2Y3G - JenaLib

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Title :   SE-MET FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS

Authors :   J. Trepreau, E. Girard, A. P. Maillard, E. De Rosny, I. Petit-Haertlei J. Coves

Date :   20 Dec 10 (Deposition) - 30 Mar 11 (Release) - 27 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.91

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Trepreau, E. Girard, A. P. Maillard, E. De Rosny, I. Petit-Haertlein, R. Kahn, J. Coves
Structural Basis For Metal Sensing By Cnrx.
J. Mol. Biol. V. 408 766 2011
PubMed-ID: 21414325 | Reference-DOI: 10.1016/J.JMB.2011.03.014
(for further references see the PDB file header)

Molecule 1 - NICKEL AND COBALT RESISTANCE PROTEIN CNRR
	Atcc	:	43123
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET30
	Expression System Vector Type	:	PLASMID
	Fragment	:	METAL-SENSOR DOMAIN, RESIDUES 31-148
	Organism Scientific	:	CUPRIAVIDUS METALLIDURANS
	Organism Taxid	:	266264
	Strain	:	CH34
	Synonym	:	NICKEL AND COBALT RESISTANCE PROTEIN CNRX

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 13)

No.	Name	Count	Type	Full Name
1	CL	3	Ligand/Ion	CHLORIDE ION
2	GOL	3	Ligand/Ion	GLYCEROL
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	3	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:42 , HIS A:46 , GLU A:63 , HIS A:119	BINDING SITE FOR RESIDUE ZN A 150
2	AC2	SOFTWARE	HIS B:42 , HIS B:46 , GLU B:63 , HIS B:119 , MSE B:123	BINDING SITE FOR RESIDUE ZN B 150
3	AC3	SOFTWARE	HIS C:42 , HIS C:46 , GLU C:63 , HIS C:119 , MSE C:123	BINDING SITE FOR RESIDUE ZN C 150
4	AC4	SOFTWARE	ARG A:69 , ASP A:111 , ALA A:115	BINDING SITE FOR RESIDUE CL A1149
5	AC5	SOFTWARE	ILE B:44 , ARG B:145	BINDING SITE FOR RESIDUE CL B1149
6	AC6	SOFTWARE	PHE A:66 , GLU A:122 , HOH A:2070	BINDING SITE FOR RESIDUE GOL A1150
7	AC7	SOFTWARE	ALA B:65 , PHE B:66 , GLU B:122 , HOH B:2015 , HOH B:2075 , HOH B:2076	BINDING SITE FOR RESIDUE GOL B1151
8	AC8	SOFTWARE	GLU B:60 , HOH B:2077 , HOH B:2078 , TRP C:94 , PRO C:96 , HOH C:2026	BINDING SITE FOR RESIDUE GOL B1152

(no "SS Bond" information available for 2Y3G)

(no "Cis Peptide Bond" information available for 2Y3G)

(no "SAP(SNP)/Variant" information available for 2Y3G)

(no "PROSITE Motif" information available for 2Y3G)

(no "Exon" information available for 2Y3G)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:109
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:109
                                    49        59        69        79        89        99       109       119       129       139         
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2y3g A  40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEmRAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    49        59        69        79        89        99       109       119   |   129       139         
                                                                                                             123-MSE

Chain B from PDB  Type:PROTEIN  Length:110
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:110
                                    48        58        68        78        88        98       108       118       128       138       148
           CNRR_CUPMC    39 GDLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2y3g B  39 GDLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEmRAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    48        58        68        78        88        98       108       118    |  128       138       148
                                                                                                              123-MSE

Chain C from PDB  Type:PROTEIN  Length:109
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:109
                                    49        59        69        79        89        99       109       119       129       139         
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2y3g C  40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEmRAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    49        59        69        79        89        99       109       119   |   129       139         
                                                                                                             123-MSE

Chain D from PDB  Type:PROTEIN  Length:109
 aligned with CNRR_CUPMC | P37975 from UniProtKB/Swiss-Prot  Length:148

    Alignment length:109
                                    49        59        69        79        89        99       109       119       129       139         
           CNRR_CUPMC    40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDALRRGSQ 148
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2y3g D  40 DLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEmRAGLKPEHRPAYDRVLIDALRRGSQ 148
                                    49        59        69        79        89        99       109       119   |   129       139         
                                                                                                             123-MSE

Legend:		→ Mismatch	(orange background)
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		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2Y3G)

(no "CATH Domain" information available for 2Y3G)

(no "Pfam Domain" information available for 2Y3G)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (CNRR_CUPMC | P37975)

cellular component
	GO:0042597		periplasmic space		The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2y3g)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	2y3g
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	CNRR_CUPMC \| P37975
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	CNRR_CUPMC \| P37975
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UniProtKB/Swiss-Prot
	CNRR_CUPMC \| P37975	:	2y39 2y3b 2y3d 2y3h 3epv 3zg1 4wwb 4wwd 4wwf

2y39	NI-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3b	CO-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3d	ZN-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS
2y3h	E63Q MUTANT OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 13)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (1, 1)

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