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3CQ0
Biol. Unit 1
Info
Asym.Unit (124 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TAL2_YEAST
Authors
:
H. Huang, L. Niu, M. Teng
Date
:
01 Apr 08 (Deposition) - 07 Apr 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Transaldolase, Alpha/Beta Barrel, Pentose Shunt, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Huang, H. Rong, X. Li, S. Tong, Z. Zhu, L. Niu, M. Teng
The Crystal Structure And Identification Of Nqm1/Ygr043C, A Transaldolase From Saccharomyces Cerevisiae
Proteins V. 73 1076 2008
[
close entry info
]
Hetero Components
(3, 33)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
3a: TETRAETHYLENE GLYCOL (PG4a)
3b: TETRAETHYLENE GLYCOL (PG4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
14
Ligand/Ion
GLYCEROL
3
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:121 , LYS A:122 , GLU A:157 , LYS A:161 , HIS A:162 , HOH A:472
BINDING SITE FOR RESIDUE EDO A 340
02
AC2
SOFTWARE
ASN A:184 , VAL A:185 , HOH A:542
BINDING SITE FOR RESIDUE EDO A 341
03
AC3
SOFTWARE
LYS A:20 , GLU A:40 , GLN A:42 , HOH A:475 , HOH A:635
BINDING SITE FOR RESIDUE EDO A 342
04
AC4
SOFTWARE
TYR A:70 , HIS A:74 , ASN A:84 , HIS A:126 , HOH A:650
BINDING SITE FOR RESIDUE EDO A 343
05
AC5
SOFTWARE
HIS A:79 , TYR A:326 , ASP B:293 , HOH B:371
BINDING SITE FOR RESIDUE EDO A 344
06
AC6
SOFTWARE
LEU A:98 , LYS A:99 , VAL A:100 , VAL A:101 , PRO A:102 , ARG A:140
BINDING SITE FOR RESIDUE EDO A 345
07
AC7
SOFTWARE
THR A:148 , TRP A:149 , LEU A:301 , THR A:308 , HOH A:360 , HOH A:366 , THR B:148 , TRP B:149 , THR B:308 , HOH B:358
BINDING SITE FOR RESIDUE PG4 A 346
08
AC8
SOFTWARE
ARG A:227 , LYS A:281 , GLU A:282 , HOH A:588
BINDING SITE FOR RESIDUE EDO A 347
09
AC9
SOFTWARE
HOH A:420 , HOH A:429 , HOH A:589
BINDING SITE FOR RESIDUE EDO A 348
10
BC1
SOFTWARE
SER A:289 , EDO B:348 , HOH B:567
BINDING SITE FOR RESIDUE EDO A 349
11
BC2
SOFTWARE
LYS B:88
BINDING SITE FOR RESIDUE EDO B 340
12
BC3
SOFTWARE
TYR B:70 , ASN B:84 , HIS B:126 , GOL B:351
BINDING SITE FOR RESIDUE EDO B 341
13
BC4
SOFTWARE
LYS B:118 , ALA B:119 , LYS B:122 , HOH B:476
BINDING SITE FOR RESIDUE EDO B 342
14
BC5
SOFTWARE
LYS B:20 , GLY B:23 , THR B:24 , HIS B:25 , HOH B:376
BINDING SITE FOR RESIDUE EDO B 343
15
BC6
SOFTWARE
LEU B:125 , HIS B:126 , HOH B:467 , HOH B:589
BINDING SITE FOR RESIDUE EDO B 345
16
BC7
SOFTWARE
THR B:95 , LYS B:99 , ALA B:134 , VAL B:136 , ARG B:140 , HOH B:572 , HOH B:593 , HOH B:594
BINDING SITE FOR RESIDUE PG4 B 346
17
BC8
SOFTWARE
HOH B:463
BINDING SITE FOR RESIDUE EDO B 347
18
BC9
SOFTWARE
EDO A:349 , GLU B:323 , HOH B:603
BINDING SITE FOR RESIDUE EDO B 348
19
CC1
SOFTWARE
LYS A:20 , THR A:24 , HIS A:25 , HOH A:371 , HOH A:621 , HOH A:622 , HOH A:635
BINDING SITE FOR RESIDUE GOL A 350
20
CC2
SOFTWARE
MET A:86 , ASP A:87 , LEU A:90 , ASP A:110 , ARG A:112 , LYS A:123 , ILE A:322 , HOH A:372 , HOH A:393 , HOH A:411 , HOH A:643
BINDING SITE FOR RESIDUE GOL A 351
21
CC3
SOFTWARE
HIS A:79 , GLU A:83 , ASP A:110 , ARG A:112 , LEU A:113 , HOH A:521
BINDING SITE FOR RESIDUE GOL A 352
22
CC4
SOFTWARE
HIS A:228 , GLY A:229 , TYR A:230 , LYS A:287
BINDING SITE FOR RESIDUE GOL A 353
23
CC5
SOFTWARE
ASP A:29 , ASN A:47 , LYS A:144 , PHE A:191 , ALA A:237 , SER A:238 , THR A:255 , HOH A:398 , HOH A:529 , HOH A:554
BINDING SITE FOR RESIDUE GOL A 354
24
CC6
SOFTWARE
GLU A:283 , HOH A:647 , HOH A:648
BINDING SITE FOR RESIDUE GOL A 355
25
CC7
SOFTWARE
SER A:319 , ALA A:320 , GLU A:323 , HOH A:380 , HOH A:439
BINDING SITE FOR RESIDUE GOL A 356
26
CC8
SOFTWARE
ARG B:194 , SER B:238 , ARG B:240 , GOL B:353
BINDING SITE FOR RESIDUE GOL B 349
27
CC9
SOFTWARE
ASP B:87 , LEU B:90 , ASP B:110 , ARG B:112 , LYS B:123 , ILE B:322 , HOH B:401 , HOH B:426 , HOH B:456 , HOH B:468
BINDING SITE FOR RESIDUE GOL B 350
28
DC1
SOFTWARE
ASP B:87 , LYS B:123 , HIS B:126 , EDO B:341 , HOH B:476 , HOH B:579
BINDING SITE FOR RESIDUE GOL B 351
29
DC2
SOFTWARE
GLU B:159 , ASN B:184 , VAL B:185
BINDING SITE FOR RESIDUE GOL B 352
30
DC3
SOFTWARE
ASP B:29 , ASN B:47 , LYS B:144 , PHE B:191 , ALA B:237 , SER B:238 , GOL B:349 , HOH B:458 , HOH B:596
BINDING SITE FOR RESIDUE GOL B 353
31
DC4
SOFTWARE
HIS B:79 , GLU B:83 , ASP B:110 , ARG B:112 , HOH B:498
BINDING SITE FOR RESIDUE GOL B 354
32
DC5
SOFTWARE
LEU B:125 , ILE B:128 , LYS B:138 , HIS B:162 , HOH B:389 , HOH B:451 , HOH B:495 , HOH B:600
BINDING SITE FOR RESIDUE GOL B 355
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TRANSALDOLASE_1 (A:43-51,B:43-51)
2: TRANSALDOLASE_2 (A:141-158,B:141-158)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSALDOLASE_1
PS01054
Transaldolase signature 1.
TAL2_YEAST
43-51
2
A:43-51
B:43-51
2
TRANSALDOLASE_2
PS00958
Transaldolase active site.
TAL2_YEAST
141-158
2
A:141-158
B:141-158
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3cq0a_ (A:)
1b: SCOP_d3cq0b_ (B:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
automated matches
(54)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d3cq0a_
A:
1b
d3cq0b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3cq0B00 (B:12-339)
1b: CATH_3cq0A00 (A:12-339)
View:
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Classes
(
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(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Baker's yeast (Saccharomyces cerevisiae)
(49)
1a
3cq0B00
B:12-339
1b
3cq0A00
A:12-339
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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