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(-) Description

Title :  CRYSTAL STRUCTURE OF JNK3 IN COMPLEX WITH SAB PEPTIDE
 
Authors :  J. C. Nwachukwu, J. D. Laughlin, M. Figuera-Losada, L. Cherry, K. W. Net P. V. Lograsso
Date :  13 Sep 12  (Deposition) - 21 Nov 12  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Sh3Bp-5, Mapk, Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Laughlin, J. C. Nwachukwu, M. Figuera-Losada, L. Cherry, K. W. Nettles, P. V. Lograsso
Structural Mechanisms Of Allostery And Autoinhibition In Jn Family Kinases.
Structure V. 20 2174 2012
PubMed-ID: 23142346  |  Reference-DOI: 10.1016/J.STR.2012.09.021

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 10
    Chains: A, C
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CATALYTIC DOMAIN (UNP RESIDUES 45-400)
    Gene: MAPK10, JNK3, JNK3A, PRKM10, SAPK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAP KINASE 10, MAPK 10, MAP KINASE P49 3F12, STRESS- ACTIVATED PROTEIN KINASE 1B, SAPK1B, STRESS-ACTIVATED PROTEIN KINASE JNK3, C-JUN N-TERMINAL KINASE 3
 
Molecule 2 - SH3 DOMAIN-BINDING PROTEIN 5
    Chains: B, D
    Engineered: YES
    Fragment: UNP RESIDUES 341-350
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SH3BP-5, SH3 DOMAIN-BINDING PROTEIN THAT PREFERENTIALLY ASSOCIATES WITH BTK
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4H3B)

(-) Sites  (0, 0)

(no "Site" information available for 4H3B)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H3B)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Thr A:221 -Pro A:222
2Thr C:221 -Pro C:222
3Lys C:326 -Leu C:327

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H3B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H3B)

(-) Exons   (0, 0)

(no "Exon" information available for 4H3B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeee..eeeeeeeeee..eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhh........eeeee............eeeee...eehhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.........hhhhhh.....hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhh.......hhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhh.......hhhhh....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h3b A  45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMN 400
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314    || 329       339       349       359       369       379       389       399 
                                                                                                                                                                                                                                                                                                            319|                                                                           
                                                                                                                                                                                                                                                                                                             325                                                                           


Chain B from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4h3b B 341 VVRPGSLDLP 350
                                   350


Chain C from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeee..eeeeeeeeee..eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhh........eeeee............eeeee...eehhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.........hhhhhh.....hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhh.......hhhhh....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h3b C  45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMN 400
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314    || 329       339       349       359       369       379       389       399 
                                                                                                                                                                                                                                                                                                            319|                                                                           
                                                                                                                                                                                                                                                                                                             325                                                                           


Chain D from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4h3b D 341 VVRPGSLDLP 350
                                   350
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H3B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H3B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H3B)

(-) Gene Ontology  (33, 37)

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  Cis Peptide Bonds
    Lys C:326 - Leu C:327   [ RasMol ]  
    Thr A:221 - Pro A:222   [ RasMol ]  
    Thr C:221 - Pro C:222   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK10_HUMAN | P53779: 1jnk 1pmn 1pmu 1pmv 2b1p 2exc 2o0u 2o2u 2ok1 2p33 2r9s 2waj 2zdt 2zdu 3cgf 3cgo 3da6 3fi2 3fi3 3fv8 3g90 3g9l 3g9n 3kvx 3oxi 3oy1 3ptg 3rtp 3tti 3ttj 3v6r 3v6s 4h36 4h39 4kke 4kkg 4kkh 4u79 4w4v 4w4w 4w4x 4w4y 4whz 4x21 4y46 4y5h 4z9l

(-) Related Entries Specified in the PDB File

4h36 JNK3 COMPLEXED WITH ATF2 PEPTIDE
4h39 JNK3 COMPLEXED WITH JIP1 PEPTIDE