3CEV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   ARGINASE FROM BACILLUS CALDEVELOX, COMPLEXED WITH L-ARGININE

Authors :   M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker

Date :   15 Mar 99 (Deposition) - 16 Apr 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (2x)
Biol. Unit 2: D,E,F  (1x)
Biol. Unit 3: D,E,F  (2x)

Keywords :   Enzyme, Hydrolase, Arginine Hydrolysis, Nitrogen Metabolism, Manganese Metalloenzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Crystal Structures Of Bacillus Caldovelox Arginase In Complex With Substrate And Inhibitors Reveal New Insights Into Activation, Inhibition And Catalysis In The Arginase Superfamily.
Structure Fold. Des. V. 7 435 1999
PubMed-ID: 10196128 | Reference-DOI: 10.1016/S0969-2126(99)80056-2

Molecule 1 - PROTEIN (ARGINASE)
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.5.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cell Line	:	BL21
	Expression System Taxid	:	562
	Organism Scientific	:	BACILLUS CALDOVELOX
	Organism Taxid	:	33931
	Other Details	:	STRUCTURE CONTAINS TWO ARGININE LIGANDS BOUND TO EACH MOLECULE. ONE (LABELLED R 407 - R 412) IS BOUND IN THE ACTIVE SITE, COORDINATED TO THE SINGLE MN. THE OTHER (LABELLED R 401 - R 406) IS AT AN EXTERNAL SITE, BETWEEN SUBUNITS. EACH MOLECULE HAS JUST A SINGLE MN ION AT THE ACTIVE SITE (MNA) INSTEAD OF THE USUAL TWO. THE SECOND WAS REMOVED BY TREATMENT WITH EDTA.
	Other Details - Source	:	BACILLUS SPECIES DSM 411
	Strain	:	BACILLUS SPECIES DSM 411

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (2x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F
Biological Unit 3 (2x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 18)

No.	Name	Count	Type	Full Name
1	ARG	12	Mod. Amino Acid	ARGININE
2	MN	6	Ligand/Ion	MANGANESE (II) ION

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	ARG	12	Mod. Amino Acid	ARGININE
2	MN	-1	Ligand/Ion	MANGANESE (II) ION

Biological Unit 2 (1, 6)

No.	Name	Count	Type	Full Name
1	ARG	6	Mod. Amino Acid	ARGININE
2	MN	-1	Ligand/Ion	MANGANESE (II) ION

Biological Unit 3 (1, 12)

No.	Name	Count	Type	Full Name
1	ARG	12	Mod. Amino Acid	ARGININE
2	MN	-1	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226 , ARG A:407 , HOH A:408	BINDING SITE FOR RESIDUE MN A 300
02	AC2	SOFTWARE	HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226 , ARG B:408 , HOH B:409	BINDING SITE FOR RESIDUE MN B 300
03	AC3	SOFTWARE	HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226 , ARG C:409 , HOH C:410	BINDING SITE FOR RESIDUE MN C 300
04	AC4	SOFTWARE	HIS D:99 , ASP D:122 , ASP D:126 , ASP D:226 , ARG D:410 , HOH D:411	BINDING SITE FOR RESIDUE MN D 300
05	AC5	SOFTWARE	HIS E:99 , ASP E:122 , ASP E:126 , ASP E:226 , ARG E:411 , HOH E:412	BINDING SITE FOR RESIDUE MN E 300
06	AC6	SOFTWARE	HIS F:99 , ASP F:122 , ASP F:126 , ASP F:226 , ARG F:412 , HOH F:413	BINDING SITE FOR RESIDUE MN F 300
07	AC7	SOFTWARE	HIS A:252 , GLU A:256 , SER A:292 , GLU A:296 , LEU A:298 , HOH A:445 , HOH A:499 , MET B:195 , HIS B:196 , ASP B:199 , HOH B:492	BINDING SITE FOR RESIDUE ARG A 401
08	AC8	SOFTWARE	HIS B:252 , GLU B:256 , SER B:292 , GLU B:296 , LEU B:298 , HOH B:448 , HOH B:505 , MET C:195 , HIS C:196 , ASP C:199 , HOH C:427	BINDING SITE FOR RESIDUE ARG B 402
09	AC9	SOFTWARE	MET A:195 , HIS A:196 , ASP A:199 , HOH A:424 , HOH A:489 , HIS C:252 , GLU C:256 , SER C:292 , GLU C:296 , LEU C:298 , HOH C:447	BINDING SITE FOR RESIDUE ARG C 403
10	BC1	SOFTWARE	HIS D:252 , GLU D:256 , SER D:292 , GLU D:296 , LEU D:298 , HOH D:447 , HOH D:500 , HIS E:196 , ASP E:199 , HOH E:495	BINDING SITE FOR RESIDUE ARG D 404
11	BC2	SOFTWARE	HIS E:252 , GLU E:256 , SER E:292 , GLU E:296 , LEU E:298 , HOH E:452 , HOH E:507 , MET F:195 , HIS F:196 , ASP F:199 , HOH F:432	BINDING SITE FOR RESIDUE ARG E 405
12	BC3	SOFTWARE	MET D:195 , HIS D:196 , ASP D:199 , HOH D:426 , HOH D:489 , HIS F:252 , GLU F:256 , SER F:292 , GLU F:296 , LEU F:298 , HOH F:453	BINDING SITE FOR RESIDUE ARG F 406
13	BC4	SOFTWARE	HIS A:99 , ASP A:126 , ASN A:128 , SER A:135 , HIS A:139 , ASP A:178 , GLU A:181 , ASP A:226 , ASP A:228 , THR A:240 , GLU A:271 , MN A:300 , HOH A:408 , HOH A:409 , HOH A:410 , HOH A:411 , HOH A:455 , HOH A:456	BINDING SITE FOR RESIDUE ARG A 407
14	BC5	SOFTWARE	HIS B:99 , HIS B:124 , ASP B:126 , ASN B:128 , SER B:135 , HIS B:139 , ASP B:178 , GLU B:181 , ASP B:226 , ASP B:228 , THR B:240 , GLU B:271 , MN B:300 , HOH B:409 , HOH B:414 , HOH B:415 , HOH B:416 , HOH B:456 , HOH B:457	BINDING SITE FOR RESIDUE ARG B 408
15	BC6	SOFTWARE	HIS C:99 , ASP C:126 , ASN C:128 , SER C:135 , HIS C:139 , ASP C:178 , GLU C:181 , ASP C:226 , ASP C:228 , THR C:240 , GLU C:271 , MN C:300 , HOH C:410 , HOH C:414 , HOH C:415 , HOH C:416 , HOH C:456 , HOH C:457	BINDING SITE FOR RESIDUE ARG C 409
16	BC7	SOFTWARE	HIS D:99 , HIS D:124 , ASP D:126 , ASN D:128 , SER D:135 , HIS D:139 , ASP D:178 , GLU D:181 , ASP D:226 , ASP D:228 , THR D:240 , GLU D:271 , MN D:300 , HOH D:411 , HOH D:412 , HOH D:413 , HOH D:414 , HOH D:434 , HOH D:457 , HOH D:458	BINDING SITE FOR RESIDUE ARG D 410
17	BC8	SOFTWARE	HIS E:99 , HIS E:124 , ASP E:126 , ASN E:128 , SER E:135 , HIS E:139 , ASP E:178 , GLU E:181 , ASP E:226 , ASP E:228 , THR E:240 , GLU E:271 , MN E:300 , HOH E:412 , HOH E:417 , HOH E:418 , HOH E:419 , HOH E:439 , HOH E:463	BINDING SITE FOR RESIDUE ARG E 411
18	BC9	SOFTWARE	HIS F:99 , HIS F:124 , ASP F:126 , ASN F:128 , SER F:135 , HIS F:139 , ASP F:178 , GLU F:181 , ASP F:226 , ASP F:228 , THR F:240 , GLU F:271 , MN F:300 , HOH F:413 , HOH F:419 , HOH F:420 , HOH F:421 , HOH F:440 , HOH F:462	BINDING SITE FOR RESIDUE ARG F 412
19	MNA	AUTHOR	MN A:300 , HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226	SITE COMPRISES ONE MN ATOM, MN A 300, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 7) NH2 AND WATER W1
20	MNB	AUTHOR	MN B:300 , HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226	SITE COMPRISES ONE MN ATOM, MN B 300, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 8) NH2, AND A WATER W2
21	MNC	AUTHOR	MN C:300 , HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226	SITE COMPRISES ONE MN ATOM, MN C 300, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 9) NH2 AND A WATER W3
22	MND	AUTHOR	MN D:300 , HIS D:99 , ASP D:122 , ASP D:126 , ASP D:226	SITE COMPRISES ONE MN ATOM, MN D 300, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 10) NH2 AND A WATER W4
23	MNE	AUTHOR	MN E:300 , HIS E:99 , ASP E:122 , ASP E:126 , ASP E:226	SITE COMPRISES ONE MN ATOM, MN E 200, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 11) NH2 AND A WATER W5
24	MNF	AUTHOR	MN F:300 , HIS F:99 , ASP F:122 , ASP F:126 , ASP F:226	SITE COMPRISES ONE MN ATOM, MN F 200, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 12) NH2 AND A WATER W6

(no "SS Bond" information available for 3CEV)

Asymmetric Unit

No.	Residues
1	Gly A:96	-	Gly A:97
2	Ser A:161	-	Pro A:162
3	Gly B:96	-	Gly B:97
4	Ser B:161	-	Pro B:162
5	Gly C:96	-	Gly C:97
6	Ser C:161	-	Pro C:162
7	Gly D:96	-	Gly D:97
8	Ser D:161	-	Pro D:162
9	Gly E:96	-	Gly E:97
10	Ser E:161	-	Pro E:162
11	Gly F:96	-	Gly F:97
12	Ser F:161	-	Pro F:162

(no "SAP(SNP)/Variant" information available for 3CEV)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	6	A:224-245 B:224-245 C:224-245 D:224-245 E:224-245 F:224-245

Biological Unit 1 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	6	A:224-245 B:224-245 C:224-245 - - -

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	3	- - - D:224-245 E:224-245 F:224-245

Biological Unit 3 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	6	- - - D:224-245 E:224-245 F:224-245

(no "Exon" information available for 3CEV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d3ceva_ A: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 3cevA00 A:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhh....eee......................hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhh.....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cev A   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain B from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d3cevb_ B: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 3cevB00 B:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhhh...eee......................hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhh.....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cev B   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain C from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d3cevc_ C: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 3cevC00 C:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhhh...eee...........hhh........hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhh.....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cev C   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain D from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d3cevd_ D: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 3cevD00 D:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhhh...eee...........hhh........hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cev D   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain E from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d3ceve_ E: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 3cevE00 E:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhhh...eee......................hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cev E   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain F from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d3cevf_ F: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 3cevF00 F:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhh.....eee......................hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhh.....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cev F   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Arginase/deacetylase (138)

Superfamily: Arginase/deacetylase (138)

Family: Arginase-like amidino hydrolases (97)

Protein domain: Arginase (73)

Bacillus caldovelox [TaxId: 33931] (5)

1a	d3ceva_	A:
1b	d3ceve_	E:
1c	d3cevf_	F:
1d	d3cevb_	B:
1e	d3cevc_	C:
1f	d3cevd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Arginase; Chain A (84)

Homologous Superfamily: [code=3.40.800.10, no name defined] (63)

Bacillus caldovelox. Organism_taxid: 33931. Strain: bacillus species dsm 411. (5)

1a	3cevA00	A:2-299
1b	3cevB00	B:2-299
1c	3cevC00	C:2-299
1d	3cevD00	D:2-299
1e	3cevE00	E:2-299
1f	3cevF00	F:2-299

(no "Pfam Domain" information available for 3CEV)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (ARGI_BACCD | P53608)

molecular function
	GO:0004053	arginase activity	Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006525	arginine metabolic process	The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
	GO:0000050	urea cycle	The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate.

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		Gly F:96 - Gly F:97	[ RasMol ]
		Ser A:161 - Pro A:162	[ RasMol ]
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	3cev
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	ARGI_BACCD \| P53608	:	1cev 2cev 4cev 5cev

(no "Related Entries Specified in the PDB File" available for 3CEV)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 18)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (12, 12)

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Exons (0, 0)

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