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3CEV
Biol. Unit 1
Info
Asym.Unit (297 KB)
Biol.Unit 1 (290 KB)
Biol.Unit 2 (148 KB)
Biol.Unit 3 (291 KB)
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(1)
Title
:
ARGINASE FROM BACILLUS CALDEVELOX, COMPLEXED WITH L-ARGININE
Authors
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Date
:
15 Mar 99 (Deposition) - 16 Apr 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (2x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: D,E,F (2x)
Keywords
:
Enzyme, Hydrolase, Arginine Hydrolysis, Nitrogen Metabolism, Manganese Metalloenzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Crystal Structures Of Bacillus Caldovelox Arginase In Complex With Substrate And Inhibitors Reveal New Insights Into Activation, Inhibition And Catalysis In The Arginase Superfamily.
Structure Fold. Des. V. 7 435 1999
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: ARGININE (ARGa)
1b: ARGININE (ARGb)
1c: ARGININE (ARGc)
1d: ARGININE (ARGd)
1e: ARGININE (ARGe)
1f: ARGININE (ARGf)
1g: ARGININE (ARGg)
1h: ARGININE (ARGh)
1i: ARGININE (ARGi)
1j: ARGININE (ARGj)
1k: ARGININE (ARGk)
1l: ARGININE (ARGl)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ARG
12
Mod. Amino Acid
ARGININE
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: MNA (AUTHOR)
11: MNB (AUTHOR)
12: MNC (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226 , ARG A:407 , HOH A:408
BINDING SITE FOR RESIDUE MN A 300
02
AC2
SOFTWARE
HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226 , ARG B:408 , HOH B:409
BINDING SITE FOR RESIDUE MN B 300
03
AC3
SOFTWARE
HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226 , ARG C:409 , HOH C:410
BINDING SITE FOR RESIDUE MN C 300
04
AC7
SOFTWARE
HIS A:252 , GLU A:256 , SER A:292 , GLU A:296 , LEU A:298 , HOH A:445 , HOH A:499 , MET B:195 , HIS B:196 , ASP B:199 , HOH B:492
BINDING SITE FOR RESIDUE ARG A 401
05
AC8
SOFTWARE
HIS B:252 , GLU B:256 , SER B:292 , GLU B:296 , LEU B:298 , HOH B:448 , HOH B:505 , MET C:195 , HIS C:196 , ASP C:199 , HOH C:427
BINDING SITE FOR RESIDUE ARG B 402
06
AC9
SOFTWARE
MET A:195 , HIS A:196 , ASP A:199 , HOH A:424 , HOH A:489 , HIS C:252 , GLU C:256 , SER C:292 , GLU C:296 , LEU C:298 , HOH C:447
BINDING SITE FOR RESIDUE ARG C 403
07
BC4
SOFTWARE
HIS A:99 , ASP A:126 , ASN A:128 , SER A:135 , HIS A:139 , ASP A:178 , GLU A:181 , ASP A:226 , ASP A:228 , THR A:240 , GLU A:271 , MN A:300 , HOH A:408 , HOH A:409 , HOH A:410 , HOH A:411 , HOH A:455 , HOH A:456
BINDING SITE FOR RESIDUE ARG A 407
08
BC5
SOFTWARE
HIS B:99 , HIS B:124 , ASP B:126 , ASN B:128 , SER B:135 , HIS B:139 , ASP B:178 , GLU B:181 , ASP B:226 , ASP B:228 , THR B:240 , GLU B:271 , MN B:300 , HOH B:409 , HOH B:414 , HOH B:415 , HOH B:416 , HOH B:456 , HOH B:457
BINDING SITE FOR RESIDUE ARG B 408
09
BC6
SOFTWARE
HIS C:99 , ASP C:126 , ASN C:128 , SER C:135 , HIS C:139 , ASP C:178 , GLU C:181 , ASP C:226 , ASP C:228 , THR C:240 , GLU C:271 , MN C:300 , HOH C:410 , HOH C:414 , HOH C:415 , HOH C:416 , HOH C:456 , HOH C:457
BINDING SITE FOR RESIDUE ARG C 409
10
MNA
AUTHOR
MN A:300 , HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226
SITE COMPRISES ONE MN ATOM, MN A 300, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 7) NH2 AND WATER W1
11
MNB
AUTHOR
MN B:300 , HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226
SITE COMPRISES ONE MN ATOM, MN B 300, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 8) NH2, AND A WATER W2
12
MNC
AUTHOR
MN C:300 , HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226
SITE COMPRISES ONE MN ATOM, MN C 300, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 9) NH2 AND A WATER W3
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:224-245,B:224-245,C:224-245)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI_BACCD
224-245
6
A:224-245
B:224-245
C:224-245
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3ceva_ (A:)
1b: SCOP_d3ceve_ (E:)
1c: SCOP_d3cevf_ (F:)
1d: SCOP_d3cevb_ (B:)
1e: SCOP_d3cevc_ (C:)
1f: SCOP_d3cevd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Bacillus caldovelox [TaxId: 33931]
(5)
1a
d3ceva_
A:
1b
d3ceve_
E:
1c
d3cevf_
F:
1d
d3cevb_
B:
1e
d3cevc_
C:
1f
d3cevd_
D:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3cevA00 (A:2-299)
1b: CATH_3cevB00 (B:2-299)
1c: CATH_3cevC00 (C:2-299)
1d: CATH_3cevD00 (D:2-299)
1e: CATH_3cevE00 (E:2-299)
1f: CATH_3cevF00 (F:2-299)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Bacillus caldovelox. Organism_taxid: 33931. Strain: bacillus species dsm 411.
(5)
1a
3cevA00
A:2-299
1b
3cevB00
B:2-299
1c
3cevC00
C:2-299
1d
3cevD00
D:2-299
1e
3cevE00
E:2-299
1f
3cevF00
F:2-299
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Pfam Domains
(0, 0)
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Asym.Unit (297 KB)
Header - Asym.Unit
Biol.Unit 1 (290 KB)
Header - Biol.Unit 1
Biol.Unit 2 (148 KB)
Header - Biol.Unit 2
Biol.Unit 3 (291 KB)
Header - Biol.Unit 3
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