PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3CQ0
Biol. Unit 3
Info
Asym.Unit (124 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (61 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF TAL2_YEAST
Authors
:
H. Huang, L. Niu, M. Teng
Date
:
01 Apr 08 (Deposition) - 07 Apr 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Transaldolase, Alpha/Beta Barrel, Pentose Shunt, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Huang, H. Rong, X. Li, S. Tong, Z. Zhu, L. Niu, M. Teng
The Crystal Structure And Identification Of Nqm1/Ygr043C, A Transaldolase From Saccharomyces Cerevisiae
Proteins V. 73 1076 2008
[
close entry info
]
Hetero Components
(3, 16)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
3a: TETRAETHYLENE GLYCOL (PG4a)
3b: TETRAETHYLENE GLYCOL (PG4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
7
Ligand/Ion
GLYCEROL
3
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC7 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
HIS A:79 , TYR A:326 , ASP B:293 , HOH B:371
BINDING SITE FOR RESIDUE EDO A 344
02
AC7
SOFTWARE
THR A:148 , TRP A:149 , LEU A:301 , THR A:308 , HOH A:360 , HOH A:366 , THR B:148 , TRP B:149 , THR B:308 , HOH B:358
BINDING SITE FOR RESIDUE PG4 A 346
03
BC1
SOFTWARE
SER A:289 , EDO B:348 , HOH B:567
BINDING SITE FOR RESIDUE EDO A 349
04
BC2
SOFTWARE
LYS B:88
BINDING SITE FOR RESIDUE EDO B 340
05
BC3
SOFTWARE
TYR B:70 , ASN B:84 , HIS B:126 , GOL B:351
BINDING SITE FOR RESIDUE EDO B 341
06
BC4
SOFTWARE
LYS B:118 , ALA B:119 , LYS B:122 , HOH B:476
BINDING SITE FOR RESIDUE EDO B 342
07
BC5
SOFTWARE
LYS B:20 , GLY B:23 , THR B:24 , HIS B:25 , HOH B:376
BINDING SITE FOR RESIDUE EDO B 343
08
BC6
SOFTWARE
LEU B:125 , HIS B:126 , HOH B:467 , HOH B:589
BINDING SITE FOR RESIDUE EDO B 345
09
BC7
SOFTWARE
THR B:95 , LYS B:99 , ALA B:134 , VAL B:136 , ARG B:140 , HOH B:572 , HOH B:593 , HOH B:594
BINDING SITE FOR RESIDUE PG4 B 346
10
BC8
SOFTWARE
HOH B:463
BINDING SITE FOR RESIDUE EDO B 347
11
BC9
SOFTWARE
EDO A:349 , GLU B:323 , HOH B:603
BINDING SITE FOR RESIDUE EDO B 348
12
CC8
SOFTWARE
ARG B:194 , SER B:238 , ARG B:240 , GOL B:353
BINDING SITE FOR RESIDUE GOL B 349
13
CC9
SOFTWARE
ASP B:87 , LEU B:90 , ASP B:110 , ARG B:112 , LYS B:123 , ILE B:322 , HOH B:401 , HOH B:426 , HOH B:456 , HOH B:468
BINDING SITE FOR RESIDUE GOL B 350
14
DC1
SOFTWARE
ASP B:87 , LYS B:123 , HIS B:126 , EDO B:341 , HOH B:476 , HOH B:579
BINDING SITE FOR RESIDUE GOL B 351
15
DC2
SOFTWARE
GLU B:159 , ASN B:184 , VAL B:185
BINDING SITE FOR RESIDUE GOL B 352
16
DC3
SOFTWARE
ASP B:29 , ASN B:47 , LYS B:144 , PHE B:191 , ALA B:237 , SER B:238 , GOL B:349 , HOH B:458 , HOH B:596
BINDING SITE FOR RESIDUE GOL B 353
17
DC4
SOFTWARE
HIS B:79 , GLU B:83 , ASP B:110 , ARG B:112 , HOH B:498
BINDING SITE FOR RESIDUE GOL B 354
18
DC5
SOFTWARE
LEU B:125 , ILE B:128 , LYS B:138 , HIS B:162 , HOH B:389 , HOH B:451 , HOH B:495 , HOH B:600
BINDING SITE FOR RESIDUE GOL B 355
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: TRANSALDOLASE_1 (B:43-51)
2: TRANSALDOLASE_2 (B:141-158)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSALDOLASE_1
PS01054
Transaldolase signature 1.
TAL2_YEAST
43-51
1
-
B:43-51
2
TRANSALDOLASE_2
PS00958
Transaldolase active site.
TAL2_YEAST
141-158
1
-
B:141-158
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3cq0a_ (A:)
1b: SCOP_d3cq0b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
automated matches
(54)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d3cq0a_
A:
1b
d3cq0b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3cq0B00 (B:12-339)
1b: CATH_3cq0A00 (A:12-339)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Baker's yeast (Saccharomyces cerevisiae)
(49)
1a
3cq0B00
B:12-339
1b
3cq0A00
A:12-339
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (124 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (61 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3CQ0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
