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(-) Description

Title :  PYRIDOPYRIMIDINONE DERIVATIVES AS POTENT AND SELECTIVE C-JUN N-TERMINAL KINASE (JNK) INHIBITORS
 
Authors :  H. Park
Date :  11 Feb 15  (Deposition) - 06 May 15  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym./Biol. Unit :  A
Keywords :  Jnk, Map Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Zheng, C. M. Park, S. Iqbal, P. Hernandez, H. Park, P. V. Lograsso, Y. Feng
Pyridopyrimidinone Derivatives As Potent And Selective C-Ju N-Terminal Kinase (Jnk) Inhibitors.
Acs Med. Chem. Lett. V. 6 413 2015
PubMed-ID: 25893042  |  Reference-DOI: 10.1021/ML500474D

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 10
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 39-402
    Gene: MAPK10, JNK3, JNK3A, PRKM10, SAPK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAPK 10,MAP KINASE P49 3F12,STRESS-ACTIVATED PROTEIN KINASE 1B,SAPK1B,STRESS-ACTIVATED PROTEIN KINASE JNK3,C-JUN N-TERMINAL KINASE 3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
15191Ligand/Ion1-(TRANS-4-{[7-OXO-8-(PROPAN-2-YL)-7,8-DIHYDROPYRIDO[2,3-D]PYRIMIDIN-2-YL]AMINO}CYCLOHEXYL)-3-PROPAN-2-YLUREA

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:91 , GLU A:147 , MET A:149 , ASP A:150 , GLN A:155 , LEU A:206 , SER A:217binding site for residue 519 A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y5H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Y5H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y5H)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y5H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeee..eeeeeeeee....eeeeeee....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.......eeeee..........eeeeeee...eehhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......................hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhh.......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh........hhhhhhh........hhhhhh...........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y5h A  45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTASFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQLDEREHTIEEWKELIYKEVMN 400
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214|      226       236       246       256       266       276       286       296       306       316       326       336       346       356       366      |381       391         
                                                                                                                                                                                                   214|                                                                                                                                                         373|                     
                                                                                                                                                                                                    217                                                                                                                                                          379
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y5H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y5H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y5H)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  4y5h
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK10_HUMAN | P53779: 1jnk 1pmn 1pmu 1pmv 2b1p 2exc 2o0u 2o2u 2ok1 2p33 2r9s 2waj 2zdt 2zdu 3cgf 3cgo 3da6 3fi2 3fi3 3fv8 3g90 3g9l 3g9n 3kvx 3oxi 3oy1 3ptg 3rtp 3tti 3ttj 3v6r 3v6s 4h36 4h39 4h3b 4kke 4kkg 4kkh 4u79 4w4v 4w4w 4w4x 4w4y 4whz 4x21 4y46 4z9l

(-) Related Entries Specified in the PDB File

4y46