3ZG1 - JenaLib

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Title :   NI-BOUND FORM OF M123A MUTANT OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS

Authors :   E. Girard, J. Coves

Date :   13 Dec 12 (Deposition) - 23 Oct 13 (Release) - 12 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: C,D  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Metal Binding Protein, Sensor Protein, Signal Transduction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Trepreau, C. Grosse, J. -M. Mouesca, G. Sarret, E. Girard, I. Petit-Haertlein, S. Kuennemann, C. Desbourdes, E. De Rosny, A. P. Maillard, D. H. Nies, J. Coves
Metal Sensing And Signal Transduction By Cnrx From Cupriavidus Metallidurans Ch34: Role Of The Only Methionine Assessed By A Functional, Spectroscopic, And Theoretical Study
Metallomics V. 6 263 2014
PubMed-ID: 24154823 | Reference-DOI: 10.1039/C3MT00248A

Molecule 1 - NICKEL AND COBALT RESISTANCE PROTEIN CNRR
	Atcc	:	43123
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET30
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	METAL-SENSOR DOMAIN, RESIDUES 31-148
	Mutation	:	YES
	Organism Scientific	:	CUPRIAVIDUS METALLIDURANS
	Organism Taxid	:	266264
	Strain	:	CH34

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:			C	D
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 14)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	GOL	3	Ligand/Ion	GLYCEROL
3	NI	4	Ligand/Ion	NICKEL (II) ION
4	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	3	Ligand/Ion	GLYCEROL
3	NI	-1	Ligand/Ion	NICKEL (II) ION
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	NI	-1	Ligand/Ion	NICKEL (II) ION
4	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:42 , GLU A:63 , HIS A:119	BINDING SITE FOR RESIDUE NI A 150
02	AC2	SOFTWARE	HIS B:42 , HIS B:46 , GLU B:63 , HIS B:119 , HOH B:2003	BINDING SITE FOR RESIDUE NI B 150
03	AC3	SOFTWARE	HIS C:42 , GLU C:63 , HIS C:119 , HOH C:2037	BINDING SITE FOR RESIDUE NI C 150
04	AC4	SOFTWARE	HIS D:42 , HIS D:46 , GLU D:63 , HIS D:119 , HOH D:2002	BINDING SITE FOR RESIDUE NI D 150
05	AC5	SOFTWARE	ARG A:71 , ASN C:54 , ALA C:125 , GLY C:126 , LEU C:127 , LYS C:128 , HOH C:2004	BINDING SITE FOR RESIDUE GOL C1149
06	AC6	SOFTWARE	GLU A:57 , PHE C:66 , GLU C:122 , HOH C:2009 , HOH C:2011 , HOH C:2025	BINDING SITE FOR RESIDUE GOL C1150
07	AC7	SOFTWARE	GLU A:60 , HOH A:2014 , ASN B:91 , TRP B:94 , SER B:95 , LYS C:62 , GLU C:122	BINDING SITE FOR RESIDUE GOL C1151
08	AC8	SOFTWARE	LEU A:61 , LYS A:62 , ALA A:65 , HOH A:2017 , PGE C:1153 , ASN D:91 , ALA D:93 , TRP D:94	BINDING SITE FOR RESIDUE PEG A1149
09	AC9	SOFTWARE	GLU A:106 , ARG A:107 , GLY A:110 , ASP A:111 , HOH A:2062 , GLU B:106 , ARG B:107	BINDING SITE FOR RESIDUE PEG A1150
10	BC1	SOFTWARE	ARG C:76 , GLU C:104 , ARG C:107	BINDING SITE FOR RESIDUE PEG C1152
11	BC2	SOFTWARE	HIS A:46 , GLU A:47 , GLU A:60 , GLU A:63 , HOH A:2005 , HOH A:2006 , LYS B:90 , SER B:95 , GLU B:97	BINDING SITE FOR RESIDUE PEG A1151
12	BC3	SOFTWARE	PHE A:66 , ARG A:69 , ALA A:115 , GLU A:122 , PEG A:1149 , GLU C:57 , HOH C:2006	BINDING SITE FOR RESIDUE PGE C1153
13	BC4	SOFTWARE	GLN B:113	BINDING SITE FOR RESIDUE CL B1149
14	BC5	SOFTWARE	ARG B:137 , HOH B:2022 , ARG D:124	BINDING SITE FOR RESIDUE CL B1150

(no "SS Bond" information available for 3ZG1)

(no "Cis Peptide Bond" information available for 3ZG1)

(no "SAP(SNP)/Variant" information available for 3ZG1)

(no "PROSITE Motif" information available for 3ZG1)

(no "Exon" information available for 3ZG1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:109
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:109
                                    49        59        69        79        89        99       109       119       129       139         
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3zg1 A  40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEARAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    49        59        69        79        89        99       109       119       129       139

Chain B from PDB  Type:PROTEIN  Length:109
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:109
                                    49        59        69        79        89        99       109       119       129       139         
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3zg1 B  40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEARAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    49        59        69        79        89        99       109       119       129       139

Chain C from PDB  Type:PROTEIN  Length:109
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:109
                                    49        59        69        79        89        99       109       119       129       139         
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3zg1 C  40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEARAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    49        59        69        79        89        99       109       119       129       139

Chain D from PDB  Type:PROTEIN  Length:110
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:110
                                    48        58        68        78        88        98       108       118       128       138       148
           CNRR_CUPMC    39 GDLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3zg1 D  39 GDLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEARAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    48        58        68        78        88        98       108       118       128       138       148

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3ZG1)

(no "CATH Domain" information available for 3ZG1)

(no "Pfam Domain" information available for 3ZG1)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (CNRR_CUPMC | P37975)

cellular component
	GO:0042597		periplasmic space		The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	Cis Peptide Bonds
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	3zg1
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UniProtKB/Swiss-Prot
	CNRR_CUPMC \| P37975	:	2y39 2y3b 2y3d 2y3g 2y3h 3epv 4wwb 4wwd 4wwf

2y39	NI-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3b	CO-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3d	ZN-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3g	SE-MET FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3h	E63Q MUTANT OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Gene Ontology (1, 1)

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