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(-) Description

Title :  E63Q MUTANT OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
 
Authors :  J. Trepreau, E. Girard, A. P. Maillard, E. De Rosny, I. Petit-Haertlei J. Coves
Date :  20 Dec 10  (Deposition) - 30 Mar 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B,C  (1x)
Biol. Unit 2:  A,D  (1x)
Keywords :  Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Trepreau, E. Girard, A. P. Maillard, E. De Rosny, I. Petit-Haertlein, R. Kahn, J. Coves
Structural Basis For Metal Sensing By Cnrx.
J. Mol. Biol. V. 408 766 2011
PubMed-ID: 21414325  |  Reference-DOI: 10.1016/J.JMB.2011.03.014
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NICKEL AND COBALT RESISTANCE PROTEIN CNRR
    Atcc: 43123
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET30
    Expression System Vector Type: PLASMID
    Fragment: METAL-SENSOR DOMAIN, RESIDUES 31-148
    Mutation: YES
    Organism Scientific: CUPRIAVIDUS METALLIDURANS
    Organism Taxid: 266264
    Strain: CH34
    Synonym: NICKEL AND COBALT RESISTANCE PROTEIN CNRX

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):  BC 
Biological Unit 2 (1x): A  D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:66 , GLU A:122 , HOH A:2096 , HOH A:2124BINDING SITE FOR RESIDUE GOL A1148
2AC2SOFTWAREGLU A:57 , HOH A:2125 , HOH A:2126 , HOH A:2127 , HOH A:2128BINDING SITE FOR RESIDUE GOL A1149
3AC3SOFTWAREPHE C:66 , ARG C:69 , ALA C:115 , HIS C:119 , GLU C:122 , HOH C:2104 , HOH C:2105BINDING SITE FOR RESIDUE GOL C1148
4AC4SOFTWAREALA D:65 , PHE D:66 , ARG D:69 , ALA D:115 , HIS D:119 , GLU D:122 , HOH D:2059BINDING SITE FOR RESIDUE GOL D1147

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Y3H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Y3H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Y3H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Y3H)

(-) Exons   (0, 0)

(no "Exon" information available for 2Y3H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:110
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:110
                                    47        57        67        77        87        97       107       117       127       137       147
           CNRR_CUPMC    38 HGDLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGS 147
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2y3h A  38 HGDLHEILHEAVPLDANEREILELKQDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGS 147
                                    47        57        67        77        87        97       107       117       127       137       147


Chain B from PDB  Type:PROTEIN  Length:109
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:109
                                    49        59        69        79        89        99       109       119       129       139         
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2y3h B  40 DLHEILHEAVPLDANEREILELKQDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    49        59        69        79        89        99       109       119       129       139         


Chain C from PDB  Type:PROTEIN  Length:108
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:108
                                    49        59        69        79        89        99       109       119       129       139        
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGS 147
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2y3h C  40 DLHEILHEAVPLDANEREILELKQDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGS 147
                                    49        59        69        79        89        99       109       119       129       139        


Chain D from PDB  Type:PROTEIN  Length:107
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:107
                                    49        59        69        79        89        99       109       119       129       139       
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRG 146
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 2y3h D  40 DLHEILHEAVPLDANEREILELKQDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRG 146
                                    49        59        69        79        89        99       109       119       129       139
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Y3H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Y3H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2Y3H)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (CNRR_CUPMC | P37975)
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  2y3h
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CNRR_CUPMC | P37975: 2y39 2y3b 2y3d 2y3g 3epv 3zg1 4wwb 4wwd 4wwf

(-) Related Entries Specified in the PDB File

2y39 NI-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3b CO-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3d ZN-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3g SE-MET FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS