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(-) Description

Title :  LYSOZYME CONTAMINATION FACILITATES CRYSTALLIZATION OF A HETERO-TRIMERICCORTACTIN:ARG:LYSOZYME COMPLEX
 
Authors :  W. Liu, S. Macgrath, A. J. Koleske, T. J. Boggon
Date :  11 Nov 11  (Deposition) - 11 Jan 12  (Release) - 15 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Sh3, Protein-Protein Interaction, Hydrolase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Liu, S. M. Macgrath, A. J. Koleske, T. J. Boggon
Lysozyme Contamination Facilitates Crystallization Of A Heterotrimeric Cortactin-Arg-Lysozyme Complex.
Acta Crystallogr. , Sect. F V. 68 154 2012
PubMed-ID: 22297987  |  Reference-DOI: 10.1107/S1744309111056132

(-) Compounds

Molecule 1 - LYSOZYME C
    ChainsA
    EC Number3.2.1.17
    EngineeredYES
    GeneLYZ
    Organism CommonBANTAM,CHICKENS
    Organism ScientificGALLUS GALLUS
    Organism Taxid9031
    Synonym1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV
 
Molecule 2 - SRC SUBSTRATE CORTACTIN
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX6P-1
    Expression System StrainBL 21
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentSH3 DOMAIN (UNP RESIDUES 487-546)
    GeneCTTN, EMS1
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
 
Molecule 3 - ABELSON TYROSINE-PROTEIN KINASE 2
    ChainsC
    EngineeredYES
    FragmentPXXP1 (UNP RESIDUES 563-579)
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 2, ABELSON- RELATED GENE PROTEIN, TYROSINE-PROTEIN KINASE ARG
    SyntheticYES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3ULR)

(-) Sites  (0, 0)

(no "Site" information available for 3ULR)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:24 -A:145
2A:48 -A:133
3A:82 -A:98
4A:94 -A:112

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg B:545 -Gln B:546

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ULR)

(-) PROSITE Motifs  (3, 3)

Asymmetric/Biological Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LACTALBUMIN_LYSOZYME_2PS51348 Alpha-lactalbumin / lysozyme C family profile.LYSC_CHICK19-147  1A:19-147
2LACTALBUMIN_LYSOZYME_1PS00128 Alpha-lactalbumin / lysozyme C signature.LYSC_CHICK94-112  1A:94-112
3SH3PS50002 Src homology 3 (SH3) domain profile.SRC8_MOUSE488-546  1B:488-546

(-) Exons   (4, 4)

Asymmetric/Biological Unit (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENSGALT000000161961aENSGALE00000107726chr1:37298007-37298210204LYSC_CHICK1-46461A:19-4628
1.2ENSGALT000000161962ENSGALE00000107723chr1:37299463-37299624162LYSC_CHICK46-100551A:46-10055
1.3ENSGALT000000161963ENSGALE00000107724chr1:37301396-3730147479LYSC_CHICK100-126271A:100-12627
1.4aENSGALT000000161964aENSGALE00000107725chr1:37301556-37301734179LYSC_CHICK126-147221A:126-14722

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with LYSC_CHICK | P00698 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:129
                                    28        38        48        58        68        78        88        98       108       118       128       138         
           LYSC_CHICK    19 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 147
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....eee.....eee....ee...................hhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: A:19-147 UniProt: 19-147                                                                             PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------LACTALBUMIN_LYSOZYM----------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: A:19-46     -----------------------------------------------------Exon 1.3  PDB: A:100-126   --------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.2  PDB: A:46-100 UniProt: 46-100                -------------------------Exon 1.4a              Transcript 1 (2)
                 3ulr A  19 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 147
                                    28        38        48        58        68        78        88        98       108       118       128       138         

Chain B from PDB  Type:PROTEIN  Length:64
 aligned with SRC8_MOUSE | Q60598 from UniProtKB/Swiss-Prot  Length:546

    Alignment length:107
                                   449       459       469       479       489       499       509       519       529       539       
           SRC8_MOUSE   440 PEYSIEAAGIPEAGSQQGLTYTSEPVYETTEAPGHYQAEDDTYDGYESDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 546
               SCOP domains d           3ul                                rb_ B: automated matches                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-----------...--------------------------------......eee..................eeeeee.....eeeeee..eeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------SH3  PDB: B:488-546 UniProt: 488-546                        PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 3ulr B 483 P-----------LGS--------------------------------SDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 546
                            |        -  | |    -         -         -       489       499       509       519       529       539       
                          483         484 |                              487                                                           
                                        486                                                                                            

Chain C from PDB  Type:PROTEIN  Length:13
 aligned with ABL2_HUMAN | P42684 from UniProtKB/Swiss-Prot  Length:1182

    Alignment length:13
                                   572   
           ABL2_HUMAN   563 SSVVPYLPRLPIL 575
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 3ulr C 563 SSVVPYLPRLPIL 575
                                   572   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ULR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ULR)

(-) Gene Ontology  (89, 95)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (LYSC_CHICK | P00698)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0003796    lysozyme activity    Catalysis of the hydrolysis of the beta-(1->4) linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0001895    retina homeostasis    A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain B   (SRC8_MOUSE | Q60598)
molecular function
    GO:0005522    profilin binding    Interacting selectively and non-covalently with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0031532    actin cytoskeleton reorganization    A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of constituent parts of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0030041    actin filament polymerization    Assembly of actin filaments by the addition of actin monomers to a filament.
    GO:0048870    cell motility    Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
    GO:0097062    dendritic spine maintenance    The organization process that preserves a dendritic spine in a stable functional or structural state. A dendritic spine is a specialized protrusion from a neuronal dendrite and is involved in synaptic transmission.
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
    GO:0048041    focal adhesion assembly    The aggregation and bonding together of a set of components to form a focal adhesion, a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity.
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:0097581    lamellipodium organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lamellipodium. A lamellipodium is a thin sheetlike process extended by the leading edge of a crawling fibroblast; contains a dense meshwork of actin filaments.
    GO:2001237    negative regulation of extrinsic apoptotic signaling pathway    Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway.
    GO:0048812    neuron projection morphogenesis    The process in which the anatomical structures of a neuron projection are generated and organized. A neuron projection is any process extending from a neural cell, such as axons or dendrites.
    GO:0030838    positive regulation of actin filament polymerization    Any process that activates or increases the frequency, rate or extent of actin polymerization.
    GO:0045987    positive regulation of smooth muscle contraction    Any process that activates or increases the frequency, rate or extent of smooth muscle contraction.
    GO:0006898    receptor-mediated endocytosis    An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
    GO:0030516    regulation of axon extension    Any process that modulates the rate, direction or extent of axon extension.
    GO:1903146    regulation of mitophagy    Any process that modulates the frequency, rate or extent of mitochondrion degradation (mitophagy).
    GO:0006930    substrate-dependent cell migration, cell extension    The formation of a cell surface protrusion, such as a lamellipodium or filopodium, at the leading edge of a migrating cell.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005884    actin filament    A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005905    clathrin-coated pit    A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
    GO:0030863    cortical cytoskeleton    The portion of the cytoskeleton that lies just beneath the plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0043197    dendritic spine    A small, membranous protrusion from a dendrite that forms a postsynaptic compartment - typically receiving input from a single presynapse. They function as partially isolated biochemical and an electrical compartments. Spine morphology is variable including "thin", "stubby", "mushroom", and "branched", with a continuum of intermediate morphologies. They typically terminate in a bulb shape, linked to the dendritic shaft by a restriction. Spine remodeling is though to be involved in synaptic plasticity.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0030426    growth cone    The migrating motile tip of a growing nerve cell axon or dendrite.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0030027    lamellipodium    A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:1990023    mitotic spindle midzone    The area in the center of the anaphase spindle consisting of microtubules, microtubule bundling factors and kinesin motors where the spindle microtubules from opposite poles overlap in an antiparallel manner.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0002102    podosome    An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm.
    GO:0001726    ruffle    Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork.
    GO:0008076    voltage-gated potassium channel complex    A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential.

Chain C   (ABL2_HUMAN | P42684)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
    GO:0003785    actin monomer binding    Interacting selectively and non-covalently with monomeric actin, also known as G-actin.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004715    non-membrane spanning protein tyrosine kinase activity    Catalysis of the reaction: ATP + protein L-tyrosine = ADP + protein L-tyrosine phosphate by a non-membrane spanning protein.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0030036    actin cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0016477    cell migration    The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
    GO:0006464    cellular protein modification process    The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
    GO:0071300    cellular response to retinoic acid    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0038083    peptidyl-tyrosine autophosphorylation    The phosphorylation by a protein of one or more of its own tyrosine amino acid residues, or a tyrosine residue on an identical protein.
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0007204    positive regulation of cytosolic calcium ion concentration    Any process that increases the concentration of calcium ions in the cytosol.
    GO:0010976    positive regulation of neuron projection development    Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0051353    positive regulation of oxidoreductase activity    Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered.
    GO:0010863    positive regulation of phospholipase C activity    Any process that increases the rate of phospholipase C activity.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:2000249    regulation of actin cytoskeleton reorganization    Any process that modulates the frequency, rate or extent of actin cytoskeleton reorganization.
    GO:0010506    regulation of autophagy    Any process that modulates the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
    GO:0030155    regulation of cell adhesion    Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix.
    GO:2000145    regulation of cell motility    Any process that modulates the frequency, rate or extent of cell motility.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0030100    regulation of endocytosis    Any process that modulates the frequency, rate or extent of endocytosis.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007169    transmembrane receptor protein tyrosine kinase signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0031234    extrinsic component of cytoplasmic side of plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its cytoplasmic surface, but not integrated into the hydrophobic region.

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  SRC8_MOUSE | Q60598
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ABL2_HUMAN | P426842ecd 2kk1 2xyn 3gvu 3hmi 4eih
        LYSC_CHICK | P00698132l 193l 194l 1a2y 1aki 1at5 1at6 1azf 1b0d 1b2k 1bgi 1bhz 1bvk 1bvx 1bwh 1bwi 1bwj 1c08 1c10 1dpw 1dpx 1dqj 1e8l 1f0w 1f10 1f3j 1fdl 1flq 1flu 1flw 1fly 1fn5 1g7h 1g7i 1g7j 1g7l 1g7m 1gpq 1gwd 1gxv 1gxx 1h6m 1h87 1hc0 1hel 1hem 1hen 1heo 1hep 1heq 1her 1hew 1hf4 1hsw 1hsx 1ic4 1ic5 1ic7 1iee 1io5 1ioq 1ior 1ios 1iot 1ir7 1ir8 1ir9 1j1o 1j1p 1j1x 1ja2 1ja4 1ja6 1ja7 1jis 1jit 1jiy 1jj0 1jj1 1jj3 1jpo 1jto 1jtt 1kip 1kiq 1kir 1kxw 1kxx 1kxy 1lcn 1lj3 1lj4 1lje 1ljf 1ljg 1ljh 1lji 1ljj 1ljk 1lkr 1lks 1lma 1lpi 1lsa 1lsb 1lsc 1lsd 1lse 1lsf 1lsg 1lsm 1lsn 1lsy 1lsz 1lyo 1lys 1lyz 1lz8 1lz9 1lza 1lzb 1lzc 1lzd 1lze 1lzg 1lzh 1lzn 1lzt 1mel 1mlc 1n4f 1nby 1nbz 1ndg 1ndm 1p2c 1ps5 1qio 1qtk 1rcm 1rfp 1ri8 1rjc 1sf4 1sf6 1sf7 1sfb 1sfg 1sq2 1t3p 1t6v 1ua6 1uc0 1uco 1uia 1uib 1uic 1uid 1uie 1uif 1uig 1uih 1uuz 1v7s 1v7t 1vat 1vau 1vdp 1vdq 1vds 1vdt 1ved 1vfb 1w6z 1wtm 1wtn 1xei 1xej 1xek 1xfp 1xgp 1xgq 1xgr 1xgt 1xgu 1yik 1yil 1ykx 1yky 1ykz 1yl0 1yl1 1yqv 1z55 1zmy 1zv5 1zvh 1zvy 2a6u 2a7d 2a7f 2aub 2b5z 2blx 2bly 2bpu 2c8o 2c8p 2cds 2cgi 2d4i 2d4j 2d4k 2d6b 2d91 2dqc 2dqd 2dqe 2dqf 2dqg 2dqh 2dqi 2dqj 2eiz 2eks 2epe 2f2n 2f30 2f4a 2f4g 2fbb 2g4p 2g4q 2h9j 2h9k 2hfm 2hs7 2hs9 2hso 2htx 2hu1 2hu3 2hub 2i25 2i26 2i6z 2iff 2lym 2lyo 2lyz 2lzh 2lzt 2pc2 2q0m 2vb1 2w1l 2w1m 2w1x 2w1y 2war 2x0a 2xbr 2xbs 2xjw 2xth 2ybh 2ybi 2ybj 2ybl 2ybm 2ybn 2ydg 2yss 2yvb 2z12 2z18 2z19 2znw 2znx 2zq3 2zq4 2zyp 3a34 3a3q 3a3r 3a67 3a6b 3a6c 3a8z 3a90 3a91 3a92 3a93 3a94 3a95 3a96 3agg 3agh 3agi 3ajn 3atn 3ato 3aw6 3aw7 3az4 3az5 3az6 3az7 3b6l 3b72 3d9a 3e3d 3ems 3exd 3f6z 3g3a 3g3b 3hfm 3iju 3ijv 3j4g 3j6k 3kam 3lym 3lyo 3lyt 3lyz 3lzt 3m18 3m3u 3mbe 3n9a 3n9c 3n9e 3ojp 3ok0 3otp 3p4z 3p64 3p65 3p66 3p68 3qe8 3qng 3qy4 3rnx 3rt5 3ru5 3rw8 3rz4 3sp3 3t6u 3tmu 3tmv 3tmw 3tmx 3txb 3txd 3txe 3txf 3txg 3txh 3txi 3txj 3txk 3w6a 3wl2 3wmk 3wpj 3wpk 3wpl 3wu7 3wu8 3wu9 3wua 3wul 3wum 3wun 3wvx 3wvy 3ww5 3ww6 3wxt 3wxu 3zek 3zvq 4a7d 4a8a 4a8b 4aga 4axt 4b0d 4b1a 4b49 4b4e 4b4i 4b4j 4bad 4baf 4bap 4bs7 4c3w 4cj2 4d9z 4dc4 4dd0 4dd1 4dd2 4dd3 4dd7 4dd9 4dda 4ddb 4ddc 4dt3 4e3u 4eof 4et8 4et9 4eta 4etb 4etc 4etd 4ete 4fjr 4g49 4g4b 4g4c 4g4h 4gcb 4gcc 4gcd 4gce 4gcf 4gla 4glv 4gn3 4gn4 4gn5 4h1p 4h8x 4h8y 4h8z 4h90 4h91 4h92 4h93 4h94 4h9a 4h9b 4h9c 4h9e 4h9f 4h9h 4h9i 4hp0 4hpi 4hsf 4htk 4htn 4htq 4hv1 4hv2 4i8s 4ias 4iat 4ii8 4j1a 4j1b 4j7v 4kxi 4lfp 4lfx 4lgk 4lt0 4lt1 4lt2 4lt3 4lyb 4lyc 4lym 4lyo 4lyt 4lyz 4lzt 4m4o 4m6d 4mr1 4n0j 4n1c 4n1e 4n5r 4n8z 4n9r 4neb 4nfv 4ng1 4ng8 4ngi 4ngj 4ngk 4ngl 4ngo 4ngv 4ngw 4ngy 4ngz 4nhi 4nhp 4nhq 4nhs 4nht 4nij 4nsg 4nsh 4nsi 4nsj 4nwe 4nwh 4ny5 4o34 4ooo 4oot 4owa 4owb 4owc 4owe 4owh 4p2e 4pgj 4phi 4ppo 4prq 4pru 4qeq 4qgz 4qy9 4r0f 4r6c 4rds 4rlm 4rln 4rw1 4rw2 4tsa 4tsb 4tsc 4ttd 4tun 4tws 4u3x 4uwn 4uwu 4uwv 4w94 4w96 4wg1 4wg7 4wl6 4wl7 4wld 4wlt 4wlx 4wly 4wm1 4wm2 4wm3 4wm4 4wm5 4wm6 4wmg 4wo6 4wo9 4woa 4x3b 4xad 4xen 4xjb 4xjd 4xjf 4xjg 4xjh 4xji 4xn6 4xyy 4yem 4yen 4yeo 4ym8 4yop 4z3m 4z41 4z46 4z98 4zee 4zfp 4zix 5a3e 5a3z 5amy 5apc 5apd 5ape 5apf 5b05 5b06 5b07 5b1f 5b1g 5b59 5b5j 5c6i 5c6j 5c6l 5d5c 5d5f 5dl9 5dla 5dm9 5e4p 5e9r 5ebh 5f14 5f16 5f81 5f9u 5f9x 5fcp 5fdj 5fek 5fel 5fhw 5fst 5hll 5hmj 5hmv 5hnc 5hnl 5hq1 5i4w 5i4x 5i4y 5i53 5i54 5i5q 5idd 5iel 5ihg 5ii3 5ilc 5ilf 5j7c 5jen 5k2k 5k2n 5k2p 5k2q 5k2r 5k2s 5k7o 5kj9 5kki 5kkj 5kxk 5kxl 5kxm 5kxn 5kxo 5kxp 5kxr 5kxs 5kxt 5kxw 5kxx 5kxy 5kxz 5ky1 5l3h 5l3i 5l9j 5la5 5la8 5laf 5lag 5lin 5lio 5lvg 5lvh 5lvi 5lvj 5lxw 5lym 5lyt 5lyz 5m1y 5myy 5nbj 5ne0 5t3f 5tk0 5uvj 5v4g 5v4h 5v4i 6lyt 6lyz 7lyz 8lyz 9lyz
        SRC8_MOUSE | Q605982f9x

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3ULR)