 - JenaLib

Asymmetric Unit (Jmol Viewer)

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TAL2_YEAST

Authors :   H. Huang, L. Niu, M. Teng

Date :   01 Apr 08 (Deposition) - 07 Apr 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A  (1x)
Biol. Unit 3: B  (1x)

Keywords :   Transaldolase, Alpha/Beta Barrel, Pentose Shunt, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Huang, H. Rong, X. Li, S. Tong, Z. Zhu, L. Niu, M. Teng
The Crystal Structure And Identification Of Nqm1/Ygr043C, A Transaldolase From Saccharomyces Cerevisiae
Proteins V. 73 1076 2008
PubMed-ID: 18831051 | Reference-DOI: 10.1002/PROT.22237

Molecule 1 - PUTATIVE TRANSALDOLASE YGR043C
	Chains	:	A, B
	EC Number	:	2.2.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B(+)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A
Biological Unit 3 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 33)

No.	Name	Count	Type	Full Name
1	EDO	17	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	14	Ligand/Ion	GLYCEROL
3	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 1 (3, 33)

No.	Name	Count	Type	Full Name
1	EDO	17	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	14	Ligand/Ion	GLYCEROL
3	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 2 (3, 17)

No.	Name	Count	Type	Full Name
1	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	7	Ligand/Ion	GLYCEROL
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 3 (3, 16)

No.	Name	Count	Type	Full Name
1	EDO	8	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	7	Ligand/Ion	GLYCEROL
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL A:121 , LYS A:122 , GLU A:157 , LYS A:161 , HIS A:162 , HOH A:472	BINDING SITE FOR RESIDUE EDO A 340
02	AC2	SOFTWARE	ASN A:184 , VAL A:185 , HOH A:542	BINDING SITE FOR RESIDUE EDO A 341
03	AC3	SOFTWARE	LYS A:20 , GLU A:40 , GLN A:42 , HOH A:475 , HOH A:635	BINDING SITE FOR RESIDUE EDO A 342
04	AC4	SOFTWARE	TYR A:70 , HIS A:74 , ASN A:84 , HIS A:126 , HOH A:650	BINDING SITE FOR RESIDUE EDO A 343
05	AC5	SOFTWARE	HIS A:79 , TYR A:326 , ASP B:293 , HOH B:371	BINDING SITE FOR RESIDUE EDO A 344
06	AC6	SOFTWARE	LEU A:98 , LYS A:99 , VAL A:100 , VAL A:101 , PRO A:102 , ARG A:140	BINDING SITE FOR RESIDUE EDO A 345
07	AC7	SOFTWARE	THR A:148 , TRP A:149 , LEU A:301 , THR A:308 , HOH A:360 , HOH A:366 , THR B:148 , TRP B:149 , THR B:308 , HOH B:358	BINDING SITE FOR RESIDUE PG4 A 346
08	AC8	SOFTWARE	ARG A:227 , LYS A:281 , GLU A:282 , HOH A:588	BINDING SITE FOR RESIDUE EDO A 347
09	AC9	SOFTWARE	HOH A:420 , HOH A:429 , HOH A:589	BINDING SITE FOR RESIDUE EDO A 348
10	BC1	SOFTWARE	SER A:289 , EDO B:348 , HOH B:567	BINDING SITE FOR RESIDUE EDO A 349
11	BC2	SOFTWARE	LYS B:88	BINDING SITE FOR RESIDUE EDO B 340
12	BC3	SOFTWARE	TYR B:70 , ASN B:84 , HIS B:126 , GOL B:351	BINDING SITE FOR RESIDUE EDO B 341
13	BC4	SOFTWARE	LYS B:118 , ALA B:119 , LYS B:122 , HOH B:476	BINDING SITE FOR RESIDUE EDO B 342
14	BC5	SOFTWARE	LYS B:20 , GLY B:23 , THR B:24 , HIS B:25 , HOH B:376	BINDING SITE FOR RESIDUE EDO B 343
15	BC6	SOFTWARE	LEU B:125 , HIS B:126 , HOH B:467 , HOH B:589	BINDING SITE FOR RESIDUE EDO B 345
16	BC7	SOFTWARE	THR B:95 , LYS B:99 , ALA B:134 , VAL B:136 , ARG B:140 , HOH B:572 , HOH B:593 , HOH B:594	BINDING SITE FOR RESIDUE PG4 B 346
17	BC8	SOFTWARE	HOH B:463	BINDING SITE FOR RESIDUE EDO B 347
18	BC9	SOFTWARE	EDO A:349 , GLU B:323 , HOH B:603	BINDING SITE FOR RESIDUE EDO B 348
19	CC1	SOFTWARE	LYS A:20 , THR A:24 , HIS A:25 , HOH A:371 , HOH A:621 , HOH A:622 , HOH A:635	BINDING SITE FOR RESIDUE GOL A 350
20	CC2	SOFTWARE	MET A:86 , ASP A:87 , LEU A:90 , ASP A:110 , ARG A:112 , LYS A:123 , ILE A:322 , HOH A:372 , HOH A:393 , HOH A:411 , HOH A:643	BINDING SITE FOR RESIDUE GOL A 351
21	CC3	SOFTWARE	HIS A:79 , GLU A:83 , ASP A:110 , ARG A:112 , LEU A:113 , HOH A:521	BINDING SITE FOR RESIDUE GOL A 352
22	CC4	SOFTWARE	HIS A:228 , GLY A:229 , TYR A:230 , LYS A:287	BINDING SITE FOR RESIDUE GOL A 353
23	CC5	SOFTWARE	ASP A:29 , ASN A:47 , LYS A:144 , PHE A:191 , ALA A:237 , SER A:238 , THR A:255 , HOH A:398 , HOH A:529 , HOH A:554	BINDING SITE FOR RESIDUE GOL A 354
24	CC6	SOFTWARE	GLU A:283 , HOH A:647 , HOH A:648	BINDING SITE FOR RESIDUE GOL A 355
25	CC7	SOFTWARE	SER A:319 , ALA A:320 , GLU A:323 , HOH A:380 , HOH A:439	BINDING SITE FOR RESIDUE GOL A 356
26	CC8	SOFTWARE	ARG B:194 , SER B:238 , ARG B:240 , GOL B:353	BINDING SITE FOR RESIDUE GOL B 349
27	CC9	SOFTWARE	ASP B:87 , LEU B:90 , ASP B:110 , ARG B:112 , LYS B:123 , ILE B:322 , HOH B:401 , HOH B:426 , HOH B:456 , HOH B:468	BINDING SITE FOR RESIDUE GOL B 350
28	DC1	SOFTWARE	ASP B:87 , LYS B:123 , HIS B:126 , EDO B:341 , HOH B:476 , HOH B:579	BINDING SITE FOR RESIDUE GOL B 351
29	DC2	SOFTWARE	GLU B:159 , ASN B:184 , VAL B:185	BINDING SITE FOR RESIDUE GOL B 352
30	DC3	SOFTWARE	ASP B:29 , ASN B:47 , LYS B:144 , PHE B:191 , ALA B:237 , SER B:238 , GOL B:349 , HOH B:458 , HOH B:596	BINDING SITE FOR RESIDUE GOL B 353
31	DC4	SOFTWARE	HIS B:79 , GLU B:83 , ASP B:110 , ARG B:112 , HOH B:498	BINDING SITE FOR RESIDUE GOL B 354
32	DC5	SOFTWARE	LEU B:125 , ILE B:128 , LYS B:138 , HIS B:162 , HOH B:389 , HOH B:451 , HOH B:495 , HOH B:600	BINDING SITE FOR RESIDUE GOL B 355

(no "SS Bond" information available for 3CQ0)

(no "Cis Peptide Bond" information available for 3CQ0)

(no "SAP(SNP)/Variant" information available for 3CQ0)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSALDOLASE_1	PS01054	Transaldolase signature 1.	TAL2_YEAST	43-51	2	A:43-51 B:43-51
2	TRANSALDOLASE_2	PS00958	Transaldolase active site.	TAL2_YEAST	141-158	2	A:141-158 B:141-158

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSALDOLASE_1	PS01054	Transaldolase signature 1.	TAL2_YEAST	43-51	2	A:43-51 B:43-51
2	TRANSALDOLASE_2	PS00958	Transaldolase active site.	TAL2_YEAST	141-158	2	A:141-158 B:141-158

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSALDOLASE_1	PS01054	Transaldolase signature 1.	TAL2_YEAST	43-51	1	A:43-51 -
2	TRANSALDOLASE_2	PS00958	Transaldolase active site.	TAL2_YEAST	141-158	1	A:141-158 -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSALDOLASE_1	PS01054	Transaldolase signature 1.	TAL2_YEAST	43-51	1	- B:43-51
2	TRANSALDOLASE_2	PS00958	Transaldolase active site.	TAL2_YEAST	141-158	1	- B:141-158

(no "Exon" information available for 3CQ0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:325
 aligned with TAL2_YEAST | P53228 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:328
                                                                                                                                                                                                                                                                                                                                                           333      
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331 |      
           TAL2_YEAST    12 ATSSLEQLKKAGTHVVADSGDFEAISKYEPQDSTTNPSLILAASKLEKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVVPGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELEVKHGIHCNMTLLFSFTQAVACAEANVTLISPFVGRIMDFYKALSGKDYTAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLYESTDPIENKLNSESAKEEGVEKVSFINDEPHFRYVLNEDQMATEKLSDGIRKFSADIEALYKLVEEKM------   -
               SCOP domains d3cq0a_ A: automated matches                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 3cq0A00 A:12-339 Aldolase class I                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..eeeee..hhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhh.hhhhhhhhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee.hhhhhhhhhhh---......hhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhh...eeeeehhhhhhhhhh........hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------TRANSALDO-----------------------------------------------------------------------------------------TRANSALDOLASE_2   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cq0 A  12 ATSSLEQLKKAGTHVVADSGDFEAISKYEPQDSTTNPSLILAASKLEKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVVPGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELEVKHGIHCNMTLLFSFTQAVACAEANVTLISPFVGRIMDFYKAL---DYTAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLYESTDPIENKLNSESAKEEGVEKVSFINDEPHFRYVLNEDQMATEKLSDGIRKFSADIEALYKLVEEKMLEHHHH 339
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201|   |  211       221       231       241       251       261       271       281       291       301       311       321       331        
                                                                                                                                                                                                                        202 206

Chain B from PDB  Type:PROTEIN  Length:323
 aligned with TAL2_YEAST | P53228 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:328
                                                                                                                                                                                                                                                                                                                                                           333      
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331 |      
           TAL2_YEAST    12 ATSSLEQLKKAGTHVVADSGDFEAISKYEPQDSTTNPSLILAASKLEKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVVPGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELEVKHGIHCNMTLLFSFTQAVACAEANVTLISPFVGRIMDFYKALSGKDYTAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLYESTDPIENKLNSESAKEEGVEKVSFINDEPHFRYVLNEDQMATEKLSDGIRKFSADIEALYKLVEEKM------   -
               SCOP domains d3cq0b_ B: automated matches                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 3cq0B00 B:12-339 Aldolase class I                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..eeeee..hhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...eeee.hhhhh.hhhhhhhhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee.hhhhhhhhhh-----.....hhhhhhhhhhhhhhhhhh...eeee....hhhhhhhh....eeeeehhhhhhhhhh........hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------TRANSALDO-----------------------------------------------------------------------------------------TRANSALDOLASE_2   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cq0 B  12 ATSSLEQLKKAGTHVVADSGDFEAISKYEPQDSTTNPSLILAASKLEKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVVPGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELEVKHGIHCNMTLLFSFTQAVACAEANVTLISPFVGRIMDFYKA-----YTAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLYESTDPIENKLNSESAKEEGVEKVSFINDEPHFRYVLNEDQMATEKLSDGIRKFSADIEALYKLVEEKMLEHHHH 339
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201     | 211       221       231       241       251       261       271       281       291       301       311       321       331        
                                                                                                                                                                                                                       201   207

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: Class I aldolase (182)

Protein domain: automated matches (54)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (1)

1a	d3cq0a_	A:
1b	d3cq0b_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Baker's yeast (Saccharomyces cerevisiae) (49)

1a	3cq0B00	B:12-339
1b	3cq0A00	A:12-339

(no "Pfam Domain" information available for 3CQ0)

Asymmetric Unit(hide GO term definitions)

Chain A,B (TAL2_YEAST | P53228)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004801	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0034599	cellular response to oxidative stress	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
	GO:0001300	chronological cell aging	The process associated with progression of the cell from its inception to the end of its lifespan that occurs when the cell is in a non-dividing, or quiescent, state.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3cq0)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 33)

Sites (32, 32)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File