4CEV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   ARGINASE FROM BACILLUS CALDEVELOX, L-ORNITHINE COMPLEX

Authors :   M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker

Date :   15 Mar 99 (Deposition) - 16 Apr 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D  (2x)
Biol. Unit 2: D,E,F  (2x)

Keywords :   Enzyme, Hydrolase, Arginine Hydrolysis, Nitrogen Metabolism, Manganese Metalloenzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Crystal Structures Of Bacillus Caldovelox Arginase In Complex With Substrate And Inhibitors Reveal New Insights Into Activation, Inhibition And Catalysis In The Arginase Superfamily.
Structure Fold. Des. V. 7 435 1999
PubMed-ID: 10196128 | Reference-DOI: 10.1016/S0969-2126(99)80056-2

Molecule 1 - PROTEIN (ARGINASE)
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.5.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cell Line	:	BL21
	Expression System Taxid	:	562
	Organism Scientific	:	BACILLUS CALDOVELOX
	Organism Taxid	:	33931
	Other Details	:	BACILLUS SPECIES DSM 411
	Strain	:	BACILLUS SPECIES DSM 411

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (2x)	:	A	B	C	D
Biological Unit 2 (2x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 24)

No.	Name	Count	Type	Full Name
1	GAI	6	Ligand/Ion	GUANIDINE
2	MN	12	Ligand/Ion	MANGANESE (II) ION
3	ORN	6	Ligand/Ion	L-ORNITHINE

Biological Unit 1 (2, 20)

No.	Name	Count	Type	Full Name
1	GAI	8	Ligand/Ion	GUANIDINE
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	ORN	12	Ligand/Ion	L-ORNITHINE

Biological Unit 2 (1, 6)

No.	Name	Count	Type	Full Name
1	GAI	6	Ligand/Ion	GUANIDINE
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	ORN	-1	Ligand/Ion	L-ORNITHINE

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226 , MN A:301 , ORN A:401 , HOH A:408	BINDING SITE FOR RESIDUE MN A 300
02	AC2	SOFTWARE	ASP A:122 , HIS A:124 , ASP A:226 , ASP A:228 , MN A:300 , HOH A:408	BINDING SITE FOR RESIDUE MN A 301
03	AC3	SOFTWARE	HOH A:409 , HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226 , MN B:301	BINDING SITE FOR RESIDUE MN B 300
04	AC4	SOFTWARE	HOH A:409 , ASP B:122 , HIS B:124 , ASP B:226 , ASP B:228 , MN B:300	BINDING SITE FOR RESIDUE MN B 301
05	AC5	SOFTWARE	HOH A:410 , HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226 , MN C:301	BINDING SITE FOR RESIDUE MN C 300
06	AC6	SOFTWARE	HOH A:410 , ASP C:122 , HIS C:124 , ASP C:226 , ASP C:228 , MN C:300	BINDING SITE FOR RESIDUE MN C 301
07	AC7	SOFTWARE	ORN A:404 , HOH A:411 , HIS D:99 , ASP D:122 , ASP D:126 , ASP D:226 , MN D:301	BINDING SITE FOR RESIDUE MN D 300
08	AC8	SOFTWARE	HOH A:411 , ASP D:122 , HIS D:124 , ASP D:226 , ASP D:228 , MN D:300	BINDING SITE FOR RESIDUE MN D 301
09	AC9	SOFTWARE	HOH A:412 , HIS E:99 , ASP E:122 , ASP E:126 , ASP E:226 , MN E:301	BINDING SITE FOR RESIDUE MN E 300
10	BC1	SOFTWARE	HOH A:412 , ASP E:122 , HIS E:124 , ASP E:226 , ASP E:228 , MN E:300	BINDING SITE FOR RESIDUE MN E 301
11	BC2	SOFTWARE	HIS F:99 , ASP F:122 , ASP F:126 , ASP F:226 , MN F:301 , HOH F:413	BINDING SITE FOR RESIDUE MN F 300
12	BC3	SOFTWARE	ASP F:122 , HIS F:124 , ASP F:226 , ASP F:228 , MN F:300 , HOH F:413	BINDING SITE FOR RESIDUE MN F 301
13	BC4	SOFTWARE	ASP A:126 , ASN A:128 , SER A:135 , HIS A:139 , GLY A:140 , ASP A:178 , MN A:300 , HOH A:408 , HOH A:413 , HOH A:417	BINDING SITE FOR RESIDUE ORN A 401
14	BC5	SOFTWARE	HOH A:409 , HOH A:438 , ASP B:126 , ASN B:128 , SER B:135 , HIS B:139 , GLY B:140 , ASP B:178 , GLU B:181 , HOH B:409 , HOH B:412	BINDING SITE FOR RESIDUE ORN A 402
15	BC6	SOFTWARE	HOH A:410 , HOH A:440 , HOH A:441 , HIS C:124 , ASP C:126 , ASN C:128 , SER C:135 , HIS C:139 , ASP C:178 , GLU C:181 , HOH C:411	BINDING SITE FOR RESIDUE ORN A 403
16	BC7	SOFTWARE	HOH A:411 , HOH A:442 , HIS D:124 , ASP D:126 , ASN D:128 , SER D:135 , HIS D:139 , ASP D:178 , GLU D:181 , MN D:300 , HOH D:411 , HOH D:412	BINDING SITE FOR RESIDUE ORN A 404
17	BC8	SOFTWARE	HOH A:412 , HOH A:443 , ASP E:126 , ASN E:128 , SER E:135 , HIS E:139 , GLY E:140 , ASP E:178 , GLU E:181 , HOH E:302 , HOH E:303 , HOH E:305	BINDING SITE FOR RESIDUE ORN A 405
18	BC9	SOFTWARE	HOH A:444 , HIS F:124 , ASP F:126 , ASN F:128 , SER F:135 , HIS F:139 , GLY F:140 , ASP F:178 , GLU F:181 , HOH F:413 , HOH F:414 , HOH F:415 , HOH F:416 , HOH F:418 , HOH F:438	BINDING SITE FOR RESIDUE ORN A 406
19	CC1	SOFTWARE	ARG A:249 , HIS A:252 , GLU A:256 , MET B:195 , HIS B:196 , ASP B:199	BINDING SITE FOR RESIDUE GAI A 407
20	CC2	SOFTWARE	ARG B:249 , HIS B:252 , GLU B:256 , HIS C:196 , ASP C:199	BINDING SITE FOR RESIDUE GAI B 408
21	CC3	SOFTWARE	MET A:195 , ASP A:199 , HIS C:252 , GLU C:256	BINDING SITE FOR RESIDUE GAI C 409
22	CC4	SOFTWARE	HIS D:252 , GLU D:256 , ASP E:199	BINDING SITE FOR RESIDUE GAI D 410
23	CC5	SOFTWARE	HIS E:252 , GLU E:256 , MET F:195 , HIS F:196 , ASP F:199	BINDING SITE FOR RESIDUE GAI F 411
24	CC6	SOFTWARE	MET D:195 , HIS D:196 , ASP D:199 , HIS F:252 , GLU F:256	BINDING SITE FOR RESIDUE GAI F 412
25	MNA	AUTHOR	MN A:300 , MN A:301 , HIS A:99 , ASP A:122 , HIS A:124 , ASP A:126 , ASP A:226 , ASP A:228	SITE COMPRISES TWO MN ATOMS, MN A 300 AND MN A 301 MN A 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 1. MN A 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 1
26	MNB	AUTHOR	MN B:300 , MN B:301 , HIS B:99 , ASP B:122 , HIS B:124 , ASP B:126 , ASP B:226 , ASP B:228	SITE COMPRISES TWO MN ATOMS, MN B 300 AND MN B 301 MN B 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 2. MN B 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 2
27	MNC	AUTHOR	MN C:300 , MN C:301 , HIS C:99 , ASP C:122 , HIS C:124 , ASP C:126 , ASP C:226 , ASP C:228	SITE COMPRISES TWO MN ATOMS, MN C 300 AND MN C 301 MN C 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 3. MN C 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 3
28	MND	AUTHOR	MN D:300 , MN D:301 , HIS D:99 , ASP D:122 , HIS D:124 , ASP D:126 , ASP D:226 , ASP D:228	SITE COMPRISES TWO MN ATOMS, MN D 300 AND MN D 301 MN D 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 4. MN D 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 4
29	MNE	AUTHOR	MN E:300 , MN E:301 , HIS E:99 , ASP E:122 , HIS E:124 , ASP E:126 , ASP E:226 , ASP E:228	SITE COMPRISES TWO MN ATOMS, MN E 300 AND MN E 301 MN E 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 5. MN E 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 5
30	MNF	AUTHOR	MN F:300 , MN F:301 , HIS F:99 , ASP F:122 , HIS F:124 , ASP F:126 , ASP F:226 , ASP F:228	SITE COMPRISES TWO MN ATOMS, MN F 300 AND MN F 301 MN E 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, AND A BRIDGING WATER HOH 6. MN E 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, ASP 228 OD2 AND THE BRIDGING WATER HOH 6

(no "SS Bond" information available for 4CEV)

Asymmetric Unit

No.	Residues
1	Gly A:96	-	Gly A:97
2	Ser A:161	-	Pro A:162
3	Gly B:96	-	Gly B:97
4	Ser B:161	-	Pro B:162
5	Gly C:96	-	Gly C:97
6	Ser C:161	-	Pro C:162
7	Gly D:96	-	Gly D:97
8	Ser D:161	-	Pro D:162
9	Gly E:96	-	Gly E:97
10	Ser E:161	-	Pro E:162
11	Gly F:96	-	Gly F:97
12	Ser F:161	-	Pro F:162

(no "SAP(SNP)/Variant" information available for 4CEV)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	6	A:224-245 B:224-245 C:224-245 D:224-245 E:224-245 F:224-245

Biological Unit 1 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	8	A:224-245 B:224-245 C:224-245 D:224-245 - -

Biological Unit 2 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	6	- - - D:224-245 E:224-245 F:224-245

(no "Exon" information available for 4CEV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d4ceva_ A: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 4cevA00 A:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhh....eee......................hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhh.....hhhh..........hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cev A   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain B from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d4cevb_ B: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 4cevB00 B:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhhh...eee......................hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhh.....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cev B   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain C from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d4cevc_ C: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 4cevC00 C:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhhh...eee...........hhh........hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhh.....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cev C   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain D from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d4cevd_ D: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 4cevD00 D:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhh....eee...........hhh........hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cev D   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain E from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d4ceve_ E: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 4cevE00 E:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhhhh...eee...........hhh........hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cev E   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain F from PDB  Type:PROTEIN  Length:298
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:298
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        
           ARGI_BACCD     2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d4cevf_ F: Arginase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 4cevF00 F:2-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...........hhhhhhhhhh..hhhhhh.....eee...........hhh........hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeee................hhh.hhhhh.....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cev F   2 KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Arginase/deacetylase (138)

Superfamily: Arginase/deacetylase (138)

Family: Arginase-like amidino hydrolases (97)

Protein domain: Arginase (73)

Bacillus caldovelox [TaxId: 33931] (5)

1a	d4ceva_	A:
1b	d4cevb_	B:
1c	d4cevc_	C:
1d	d4cevd_	D:
1e	d4ceve_	E:
1f	d4cevf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Arginase; Chain A (84)

Homologous Superfamily: [code=3.40.800.10, no name defined] (63)

Bacillus caldovelox. Organism_taxid: 33931. Strain: bacillus species dsm 411. (5)

1a	4cevA00	A:2-299
1b	4cevB00	B:2-299
1c	4cevC00	C:2-299
1d	4cevD00	D:2-299
1e	4cevE00	E:2-299
1f	4cevF00	F:2-299

(no "Pfam Domain" information available for 4CEV)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (ARGI_BACCD | P53608)

molecular function
	GO:0004053	arginase activity	Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006525	arginine metabolic process	The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
	GO:0000050	urea cycle	The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate.

Asymmetric Unit
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	Cis Peptide Bonds
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		Gly F:96 - Gly F:97	[ RasMol ]
		Ser A:161 - Pro A:162	[ RasMol ]
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	4cev
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	ARGI_BACCD \| P53608	:	1cev 2cev 3cev 5cev

(no "Related Entries Specified in the PDB File" available for 4CEV)

Description

Compounds

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Ligands, Modified Residues, Ions (3, 24)

Sites (30, 30)

SS Bonds (0, 0)

Cis Peptide Bonds (12, 12)

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