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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TETMINAL FRAGMENT OF ZEBRAFISH TLR5 IN COMPLEX WITH SALMONELLA FLAGELLIN
 
Authors :  S. I. Yoon, H. Hong, I. A. Wilson
Date :  14 Dec 11  (Deposition) - 29 Feb 12  (Release) - 07 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.47
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Innate Immunity, Leucine-Rich Repeat, Innate Immune Receptor, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. I. Yoon, O. Kurnasov, V. Natarajan, M. Hong, A. V. Gudkov, A. L. Osterman, I. A. Wilson
Structural Basis Of Tlr5-Flagellin Recognition And Signaling.
Science V. 335 859 2012
PubMed-ID: 22344444  |  Reference-DOI: 10.1126/SCIENCE.1215584

(-) Compounds

Molecule 1 - TOLL-LIKE RECEPTOR 5B AND VARIABLE LYMPHOCYTE RECEPTOR B.61 CHIMERIC PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HI5
    Expression System Taxid: 7111
    Fragment: ZEBRAFISH TOLL-LIKE RECEPTOR 5B (UNP RESIDUES 22-390), HAGFISH VARIABLE LYMPHOCYTE RECEPTOR B.61 (UNP RESIDUES 126-200)
    Mutation: YES
    Organism Common: ZEBRA FISH, INSHORE HAGFISH
    Organism Scientific: DANIO RERIO, EPTATRETUS BURGERI
    Organism Taxid: 7955, 7764
 
Molecule 2 - FLAGELLIN
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 48-466
    Gene: FLIC, FLIC1
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR DUBLIN
    Organism Taxid: 98360
    Synonym: PHASE 1-C FLAGELLIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric/Biological Unit (1, 11)
No.NameCountTypeFull Name
1NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:63BINDING SITE FOR RESIDUE NAG A 801
02AC2SOFTWAREASN A:89 , GLU A:112 , THR A:113BINDING SITE FOR RESIDUE NAG A 901
03AC3SOFTWARELYS A:197 , ASN A:228 , SER A:230 , NAG A:1002BINDING SITE FOR RESIDUE NAG A 1001
04AC4SOFTWARENAG A:1001BINDING SITE FOR RESIDUE NAG A 1002
05AC5SOFTWAREALA A:324 , GLN A:325 , LYS A:344 , ASN A:346 , GLN A:349 , ASP A:370 , HOH A:528 , NAG A:1102BINDING SITE FOR RESIDUE NAG A 1101
06AC6SOFTWAREGLN A:349 , NAG A:1101BINDING SITE FOR RESIDUE NAG A 1102
07AC7SOFTWAREASN B:89 , GLU B:112BINDING SITE FOR RESIDUE NAG B 901
08AC8SOFTWAREASN B:228 , SER B:230 , NAG B:1002BINDING SITE FOR RESIDUE NAG B 1001
09AC9SOFTWARENAG B:1001BINDING SITE FOR RESIDUE NAG B 1002
10BC1SOFTWARELYS B:344 , ASN B:346 , ASP B:370 , HOH B:637 , NAG B:1102BINDING SITE FOR RESIDUE NAG B 1101
11BC2SOFTWAREGLN B:349 , NAG B:1101BINDING SITE FOR RESIDUE NAG B 1102

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:25 -A:34
2A:187 -A:222
3A:426 -A:451
4A:428 -A:463
5B:25 -B:34
6B:187 -B:222
7B:426 -B:451
8B:428 -B:463

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Cys A:428 -Pro A:429
2Cys B:428 -Pro B:429

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3V47)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3V47)

(-) Exons   (0, 0)

(no "Exon" information available for 3V47)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:441
 aligned with B3DIN1_DANRE | B3DIN1 from UniProtKB/TrEMBL  Length:875

    Alignment length:638
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               604                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             603 |                                                        
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603 |     612       622       632       642       652        
         B3DIN1_DANRE    24 VCSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLELLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIQKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFRNSSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDDAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLRNLNLTGNAVESVHTFAALPNLNKLYLGKNRISSVSSLPNIAHNLSTLDLEFNKLHALSDLYTILREFPQIENIFLQGNTFSSCYNQKQIVLSDKLQLLHLGLSSMQLIWSEEKCLNVFADLHQLQQLSLTANGLQSLPKDIFKDLTSLFFLDLSFNSLKYLPTDVFPKSLQILNLDYNSIYSVDPNLFSTLGYLSLMNNDFRCDCDLKDFQT-WLNQTNVTFVHSIEDVTCASPEDQYMVPVVRSSIQCEDEEEERRTEKLRLVLFISCT 660
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee.................eee.......ee............eee........ee............eee.......ee............eee.......hhhhhh..........eee...........hhhhhhh....eee.............hhhhh..eeeeee..............hhhhhh......eeeeee......hhhhhhhhhhhh....eeeee.......................hhhhh.....eee.......ee............eee.......ee............eee.......eehhhhhh......eee.......ee............-----------------------------------------------------------------------------------------------------------------------------eee..................----------------------...eee....------.---------------.......hhhhhhhhhhh--------------...ee-------..........hhhh--------h... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v47 A  24 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK-----------------------------------------------------------------------------------------------------------------------------ELALDTNQLKSVPDGIFDRLT----------------------SLQKIWLHTN------P---------------WDCSCPRIDYLSRWLNKN--------------SQKEQ-------GSAKCSGSGKPVRS--------IICP 464
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       | -         -         -         -         -         -         -         -         -         -         -         -         -   |   398       408   |     -         -      |416     |   -  |      -       425       435     |   -         -|   |    -  |    454     |   -    |   
                                                                                                                                                                                                                                                                                                                                                                                                         391                                                                                                                           392                 412                    413      422    423             424              441            442 446     447          460      461   


Chain A from PDB  Type:PROTEIN  Length:441
 aligned with Q4G1L2_EPTBU | Q4G1L2 from UniProtKB/TrEMBL  Length:273

    Alignment length:441
                                                                                                                                                  40                                                                                                                                                                                                                                                                                                                                 
                                                                                            1                19         20 23    24             39 |        50                                                                          51        61                62     69                                             70                    92                  93    94                                                                                                         
                                     -         -         -         -         -         -    |    6        16  |      -   |  |  -  |     31       |40        50         -         -         -         -         -         -         -     |  55     |   -         -   |    68|        -         -         -         -       |72        82        92         -        93     |  98       108       118       128       138       148       158       168       178       188       198 
         Q4G1L2_EPTBU     - ----------------------------------------------------------------MKFALRGTCVLLALLLCCR----------NGKA-----CPSRCSCSGTEIRCNS-KGLTSVPTGIP---------------------------------------------------------------------------SSATRLELESN-----------------KLQSLPHG----------------------------------------------VFDKLTQLTKLSLSQNQIQSLPD-------------------G-----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP 199
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee.................eee.......ee............eee........ee............eee.......ee............eee.......hhhhhh..........eee...........hhhhhhh....eee.............hhhhh..eeeeee..............hhhhhh......eeeeee......hhhhhhhhhhhh....eeeee.......................hhhhh.....eee.......ee............eee.......ee............eee.......eehhhhhh......eee.......ee............eee.....................eee............hhhhhhhhhhh...ee..........hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v47 A  24 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP 464
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463 


Chain B from PDB  Type:PROTEIN  Length:441
 aligned with B3DIN1_DANRE | B3DIN1 from UniProtKB/TrEMBL  Length:875

    Alignment length:638
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               604                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             603 |                                                        
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603 |     612       622       632       642       652        
         B3DIN1_DANRE    24 VCSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLELLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIQKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFRNSSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDDAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLRNLNLTGNAVESVHTFAALPNLNKLYLGKNRISSVSSLPNIAHNLSTLDLEFNKLHALSDLYTILREFPQIENIFLQGNTFSSCYNQKQIVLSDKLQLLHLGLSSMQLIWSEEKCLNVFADLHQLQQLSLTANGLQSLPKDIFKDLTSLFFLDLSFNSLKYLPTDVFPKSLQILNLDYNSIYSVDPNLFSTLGYLSLMNNDFRCDCDLKDFQT-WLNQTNVTFVHSIEDVTCASPEDQYMVPVVRSSIQCEDEEEERRTEKLRLVLFISCT 660
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee.................eee.......ee............eee........ee............eee.......ee............eee.......hhhhhh..........eee...........hhhhhhh....eee.............hhhhh..eeeeee..............hhhhhh......eeeeee......hhhhhhhhhhhh....eeeee.......................hhhhh.....eee.......ee............eee.......ee............eee.......eehhhhhh......eee.......ee............-----------------------------------------------------------------------------------------------------------------------------eee..................----------------------...eee....------.---------------.......hhhhhhhhhhh--------------...ee-------..........hhhh--------h... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v47 B  24 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK-----------------------------------------------------------------------------------------------------------------------------ELALDTNQLKSVPDGIFDRLT----------------------SLQKIWLHTN------P---------------WDCSCPRIDYLSRWLNKN--------------SQKEQ-------GSAKCSGSGKPVRS--------IICP 464
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       | -         -         -         -         -         -         -         -         -         -         -         -         -   |   398       408   |     -         -      |416     |   -  |      -       425       435     |   -         -|   |    -  |    454     |   -    |   
                                                                                                                                                                                                                                                                                                                                                                                                         391                                                                                                                           392                 412                    413      422    423             424              441            442 446     447          460      461   


Chain B from PDB  Type:PROTEIN  Length:441
 aligned with Q4G1L2_EPTBU | Q4G1L2 from UniProtKB/TrEMBL  Length:273

    Alignment length:441
                                                                                                                                                  40                                                                                                                                                                                                                                                                                                                                 
                                                                                            1                19         20 23    24             39 |        50                                                                          51        61                62     69                                             70                    92                  93    94                                                                                                         
                                     -         -         -         -         -         -    |    6        16  |      -   |  |  -  |     31       |40        50         -         -         -         -         -         -         -     |  55     |   -         -   |    68|        -         -         -         -       |72        82        92         -        93     |  98       108       118       128       138       148       158       168       178       188       198 
         Q4G1L2_EPTBU     - ----------------------------------------------------------------MKFALRGTCVLLALLLCCR----------NGKA-----CPSRCSCSGTEIRCNS-KGLTSVPTGIP---------------------------------------------------------------------------SSATRLELESN-----------------KLQSLPHG----------------------------------------------VFDKLTQLTKLSLSQNQIQSLPD-------------------G-----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP 199
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee.................eee.......ee............eee........ee............eee.......ee............eee.......hhhhhh..........eee...........hhhhhhh....eee.............hhhhh..eeeeee..............hhhhhh......eeeeee......hhhhhhhhhhhh....eeeee.......................hhhhh.....eee.......ee............eee.......ee............eee.......eehhhhhh......eee.......ee............eee.....................eee............hhhhhhhhhhh...ee..........hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v47 B  24 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP 464
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463 


Chain C from PDB  Type:PROTEIN  Length:295
 aligned with FLIC_SALDU | Q06971 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:396
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454      
           FLIC_SALDU    65 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDINSGAVVTDAVAPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGDDGNGKVSTTINGEKVTLTVADIAIGAADVNAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANATGDKITLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSA 460
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhee..ee.....eeeeee.......eeeeee..................ee.hhhhhhhhh...eeeeeeee..eeeeee.....eee........ee......ee...ee...-----------------------------------------------------------------------------------------------------.ee.ee.hhhhhhhh..ee..eeee....eeee......ee.....eeeee.....eeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3v47 C  64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDINSGAVVTDAVAPDKVYVNAANGQLTTDDAENNT-----------------------------------------------------------------------------------------------------KTKNESAKLSDLEANNAVKGESKITVNGAEYTANATGDKITLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSA 459
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233        |-         -         -         -         -         -         -         -         -         -         -|      353       363       373       383       393       403       413       423       433       443       453      
                                                                                                                                                                                                            242                                                                                                   344                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:284
 aligned with FLIC_SALDU | Q06971 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:399
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452         
           FLIC_SALDU    63 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDINSGAVVTDAVAPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGDDGNGKVSTTINGEKVTLTVADIAIGAADVNAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANATGDKITLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSAR 461
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeee.......eeeeee..................ee.hhhhhhhhh...eeeeeeee..eeeeee.....eee..........------.....-------------------------------------------------------------------------------------------------------------....hhhhhhhh......eeeee..eeeee......eee..eeeeeee.....eeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v47 D  62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDINSGAVVTDAVAPDKVYV------LTTDD-------------------------------------------------------------------------------------------------------------NESAKLSDLEANNAVKGESKITVNGAEYTANATGDKITLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSAR 460
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221    |    - |   |   -         -         -         -         -         -         -         -         -         -         -     | 351       361       371       381       391       401       411       421       431       441       451         
                                                                                                                                                                                              226    233 237                                                                                                           347
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3V47)

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(no "CATH Domain" information available for 3V47)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V47)

(-) Gene Ontology  (9, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q4G1L2_EPTBU | Q4G1L2)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A,B   (B3DIN1_DANRE | B3DIN1)
biological process
    GO:0002253    activation of immune response    Any process that initiates an immune response.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain C,D   (FLIC_SALDU | Q06971)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0071973    bacterial-type flagellum-dependent cell motility    Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
cellular component
    GO:0009288    bacterial-type flagellum    A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
    GO:0009420    bacterial-type flagellum filament    The long (approximately 20 nm), thin external structure of the flagellum, which acts as a propeller. Examples of this component are found in bacteria.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  3v47
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  FLIC_SALDU | Q06971
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  Q4G1L2_EPTBU | Q4G1L2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q4G1L2_EPTBU | Q4G1L2: 2z62 2z63 2z65 2z66 2z7x 2z80 2z81 2z82
UniProtKB/TrEMBL
        B3DIN1_DANRE | B3DIN1: 3v44 5gy2
        Q4G1L2_EPTBU | Q4G1L2: 2o6r 3a79 3a7b 3a7c 3ul7 3ul8 3ul9 3ula 3v44 4arn 4arr 4bv4 4qdh 4qxe 4qxf 5gy2 5ijb 5ijc 5ijd

(-) Related Entries Specified in the PDB File

3v44