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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE N-TERMINAL FRAGMENT OF ZEBRAFISH TL COMPLEX WITH SALMONELLA FLAGELLIN
Keywords INNATE IMMUNITY, LEUCINE-RICH REPEAT, INNATE IMMUNE RECEPTOR SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3V47     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TOLL-LIKE RECEPTOR 5B AND VARIABLE LYMPHOCYTE REC CHIMERIC PROTEIN  A 441 3459 0
2  Protein   TOLL-LIKE RECEPTOR 5B AND VARIABLE LYMPHOCYTE REC CHIMERIC PROTEIN  B 441 3452 0
3  Protein   FLAGELLIN  C 295 2078 0
4  Protein   FLAGELLIN  D 284 2028 0
5  Ligand    E 2 0 28
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand   TOLL-LIKE RECEPTOR 5B AND VARIABLE LYMPHOCYTE REC CHIMERIC PROTEIN  A 2 0 28
10  Ligand   TOLL-LIKE RECEPTOR 5B AND VARIABLE LYMPHOCYTE REC CHIMERIC PROTEIN  B 1 0 14
11 Water     291 0 291
total       1763 11017 445
Proteins
Unit 1 GLU24 CYS25 SER26 VAL27 ILE28 GLY29 TYR30 ASN31 ALA32 ILE33 CYS34 ILE35 ASN36 ARG37 GLY38 LEU39 HIS40 GLN41 VAL42 PRO43 GLU44 LEU45 PRO46 ALA47 HIS48 VAL49 ASN50 TYR51 VAL52 ASP53 LEU54 SER55 LEU56 ASN57 SER58 ILE59 ALA60 GLU61 LEU62 ASN63 GLU64 THR65 SER66 PHE67 SER68 ARG69 LEU70 GLN71 ASP72 LEU73 GLN74 PHE75 LEU76 LYS77 VAL78 GLU79 GLN80 GLN81 THR82 PRO83 GLY84 LEU85 VAL86 ILE87 ARG88 ASN89 ASN90 THR91 PHE92 ARG93 GLY94 LEU95 SER96 SER97 LEU98 ILE99 ILE100 LEU101 LYS102 LEU103 ASP104 TYR105 ASN106 GLN107 PHE108 LEU109 GLN110 LEU111 GLU112 THR113 GLY114 ALA115 PHE116 ASN117 GLY118 LEU119 ALA120 ASN121 LEU122 GLU123 VAL124 LEU125 THR126 LEU127 THR128 GLN129 CYS130 ASN131 LEU132 ASP133 GLY134 ALA135 VAL136 LEU137 SER138 GLY139 ASN140 PHE141 PHE142 LYS143 PRO144 LEU145 THR146 SER147 LEU148 GLU149 MET150 LEU151 VAL152 LEU153 ARG154 ASP155 ASN156 ASN157 ILE158 LYS159 LYS160 ILE161 GLN162 PRO163 ALA164 SER165 PHE166 PHE167 LEU168 ASN169 MET170 ARG171 ARG172 PHE173 HIS174 VAL175 LEU176 ASP177 LEU178 THR179 PHE180 ASN181 LYS182 VAL183 LYS184 SER185 ILE186 CYS187 GLU188 GLU189 ASP190 LEU191 LEU192 ASN193 PHE194 GLN195 GLY196 LYS197 HIS198 PHE199 THR200 LEU201 LEU202 ARG203 LEU204 SER205 SER206 ILE207 THR208 LEU209 GLN210 ASP211 MET212 ASN213 GLU214 TYR215 TRP216 LEU217 GLY218 TRP219 GLU220 LYS221 CYS222 GLY223 ASN224 PRO225 PHE226 LYS227 ASN228 THR229 SER230 ILE231 THR232 THR233 LEU234 ASP235 LEU236 SER237 GLY238 ASN239 GLY240 PHE241 LYS242 GLU243 SER244 MET245 ALA246 LYS247 ARG248 PHE249 PHE250 ASP251 ALA252 ILE253 ALA254 GLY255 THR256 LYS257 ILE258 GLN259 SER260 LEU261 ILE262 LEU263 SER264 ASN265 SER266 TYR267 ASN268 MET269 GLY270 SER271 SER272 PHE273 GLY274 HIS275 THR276 ASN277 PHE278 LYS279 ASP280 PRO281 ASP282 ASN283 PHE284 THR285 PHE286 LYS287 GLY288 LEU289 GLU290 ALA291 SER292 GLY293 VAL294 LYS295 THR296 CYS297 ASP298 LEU299 SER300 LYS301 SER302 LYS303 ILE304 PHE305 ALA306 LEU307 LEU308 LYS309 SER310 VAL311 PHE312 SER313 HIS314 PHE315 THR316 ASP317 LEU318 GLU319 GLN320 LEU321 THR322 LEU323 ALA324 GLN325 ASN326 GLU327 ILE328 ASN329 LYS330 ILE331 ASP332 ASP333 ASN334 ALA335 PHE336 TRP337 GLY338 LEU339 THR340 HIS341 LEU342 LEU343 LYS344 LEU345 ASN346 LEU347 SER348 GLN349 ASN350 PHE351 LEU352 GLY353 SER354 ILE355 ASP356 SER357 ARG358 MET359 PHE360 GLU361 ASN362 LEU363 ASP364 LYS365 LEU366 GLU367 VAL368 LEU369 ASP370 LEU371 SER372 TYR373 ASN374 HIS375 ILE376 ARG377 ALA378 LEU379 GLY380 ASP381 GLN382 SER383 PHE384 LEU385 GLY386 LEU387 PRO388 ASN389 LEU390 LYS391 GLU392 LEU393 ALA394 LEU395 ASP396 THR397 ASN398 GLN399 LEU400 LYS401 SER402 VAL403 PRO404 ASP405 GLY406 ILE407 PHE408 ASP409 ARG410 LEU411 THR412 SER413 LEU414 GLN415 LYS416 ILE417 TRP418 LEU419 HIS420 THR421 ASN422 PRO423 TRP424 ASP425 CYS426 SER427 CYS428 PRO429 ARG430 ILE431 ASP432 TYR433 LEU434 SER435 ARG436 TRP437 LEU438 ASN439 LYS440 ASN441 SER442 GLN443 LYS444 GLU445 GLN446 GLY447 SER448 ALA449 LYS450 CYS451 SER452 GLY453 SER454 GLY455 LYS456 PRO457 VAL458 ARG459 SER460 ILE461 ILE462 CYS463 PRO464
Unit 2 GLU24 CYS25 SER26 VAL27 ILE28 GLY29 TYR30 ASN31 ALA32 ILE33 CYS34 ILE35 ASN36 ARG37 GLY38 LEU39 HIS40 GLN41 VAL42 PRO43 GLU44 LEU45 PRO46 ALA47 HIS48 VAL49 ASN50 TYR51 VAL52 ASP53 LEU54 SER55 LEU56 ASN57 SER58 ILE59 ALA60 GLU61 LEU62 ASN63 GLU64 THR65 SER66 PHE67 SER68 ARG69 LEU70 GLN71 ASP72 LEU73 GLN74 PHE75 LEU76 LYS77 VAL78 GLU79 GLN80 GLN81 THR82 PRO83 GLY84 LEU85 VAL86 ILE87 ARG88 ASN89 ASN90 THR91 PHE92 ARG93 GLY94 LEU95 SER96 SER97 LEU98 ILE99 ILE100 LEU101 LYS102 LEU103 ASP104 TYR105 ASN106 GLN107 PHE108 LEU109 GLN110 LEU111 GLU112 THR113 GLY114 ALA115 PHE116 ASN117 GLY118 LEU119 ALA120 ASN121 LEU122 GLU123 VAL124 LEU125 THR126 LEU127 THR128 GLN129 CYS130 ASN131 LEU132 ASP133 GLY134 ALA135 VAL136 LEU137 SER138 GLY139 ASN140 PHE141 PHE142 LYS143 PRO144 LEU145 THR146 SER147 LEU148 GLU149 MET150 LEU151 VAL152 LEU153 ARG154 ASP155 ASN156 ASN157 ILE158 LYS159 LYS160 ILE161 GLN162 PRO163 ALA164 SER165 PHE166 PHE167 LEU168 ASN169 MET170 ARG171 ARG172 PHE173 HIS174 VAL175 LEU176 ASP177 LEU178 THR179 PHE180 ASN181 LYS182 VAL183 LYS184 SER185 ILE186 CYS187 GLU188 GLU189 ASP190 LEU191 LEU192 ASN193 PHE194 GLN195 GLY196 LYS197 HIS198 PHE199 THR200 LEU201 LEU202 ARG203 LEU204 SER205 SER206 ILE207 THR208 LEU209 GLN210 ASP211 MET212 ASN213 GLU214 TYR215 TRP216 LEU217 GLY218 TRP219 GLU220 LYS221 CYS222 GLY223 ASN224 PRO225 PHE226 LYS227 ASN228 THR229 SER230 ILE231 THR232 THR233 LEU234 ASP235 LEU236 SER237 GLY238 ASN239 GLY240 PHE241 LYS242 GLU243 SER244 MET245 ALA246 LYS247 ARG248 PHE249 PHE250 ASP251 ALA252 ILE253 ALA254 GLY255 THR256 LYS257 ILE258 GLN259 SER260 LEU261 ILE262 LEU263 SER264 ASN265 SER266 TYR267 ASN268 MET269 GLY270 SER271 SER272 PHE273 GLY274 HIS275 THR276 ASN277 PHE278 LYS279 ASP280 PRO281 ASP282 ASN283 PHE284 THR285 PHE286 LYS287 GLY288 LEU289 GLU290 ALA291 SER292 GLY293 VAL294 LYS295 THR296 CYS297 ASP298 LEU299 SER300 LYS301 SER302 LYS303 ILE304 PHE305 ALA306 LEU307 LEU308 LYS309 SER310 VAL311 PHE312 SER313 HIS314 PHE315 THR316 ASP317 LEU318 GLU319 GLN320 LEU321 THR322 LEU323 ALA324 GLN325 ASN326 GLU327 ILE328 ASN329 LYS330 ILE331 ASP332 ASP333 ASN334 ALA335 PHE336 TRP337 GLY338 LEU339 THR340 HIS341 LEU342 LEU343 LYS344 LEU345 ASN346 LEU347 SER348 GLN349 ASN350 PHE351 LEU352 GLY353 SER354 ILE355 ASP356 SER357 ARG358 MET359 PHE360 GLU361 ASN362 LEU363 ASP364 LYS365 LEU366 GLU367 VAL368 LEU369 ASP370 LEU371 SER372 TYR373 ASN374 HIS375 ILE376 ARG377 ALA378 LEU379 GLY380 ASP381 GLN382 SER383 PHE384 LEU385 GLY386 LEU387 PRO388 ASN389 LEU390 LYS391 GLU392 LEU393 ALA394 LEU395 ASP396 THR397 ASN398 GLN399 LEU400 LYS401 SER402 VAL403 PRO404 ASP405 GLY406 ILE407 PHE408 ASP409 ARG410 LEU411 THR412 SER413 LEU414 GLN415 LYS416 ILE417 TRP418 LEU419 HIS420 THR421 ASN422 PRO423 TRP424 ASP425 CYS426 SER427 CYS428 PRO429 ARG430 ILE431 ASP432 TYR433 LEU434 SER435 ARG436 TRP437 LEU438 ASN439 LYS440 ASN441 SER442 GLN443 LYS444 GLU445 GLN446 GLY447 SER448 ALA449 LYS450 CYS451 SER452 GLY453 SER454 GLY455 LYS456 PRO457 VAL458 ARG459 SER460 ILE461 ILE462 CYS463 PRO464
Unit 3 SER64 ARG65 ASN66 ALA67 ASN68 ASP69 GLY70 ILE71 SER72 ILE73 ALA74 GLN75 THR76 THR77 GLU78 GLY79 ALA80 LEU81 ASN82 GLU83 ILE84 ASN85 ASN86 ASN87 LEU88 GLN89 ARG90 VAL91 ARG92 GLU93 LEU94 SER95 VAL96 GLN97 ALA98 THR99 ASN100 GLY101 THR102 ASN103 SER104 ASP105 SER106 ASP107 LEU108 LYS109 SER110 ILE111 GLN112 ASP113 GLU114 ILE115 GLN116 GLN117 ARG118 LEU119 GLU120 GLU121 ILE122 ASP123 ARG124 VAL125 SER126 ASN127 GLN128 THR129 GLN130 PHE131 ASN132 GLY133 VAL134 LYS135 VAL136 LEU137 SER138 GLN139 ASP140 ASN141 GLN142 MET143 LYS144 ILE145 GLN146 VAL147 GLY148 ALA149 ASN150 ASP151 GLY152 GLU153 THR154 ILE155 THR156 ILE157 ASP158 LEU159 GLN160 LYS161 ILE162 ASP163 VAL164 LYS165 SER166 LEU167 GLY168 LEU169 ASP170 GLY171 PHE172 ASN173 VAL174 ASN175 GLY176 PRO177 LYS178 GLU179 ALA180 THR181 VAL182 GLY183 ASP184 LEU185 LYS186 SER187 SER188 PHE189 LYS190 ASN191 VAL192 THR193 GLY194 TYR195 ASP196 THR197 TYR198 ALA199 ALA200 GLY201 ALA202 ASP203 LYS204 TYR205 ARG206 VAL207 ASP208 ILE209 ASN210 SER211 GLY212 ALA213 VAL214 VAL215 THR216 ASP217 ALA218 VAL219 ALA220 PRO221 ASP222 LYS223 VAL224 TYR225 VAL226 ASN227 ALA228 ALA229 ASN230 GLY231 GLN232 LEU233 THR234 THR235 ASP236 ASP237 ALA238 GLU239 ASN240 ASN241 THR242 LYS344 THR345 LYS346 ASN347 GLU348 SER349 ALA350 LYS351 LEU352 SER353 ASP354 LEU355 GLU356 ALA357 ASN358 ASN359 ALA360 VAL361 LYS362 GLY363 GLU364 SER365 LYS366 ILE367 THR368 VAL369 ASN370 GLY371 ALA372 GLU373 TYR374 THR375 ALA376 ASN377 ALA378 THR379 GLY380 ASP381 LYS382 ILE383 THR384 LEU385 ALA386 GLY387 LYS388 THR389 MET390 PHE391 ILE392 ASP393 LYS394 THR395 ALA396 SER397 GLY398 VAL399 SER400 THR401 LEU402 ILE403 ASN404 GLU405 ASP406 ALA407 ALA408 ALA409 ALA410 LYS411 LYS412 SER413 THR414 ALA415 ASN416 PRO417 LEU418 ALA419 SER420 ILE421 ASP422 SER423 ALA424 LEU425 SER426 LYS427 VAL428 ASP429 ALA430 VAL431 ARG432 SER433 SER434 LEU435 GLY436 ALA437 ILE438 GLN439 ASN440 ARG441 PHE442 ASP443 SER444 ALA445 ILE446 THR447 ASN448 LEU449 GLY450 ASN451 THR452 VAL453 THR454 ASN455 LEU456 ASN457 SER458 ALA459
Unit 4 GLN62 ALA63 SER64 ARG65 ASN66 ALA67 ASN68 ASP69 GLY70 ILE71 SER72 ILE73 ALA74 GLN75 THR76 THR77 GLU78 GLY79 ALA80 LEU81 ASN82 GLU83 ILE84 ASN85 ASN86 ASN87 LEU88 GLN89 ARG90 VAL91 ARG92 GLU93 LEU94 SER95 VAL96 GLN97 ALA98 THR99 ASN100 GLY101 THR102 ASN103 SER104 ASP105 SER106 ASP107 LEU108 LYS109 SER110 ILE111 GLN112 ASP113 GLU114 ILE115 GLN116 GLN117 ARG118 LEU119 GLU120 GLU121 ILE122 ASP123 ARG124 VAL125 SER126 ASN127 GLN128 THR129 GLN130 PHE131 ASN132 GLY133 VAL134 LYS135 VAL136 LEU137 SER138 GLN139 ASP140 ASN141 GLN142 MET143 LYS144 ILE145 GLN146 VAL147 GLY148 ALA149 ASN150 ASP151 GLY152 GLU153 THR154 ILE155 THR156 ILE157 ASP158 LEU159 GLN160 LYS161 ILE162 ASP163 VAL164 LYS165 SER166 LEU167 GLY168 LEU169 ASP170 GLY171 PHE172 ASN173 VAL174 ASN175 GLY176 PRO177 LYS178 GLU179 ALA180 THR181 VAL182 GLY183 ASP184 LEU185 LYS186 SER187 SER188 PHE189 LYS190 ASN191 VAL192 THR193 GLY194 TYR195 ASP196 THR197 TYR198 ALA199 ALA200 GLY201 ALA202 ASP203 LYS204 TYR205 ARG206 VAL207 ASP208 ILE209 ASN210 SER211 GLY212 ALA213 VAL214 VAL215 THR216 ASP217 ALA218 VAL219 ALA220 PRO221 ASP222 LYS223 VAL224 TYR225 VAL226 LEU233 THR234 THR235 ASP236 ASP237 ASN347 GLU348 SER349 ALA350 LYS351 LEU352 SER353 ASP354 LEU355 GLU356 ALA357 ASN358 ASN359 ALA360 VAL361 LYS362 GLY363 GLU364 SER365 LYS366 ILE367 THR368 VAL369 ASN370 GLY371 ALA372 GLU373 TYR374 THR375 ALA376 ASN377 ALA378 THR379 GLY380 ASP381 LYS382 ILE383 THR384 LEU385 ALA386 GLY387 LYS388 THR389 MET390 PHE391 ILE392 ASP393 LYS394 THR395 ALA396 SER397 GLY398 VAL399 SER400 THR401 LEU402 ILE403 ASN404 GLU405 ASP406 ALA407 ALA408 ALA409 ALA410 LYS411 LYS412 SER413 THR414 ALA415 ASN416 PRO417 LEU418 ALA419 SER420 ILE421 ASP422 SER423 ALA424 LEU425 SER426 LYS427 VAL428 ASP429 ALA430 VAL431 ARG432 SER433 SER434 LEU435 GLY436 ALA437 ILE438 GLN439 ASN440 ARG441 PHE442 ASP443 SER444 ALA445 ILE446 THR447 ASN448 LEU449 GLY450 ASN451 THR452 VAL453 THR454 ASN455 LEU456 ASN457 SER458 ALA459 ARG460
Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG801 NAG901
Unit 10 NAG901
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany