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3CEV
Biol. Unit 2
Info
Asym.Unit (297 KB)
Biol.Unit 1 (290 KB)
Biol.Unit 2 (148 KB)
Biol.Unit 3 (291 KB)
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(1)
Title
:
ARGINASE FROM BACILLUS CALDEVELOX, COMPLEXED WITH L-ARGININE
Authors
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Date
:
15 Mar 99 (Deposition) - 16 Apr 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (2x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: D,E,F (2x)
Keywords
:
Enzyme, Hydrolase, Arginine Hydrolysis, Nitrogen Metabolism, Manganese Metalloenzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Crystal Structures Of Bacillus Caldovelox Arginase In Complex With Substrate And Inhibitors Reveal New Insights Into Activation, Inhibition And Catalysis In The Arginase Superfamily.
Structure Fold. Des. V. 7 435 1999
[
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: ARGININE (ARGa)
1b: ARGININE (ARGb)
1c: ARGININE (ARGc)
1d: ARGININE (ARGd)
1e: ARGININE (ARGe)
1f: ARGININE (ARGf)
1g: ARGININE (ARGg)
1h: ARGININE (ARGh)
1i: ARGININE (ARGi)
1j: ARGININE (ARGj)
1k: ARGININE (ARGk)
1l: ARGININE (ARGl)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ARG
6
Mod. Amino Acid
ARGININE
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: MND (AUTHOR)
11: MNE (AUTHOR)
12: MNF (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
HIS D:99 , ASP D:122 , ASP D:126 , ASP D:226 , ARG D:410 , HOH D:411
BINDING SITE FOR RESIDUE MN D 300
02
AC5
SOFTWARE
HIS E:99 , ASP E:122 , ASP E:126 , ASP E:226 , ARG E:411 , HOH E:412
BINDING SITE FOR RESIDUE MN E 300
03
AC6
SOFTWARE
HIS F:99 , ASP F:122 , ASP F:126 , ASP F:226 , ARG F:412 , HOH F:413
BINDING SITE FOR RESIDUE MN F 300
04
BC1
SOFTWARE
HIS D:252 , GLU D:256 , SER D:292 , GLU D:296 , LEU D:298 , HOH D:447 , HOH D:500 , HIS E:196 , ASP E:199 , HOH E:495
BINDING SITE FOR RESIDUE ARG D 404
05
BC2
SOFTWARE
HIS E:252 , GLU E:256 , SER E:292 , GLU E:296 , LEU E:298 , HOH E:452 , HOH E:507 , MET F:195 , HIS F:196 , ASP F:199 , HOH F:432
BINDING SITE FOR RESIDUE ARG E 405
06
BC3
SOFTWARE
MET D:195 , HIS D:196 , ASP D:199 , HOH D:426 , HOH D:489 , HIS F:252 , GLU F:256 , SER F:292 , GLU F:296 , LEU F:298 , HOH F:453
BINDING SITE FOR RESIDUE ARG F 406
07
BC7
SOFTWARE
HIS D:99 , HIS D:124 , ASP D:126 , ASN D:128 , SER D:135 , HIS D:139 , ASP D:178 , GLU D:181 , ASP D:226 , ASP D:228 , THR D:240 , GLU D:271 , MN D:300 , HOH D:411 , HOH D:412 , HOH D:413 , HOH D:414 , HOH D:434 , HOH D:457 , HOH D:458
BINDING SITE FOR RESIDUE ARG D 410
08
BC8
SOFTWARE
HIS E:99 , HIS E:124 , ASP E:126 , ASN E:128 , SER E:135 , HIS E:139 , ASP E:178 , GLU E:181 , ASP E:226 , ASP E:228 , THR E:240 , GLU E:271 , MN E:300 , HOH E:412 , HOH E:417 , HOH E:418 , HOH E:419 , HOH E:439 , HOH E:463
BINDING SITE FOR RESIDUE ARG E 411
09
BC9
SOFTWARE
HIS F:99 , HIS F:124 , ASP F:126 , ASN F:128 , SER F:135 , HIS F:139 , ASP F:178 , GLU F:181 , ASP F:226 , ASP F:228 , THR F:240 , GLU F:271 , MN F:300 , HOH F:413 , HOH F:419 , HOH F:420 , HOH F:421 , HOH F:440 , HOH F:462
BINDING SITE FOR RESIDUE ARG F 412
10
MND
AUTHOR
MN D:300 , HIS D:99 , ASP D:122 , ASP D:126 , ASP D:226
SITE COMPRISES ONE MN ATOM, MN D 300, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 10) NH2 AND A WATER W4
11
MNE
AUTHOR
MN E:300 , HIS E:99 , ASP E:122 , ASP E:126 , ASP E:226
SITE COMPRISES ONE MN ATOM, MN E 200, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 11) NH2 AND A WATER W5
12
MNF
AUTHOR
MN F:300 , HIS F:99 , ASP F:122 , ASP F:126 , ASP F:226
SITE COMPRISES ONE MN ATOM, MN F 200, WHICH IS BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, ASP 226 OD2, THE SUBSTRATE (R 12) NH2 AND A WATER W6
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (D:224-245,E:224-245,F:224-245)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI_BACCD
224-245
3
-
-
-
D:224-245
E:224-245
F:224-245
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3ceva_ (A:)
1b: SCOP_d3ceve_ (E:)
1c: SCOP_d3cevf_ (F:)
1d: SCOP_d3cevb_ (B:)
1e: SCOP_d3cevc_ (C:)
1f: SCOP_d3cevd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Bacillus caldovelox [TaxId: 33931]
(5)
1a
d3ceva_
A:
1b
d3ceve_
E:
1c
d3cevf_
F:
1d
d3cevb_
B:
1e
d3cevc_
C:
1f
d3cevd_
D:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3cevA00 (A:2-299)
1b: CATH_3cevB00 (B:2-299)
1c: CATH_3cevC00 (C:2-299)
1d: CATH_3cevD00 (D:2-299)
1e: CATH_3cevE00 (E:2-299)
1f: CATH_3cevF00 (F:2-299)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Bacillus caldovelox. Organism_taxid: 33931. Strain: bacillus species dsm 411.
(5)
1a
3cevA00
A:2-299
1b
3cevB00
B:2-299
1c
3cevC00
C:2-299
1d
3cevD00
D:2-299
1e
3cevE00
E:2-299
1f
3cevF00
F:2-299
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain D
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Chain F
Asymmetric Unit 1
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Asym.Unit (297 KB)
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