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(-) Description

Title :  THE MAP KINASE JNK3 AS TARGET FOR HALOGEN BONDING
 
Authors :  A. Lange, F. M. Buettner, M. B. Guenther, M. O. Zimmermann, S. Hennig, S. T. Stehle, F. Boeckler
Date :  25 Nov 14  (Deposition) - 11 Nov 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Mapk, Halogen Bond Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Lange, M. Gunther, F. M. Buttner, M. O. Zimmermann, J. Heidrich, S. Hennig, S. Zahn, C. Schall, A. Sievers-Engler, F. Ansideri, P. Koch M. Laemmerhofer, T. Stehle, S. A. Laufer, F. M. Boeckler
Targeting The Gatekeeper Met146 Of C-Jun N-Terminal Kinase Induces A Bivalent Halogen/Chalcogen Bond.
J. Am. Chem. Soc. V. 137 14640 2015
PubMed-ID: 26505827  |  Reference-DOI: 10.1021/JACS.5B07090

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 10
    Chains: A, B
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24A
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 39-402
    Gene: MAPK10, JNK3, JNK3A, PRKM10, SAPK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAPK 10,MAP KINASE P49 3F12,STRESS-ACTIVATED PROTEIN KINASE 1B,SAPK1B,STRESS-ACTIVATED PROTEIN KINASE JNK3,C-JUN N-TERMINAL KINASE 3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
13WH2Ligand/IonN-ETHYL-4-{[4-(1H-INDOL-3-YL)-5-IODOPYRIMIDIN-2-YL]AMINO}PIPERIDINE-1-CARBOXAMIDE
2CL2Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
13WH1Ligand/IonN-ETHYL-4-{[4-(1H-INDOL-3-YL)-5-IODOPYRIMIDIN-2-YL]AMINO}PIPERIDINE-1-CARBOXAMIDE
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
13WH1Ligand/IonN-ETHYL-4-{[4-(1H-INDOL-3-YL)-5-IODOPYRIMIDIN-2-YL]AMINO}PIPERIDINE-1-CARBOXAMIDE
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:78 , ALA A:91 , MET A:146 , GLU A:147 , MET A:149 , ASP A:150 , ALA A:151 , ASN A:152 , GLN A:155 , LEU A:206 , HOH A:715 , HOH A:782binding site for residue 3WH A 501
2AC2SOFTWAREARG A:227 , ASP A:267 , TYR A:268 , ASP B:200 , HOH B:684binding site for residue CL A 502
3AC3SOFTWAREGLU B:242 , ASN B:243 , SER B:349 , VAL B:350 , HOH B:608binding site for residue CL B 502
4AC4SOFTWARESER B:72 , VAL B:78 , VAL B:90 , ALA B:91 , LYS B:93 , LEU B:144 , VAL B:145 , GLU B:147 , LEU B:148 , MET B:149 , ALA B:151 , ASN B:152 , GLN B:155binding site for Di-peptide 3WH B 501 and MET B 146

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X21)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4X21)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X21)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X21)

(-) Exons   (0, 0)

(no "Exon" information available for 4X21)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeee..eeeeeeeee...eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee............eeeee...eehhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...........hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4x21 A  46 NQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIDEREHTIEEWKELIYKEVMN 400
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205    || 229       239       249       259       269       279       289       299       309       319       329       339       349       359       369     ||384       394      
                                                                                                                                                                                              210|                                                                                                                                                   375|                   
                                                                                                                                                                                               225                                                                                                                                                    381                   


Chain B from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..eeeeee..eeeeeeeeee..eeeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeee..........eeeeeee...eehhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee............hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh........hhhhhhhh..hhhhhhhhhhh...........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4x21 B  47 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIDEREHTIEEWKELIYKEVMN 400
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206    || 229       239       249       259       269       279       289       299       309       319       329       339       349       359       369     ||384       394      
                                                                                                                                                                                              211|                                                                                                                                                   375|                   
                                                                                                                                                                                               225                                                                                                                                                    381
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X21)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X21)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X21)

(-) Gene Ontology  (28, 28)

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  4x21
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  MK10_HUMAN | P53779
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  2.7.11.24
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK10_HUMAN | P53779: 1jnk 1pmn 1pmu 1pmv 2b1p 2exc 2o0u 2o2u 2ok1 2p33 2r9s 2waj 2zdt 2zdu 3cgf 3cgo 3da6 3fi2 3fi3 3fv8 3g90 3g9l 3g9n 3kvx 3oxi 3oy1 3ptg 3rtp 3tti 3ttj 3v6r 3v6s 4h36 4h39 4h3b 4kke 4kkg 4kkh 4u79 4w4v 4w4w 4w4x 4w4y 4whz 4y46 4y5h 4z9l

(-) Related Entries Specified in the PDB File

2p33 2P33 IS THE SAME KINASE IN COMPLEX WITH ANOTHER LIGAND