3V6R - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   DISCOVERY OF POTENT AND SELECTIVE COVALENT INHIBITORS OF JNK

Authors :   H. Park, P. V. Lograsso, J. D. Laughlin

Date :   20 Dec 11 (Deposition) - 01 Feb 12 (Release) - 25 Jul 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Kinase Fold, Apoptosis, Map Kinase, Cys Modification, Phosphorylation, Jnk, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Zhang, F. Inesta-Vaquera, M. Niepel, J. Zhang, S. B. Ficarro, T. Machleidt, T. Xie, J. A. Marto, N. Kim, T. Sim, J. D. Laughlin, H. Park P. V. Lograsso, M. Patricelli, T. K. Nomanbhoy, P. K. Sorger, D. R. Alessi, N. S. Gray
Discovery Of Potent And Selective Covalent Inhibitors Of Jnk.
Chem. Biol. V. 19 140 2012
PubMed-ID: 22284361 | Reference-DOI: 10.1016/J.CHEMBIOL.2011.11.010

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 10
	Chains	:	A, B
	EC Number	:	2.7.11.24
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	MAPK10, JNK3, JNK3A, PRKM10, SAPK1B
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	MAP KINASE 10, MAPK 10, MAP KINASE P49 3F12, STRESS- ACTIVATED PROTEIN KINASE 1B, SAPK1B, STRESS-ACTIVATED PROTEIN KINASE JNK3, C-JUN N-TERMINAL KINASE 3

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CQQ	2	Ligand/Ion	4-{[4-(DIMETHYLAMINO)BUTANOYL]AMINO}-N-(3-{[4-(PYRIDIN-3-YL)PYRIMIDIN-2-YL]AMINO}PHENYL)BENZAMIDE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CQQ	1	Ligand/Ion	4-{[4-(DIMETHYLAMINO)BUTANOYL]AMINO}-N-(3-{[4-(PYRIDIN-3-YL)PYRIMIDIN-2-YL]AMINO}PHENYL)BENZAMIDE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CQQ	1	Ligand/Ion	4-{[4-(DIMETHYLAMINO)BUTANOYL]AMINO}-N-(3-{[4-(PYRIDIN-3-YL)PYRIMIDIN-2-YL]AMINO}PHENYL)BENZAMIDE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:70 , GLY A:71 , VAL A:78 , ALA A:91 , GLU A:147 , MET A:149 , ASN A:152 , CYS A:154 , GLN A:155 , SER A:193 , LEU A:206 , TYR A:229 , HOH A:437 , HOH A:498	BINDING SITE FOR RESIDUE CQQ A 403
2	AC2	SOFTWARE	ILE B:70 , VAL B:78 , ALA B:91 , GLU B:147 , MET B:149 , ASN B:152 , CYS B:154 , GLN B:155 , SER B:193 , LEU B:206 , TYR B:229	BINDING SITE FOR RESIDUE CQQ B 403

(no "SS Bond" information available for 3V6R)

Asymmetric Unit

No.	Residues
1	Gly A:73	-	Ala A:74
2	Ala A:214	-	Gly A:215
3	Gln A:379	-	Leu A:380
4	Gly B:73	-	Ala B:74
5	Ser B:217	-	Phe B:218
6	Ala B:320	-	Asp B:321

(no "SAP(SNP)/Variant" information available for 3V6R)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MAPK	PS01351	MAP kinase signature.	MK10_HUMAN	99-201	2	A:99-201 B:99-201
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	MK10_HUMAN	185-197	2	A:185-197 B:185-197

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MAPK	PS01351	MAP kinase signature.	MK10_HUMAN	99-201	1	A:99-201 -
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	MK10_HUMAN	185-197	1	A:185-197 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MAPK	PS01351	MAP kinase signature.	MK10_HUMAN	99-201	1	- B:99-201
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	MK10_HUMAN	185-197	1	- B:185-197

Asymmetric Unit (10, 20)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.6b	ENST00000395169	6b	ENSE00002029030	chr4:87281269-87280811	459	MK10_HUMAN	-	0	0	-	-
1.11c	ENST00000395169	11c	ENSE00001352600	chr4:87275797-87275683	115	MK10_HUMAN	-	0	0	-	-
1.14c	ENST00000395169	14c	ENSE00001520792	chr4:87115560-87115462	99	MK10_HUMAN	-	0	0	-	-
1.17d	ENST00000395169	17d	ENSE00002157878	chr4:87080620-87080451	170	MK10_HUMAN	1-41	41	0	-	-
1.19g	ENST00000395169	19g	ENSE00002201403	chr4:87028505-87028376	130	MK10_HUMAN	41-84	44	2	A:45-84 B:45-84	40 40
1.20b	ENST00000395169	20b	ENSE00001800335	chr4:87024397-87024339	59	MK10_HUMAN	85-104	20	2	A:85-104 B:85-104	20 20
1.21b	ENST00000395169	21b	ENSE00001654569	chr4:87023185-87023047	139	MK10_HUMAN	104-150	47	2	A:104-150 B:104-150	47 47
1.22b	ENST00000395169	22b	ENSE00001609893	chr4:87022370-87022205	166	MK10_HUMAN	151-206	56	2	A:151-206 B:151-206	56 56
1.23c	ENST00000395169	23c	ENSE00001789401	chr4:87019748-87019677	72	MK10_HUMAN	206-230	25	2	A:206-230 (gaps) B:206-230 (gaps)	25 25
1.28b	ENST00000395169	28b	ENSE00000729500	chr4:86989108-86988926	183	MK10_HUMAN	230-291	62	2	A:230-291 B:230-291	62 62
1.29	ENST00000395169	29	ENSE00000729498	chr4:86985543-86985419	125	MK10_HUMAN	291-332	42	2	A:291-332 B:291-332	42 42
1.30	ENST00000395169	30	ENSE00001076721	chr4:86952584-86952521	64	MK10_HUMAN	333-354	22	2	A:333-354 B:333-354	22 22
1.31	ENST00000395169	31	ENSE00001218615	chr4:86950427-86950350	78	MK10_HUMAN	354-380	27	2	A:354-380 (gaps) B:354-380 (gaps)	27 27
1.32h	ENST00000395169	32h	ENSE00001811960	chr4:86938523-86936276	2248	MK10_HUMAN	380-426	47	2	A:380-401 B:380-401	22 22

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:350
 aligned with MK10_HUMAN | P53779 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:357
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       
           MK10_HUMAN    45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 401
               SCOP domains d3v6ra_ A: automated matches                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeee..eeeeeeeee....eeeeeee....eeeeeee......hhhhhhhhhhhhhhhhhh.......eeeee............eeeee...eehhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...............----......hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh........hhhhhhh...hhhhhhhhhhh......---.......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------MAPK  PDB: A:99-201 UniProt: 99-201                                                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.19g  PDB: A:45-84 UniProt: 41-84 Exon 1.20b          ----------------------------------------------Exon 1.22b  PDB: A:151-206 UniProt: 151-206             -----------------------Exon 1.28b  PDB: A:230-291 UniProt: 230-291                   -----------------------------------------Exon 1.30             -------------------------Exon 1.32h             Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------Exon 1.21b  PDB: A:104-150 UniProt: 104-150    -------------------------------------------------------Exon 1.23c               ------------------------------------------------------------Exon 1.29  PDB: A:291-332 UniProt: 291-332---------------------Exon 1.31 UniProt: 354-380 --------------------- Transcript 1 (2)
                 3v6r A  45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM----VTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQI---QLDEREHTIEEWKELIYKEVMNS 401
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214     |   -|      234       244       254       264       274       284       294       304       314       324       334       344       354       364       374|   |  384       394       
                                                                                                                                                                                                         220  225                                                                                                                                                   375 379

Chain B from PDB  Type:PROTEIN  Length:347
 aligned with MK10_HUMAN | P53779 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:357
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       
           MK10_HUMAN    45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNS 401
               SCOP domains d3v6rb_ B: automated matches                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeee..eeeeeeeee....eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeee..........eeeeeee...ee.........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.............------......hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh........hhhhhhh...hhhhhhhhhhh......----......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------MAPK  PDB: B:99-201 UniProt: 99-201                                                                    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.19g  PDB: B:45-84 UniProt: 41-84 Exon 1.20b          ----------------------------------------------Exon 1.22b  PDB: B:151-206 UniProt: 151-206             -----------------------Exon 1.28b  PDB: B:230-291 UniProt: 230-291                   -----------------------------------------Exon 1.30             -------------------------Exon 1.32h             Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------Exon 1.21b  PDB: B:104-150 UniProt: 104-150    -------------------------------------------------------Exon 1.23c               ------------------------------------------------------------Exon 1.29  PDB: B:291-332 UniProt: 291-332---------------------Exon 1.31 UniProt: 354-380 --------------------- Transcript 1 (2)
                 3v6r B  45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF------VTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQI----LDEREHTIEEWKELIYKEVMNS 401
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214   |     -|      234       244       254       264       274       284       294       304       314       324       334       344       354       364       374|    | 384       394       
                                                                                                                                                                                                       218    225                                                                                                                                                   375  380

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: Protein kinases, catalytic subunit (1977)

Protein domain: automated matches (542)

Human (Homo sapiens) [TaxId: 9606] (452)

1a	d3v6ra_	A:
1b	d3v6rb_	B:

(no "CATH Domain" information available for 3V6R)

(no "Pfam Domain" information available for 3V6R)

Asymmetric Unit(hide GO term definitions)

Chain A,B (MK10_HUMAN | P53779)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0004705	JUN kinase activity	Catalysis of the reaction: JUN + ATP = JUN phosphate + ADP. This reaction is the phosphorylation and activation of members of the JUN family, a gene family that encodes nuclear transcription factors.
	GO:0004707	MAP kinase activity	Catalysis of the reaction: protein + ATP = protein phosphate + ADP. This reaction is the phosphorylation of proteins. Mitogen-activated protein kinase; a family of protein kinases that perform a crucial step in relaying signals from the plasma membrane to the nucleus. They are activated by a wide range of proliferation- or differentiation-inducing signals; activation is strong with agonists such as polypeptide growth factors and tumor-promoting phorbol esters, but weak (in most cell backgrounds) by stress stimuli.
	GO:0004708	MAP kinase kinase activity	Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in a MAP kinase (MAPK) substrate.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0038095	Fc-epsilon receptor signaling pathway	A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
	GO:0007254	JNK cascade	An intracellular protein kinase cascade containing at least a JNK (a MAPK), a JNKK (a MAPKK) and a JUN3K (a MAP3K). The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
	GO:0007258	JUN phosphorylation	The process of introducing a phosphate group into a JUN protein.
	GO:0000187	activation of MAPK activity	The initiation of the activity of the inactive enzyme MAP kinase (MAPK).
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0042752	regulation of circadian rhythm	Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
	GO:0051090	regulation of sequence-specific DNA binding transcription factor activity	Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
	GO:0009416	response to light stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
	GO:0048511	rhythmic process	Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	Cis Peptide Bonds
		Ala A:214 - Gly A:215	[ RasMol ]
		Ala B:320 - Asp B:321	[ RasMol ]
		Gln A:379 - Leu A:380	[ RasMol ]
		Gly A:73 - Ala A:74	[ RasMol ]
		Gly B:73 - Ala B:74	[ RasMol ]
		Ser B:217 - Phe B:218	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Access by PDB/NDB ID
	3v6r
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
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		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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Access by UniProt ID/Accession number
	MK10_HUMAN \| P53779
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	2.7.11.24
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		Disease Information	:	OMIM

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (10, 20)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (28, 28)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File