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(-) Description

Title :  ADAMTS1 IN COMPLEX WITH A NOVEL N-HYDROXYFORMAMIDE INHIBITORS
 
Authors :  S. Gerhardt, D. Hargreaves
Date :  20 Dec 10  (Deposition) - 30 Mar 11  (Release) - 30 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Adamts1 Zn-Metalloprotease, Disintegrin, Metalloproteinase, Thrombospondin Motifs, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. De Savi, A. Pape, J. G. Cumming, A. Ting, P. D. Smith, J. N. Burrows, M. Mills, C. Davies, S. Lamont, D. Milne, C. Cook, P. Moore, Y. Sawyer, S. Gerhardt
The Design And Synthesis Of Novel N-Hydroxyformamide Inhibitors Of Adam-Ts4 For The Treatment Of Osteoarthritis
Bioorg. Med. Chem. Lett. V. 21 1376 2011
PubMed-ID: 21300546  |  Reference-DOI: 10.1016/J.BMCL.2011.01.036

(-) Compounds

Molecule 1 - A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 1
    ChainsA, B
    EC Number3.4.24.-
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentRESIDUES IN UNP 256-548
    GeneADAMTS1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymADAMTS-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 25)

Asymmetric Unit (6, 25)
No.NameCountTypeFull Name
1CD5Ligand/IonCADMIUM ION
2MG1Ligand/IonMAGNESIUM ION
3NA1Ligand/IonSODIUM ION
4NI14Ligand/IonNICKEL (II) ION
5QGF2Ligand/IonN-[(2S,4S)-1-({4-[(2,4-DICHLOROBENZYL)OXY]PIPERIDIN-1-YL}SULFONYL)-4-(5-FLUOROPYRIMIDIN-2-YL)-2-METHYLPENTAN-2-YL]-N-HYDROXYFORMAMIDE
6ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MG-1Ligand/IonMAGNESIUM ION
3NA-1Ligand/IonSODIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5QGF1Ligand/IonN-[(2S,4S)-1-({4-[(2,4-DICHLOROBENZYL)OXY]PIPERIDIN-1-YL}SULFONYL)-4-(5-FLUOROPYRIMIDIN-2-YL)-2-METHYLPENTAN-2-YL]-N-HYDROXYFORMAMIDE
6ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MG-1Ligand/IonMAGNESIUM ION
3NA-1Ligand/IonSODIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5QGF1Ligand/IonN-[(2S,4S)-1-({4-[(2,4-DICHLOROBENZYL)OXY]PIPERIDIN-1-YL}SULFONYL)-4-(5-FLUOROPYRIMIDIN-2-YL)-2-METHYLPENTAN-2-YL]-N-HYDROXYFORMAMIDE
6ZN-1Ligand/IonZINC ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:117 , LEU A:118 , GLY A:119 , ALA A:121 , VAL A:123 , PHE A:145 , THR A:146 , HIS A:149 , GLU A:150 , HIS A:153 , HIS A:159 , SER A:180 , LEU A:182 , PHE A:274 , ZN A:401BINDING SITE FOR RESIDUE QGF A 1
02AC2SOFTWAREQGF A:1 , HIS A:149 , HIS A:153 , HIS A:159BINDING SITE FOR RESIDUE ZN A 401
03AC3SOFTWAREGLU A:9 , ASP A:92 , ASP A:213 , HOH A:344 , HOH A:362BINDING SITE FOR RESIDUE CD A 501
04AC4SOFTWAREGLU A:63 , GLU A:68 , NI A:609BINDING SITE FOR RESIDUE CD A 502
05AC5SOFTWAREHIS A:28 , ASP B:231 , HOH B:342BINDING SITE FOR RESIDUE NI A 504
06AC6SOFTWAREGLU A:9 , ASP A:92 , ASP A:99 , CYS A:210 , ASP A:213 , HOH A:352BINDING SITE FOR RESIDUE CD A 601
07AC7SOFTWAREASP A:231 , HOH A:361 , HIS B:28BINDING SITE FOR RESIDUE CD A 602
08AC8SOFTWAREHIS A:61 , HOH A:359 , HOH A:360 , GLU B:242BINDING SITE FOR RESIDUE NI A 607
09AC9SOFTWAREGLU A:63 , GLU A:68 , CD A:502BINDING SITE FOR RESIDUE NI A 609
10BC1SOFTWAREHIS A:176BINDING SITE FOR RESIDUE NI A 611
11BC2SOFTWAREGLU A:242 , ASP A:243 , HIS B:61BINDING SITE FOR RESIDUE NI A 612
12BC3SOFTWAREHIS A:246BINDING SITE FOR RESIDUE NI A 613
13BC4SOFTWAREHIS A:273 , LEU B:267BINDING SITE FOR RESIDUE NI A 615
14BC5SOFTWAREHIS A:187 , ASP A:278 , ASN A:290BINDING SITE FOR RESIDUE MG A 621
15BC6SOFTWAREASP A:108 , LEU A:109 , CYS A:115 , THR A:117 , GLU A:137 , HOH A:373 , HOH A:374BINDING SITE FOR RESIDUE NA A 701
16BC7SOFTWARELEU B:118 , GLY B:119 , MET B:120 , VAL B:123 , GLN B:142 , PHE B:145 , THR B:146 , HIS B:149 , GLU B:150 , HIS B:153 , HIS B:159 , SER B:180 , LEU B:182 , ZN B:402BINDING SITE FOR RESIDUE QGF B 2
17BC8SOFTWAREQGF B:2 , HIS B:149 , HIS B:153 , HIS B:159BINDING SITE FOR RESIDUE ZN B 402
18BC9SOFTWAREGLU A:242 , HOH A:364 , HIS B:61 , HOH B:341BINDING SITE FOR RESIDUE NI B 503
19CC1SOFTWAREHIS A:61 , HOH A:345 , GLU B:242 , ASP B:243BINDING SITE FOR RESIDUE NI B 604
20CC2SOFTWAREGLU B:9 , ASP B:92 , ASP B:213BINDING SITE FOR RESIDUE CD B 605
21CC3SOFTWAREGLU B:9 , ASP B:92 , ASP B:99 , CYS B:210 , ASP B:213 , HOH B:303BINDING SITE FOR RESIDUE NI B 606
22CC4SOFTWAREHIS B:176 , HOH B:311BINDING SITE FOR RESIDUE NI B 617
23CC5SOFTWAREHIS B:207BINDING SITE FOR RESIDUE NI B 618
24CC6SOFTWAREHIS B:246BINDING SITE FOR RESIDUE NI B 619
25CC7SOFTWAREHIS B:187BINDING SITE FOR RESIDUE NI B 505

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:81 -A:133
2A:110 -A:115
3A:127 -A:210
4A:165 -A:194
5A:236 -A:259
6A:247 -A:269
7A:254 -A:288
8A:282 -A:293
9B:81 -B:133
10B:110 -B:115
11B:127 -B:210
12B:165 -B:194
13B:236 -B:259
14B:247 -B:269
15B:254 -B:288
16B:282 -B:293

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3Q2G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q2G)

(-) PROSITE Motifs  (3, 6)

Asymmetric Unit (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADAM_MEPROPS50215 ADAM type metalloprotease domain profile.ATS1_HUMAN258-467
 
  2A:6-215
B:6-215
2ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.ATS1_HUMAN398-407
 
  2A:146-155
B:146-155
3TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.ATS1_HUMAN559-614
 
908-967
854-905
  2A:298-299
B:298-299
-
-
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADAM_MEPROPS50215 ADAM type metalloprotease domain profile.ATS1_HUMAN258-467
 
  1A:6-215
-
2ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.ATS1_HUMAN398-407
 
  1A:146-155
-
3TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.ATS1_HUMAN559-614
 
908-967
854-905
  1A:298-299
-
-
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADAM_MEPROPS50215 ADAM type metalloprotease domain profile.ATS1_HUMAN258-467
 
  1-
B:6-215
2ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.ATS1_HUMAN398-407
 
  1-
B:146-155
3TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.ATS1_HUMAN559-614
 
908-967
854-905
  1-
B:298-299
-
-

(-) Exons   (5, 10)

Asymmetric Unit (5, 10)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002849841ENSE00001017374chr21:28217728-282165441185ATS1_HUMAN1-2442440--
1.5ENST000002849845ENSE00001017377chr21:28215004-28214658347ATS1_HUMAN244-3591162A:4-107
B:4-107
104
104
1.6cENST000002849846cENSE00001017373chr21:28214309-28214177133ATS1_HUMAN360-404452A:108-152
B:108-152
45
45
1.7dENST000002849847dENSE00001017382chr21:28213484-28213317168ATS1_HUMAN404-460572A:152-208 (gaps)
B:152-208 (gaps)
57
57
1.8aENST000002849848aENSE00001017378chr21:28212881-28212595287ATS1_HUMAN460-555962A:208-296 (gaps)
B:208-296 (gaps)
89
89
1.8dENST000002849848dENSE00001247753chr21:28212380-28212194187ATS1_HUMAN556-618632A:297-299
B:297-300
3
4
1.9aENST000002849849aENSE00001017375chr21:28212081-28211906176ATS1_HUMAN618-676590--
1.9cENST000002849849cENSE00001247815chr21:28210933-28210758176ATS1_HUMAN677-735590--
1.10bENST0000028498410bENSE00001923806chr21:28210597-282086061992ATS1_HUMAN735-9672330--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:282
 aligned with ATS1_HUMAN | Q9UHI8 from UniProtKB/Swiss-Prot  Length:967

    Alignment length:336
                                   265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585      
           ATS1_HUMAN   256 SHRYVETMLVADQSMAEFHGSGLKHYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHDEQKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMADVGTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDAKQCASLNGVNQDSHMMASMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQNPIQLPGDLPGTSYDANRQCQFTFGEDSKHCPDAASTCSTLWCTGTSGGVLVCQTKHFPWADGTSCGEGKWCINGKCVNKTDRKHFDTPFHGSWGMWGPWGDCSRTCGGGVQYTMRECDNPVP 591
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee..hhhhh.....hhhhhhhhhhhhhhhhh...........eeeeee.............eee...........eeeee....hhhhhhhhhhhhhh......hhhhh...-----.................hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhh.......----......ee.-----..ee...............eeee..eeee.----------------------------------------... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --ADAM_MEPRO  PDB: A:6-215 UniProt: 258-467                                                                                                                                                                         -------------------------------------------------------------------------------------------TSP1  PDB: A:298-299              PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: A:4-107 UniProt: 244-359 [INCOMPLETE]                                                    Exon 1.6c  PDB: A:108-152 UniProt: 360-404   -------------------------------------------------------Exon 1.8a  PDB: A:208-296 (gaps) UniProt: 460-555 [INCOMPLETE]                                  Exon 1.8d  PDB: A:297-299            Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.7d  PDB: A:152-208 (gaps) UniProt: 404-460        ----------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3q2g A   4 SHRYVETMLVADQSMAEFHGSGLKHYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHDEQKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMADVGTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDAKQCASLN-----SHMMASMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQNPIQLPGDLPGTSYDANRQCQFTFGEDSKHCP----TCSTLWCTG-----LVCQTKHFPWADGTSCGEGKWCINGKCVNK----------------------------------------LVP 299
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163     |   - |     183       193       203       213       223       233       243    |  253       | -   |   273       283       293  |      -         -         -         -   |  
                                                                                                                                                                                               169   175                                                                      248  253     261   267                          296                                      297  

Chain B from PDB  Type:PROTEIN  Length:282
 aligned with ATS1_HUMAN | Q9UHI8 from UniProtKB/Swiss-Prot  Length:967

    Alignment length:337
                                   265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       
           ATS1_HUMAN   256 SHRYVETMLVADQSMAEFHGSGLKHYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHDEQKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMADVGTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDAKQCASLNGVNQDSHMMASMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQNPIQLPGDLPGTSYDANRQCQFTFGEDSKHCPDAASTCSTLWCTGTSGGVLVCQTKHFPWADGTSCGEGKWCINGKCVNKTDRKHFDTPFHGSWGMWGPWGDCSRTCGGGVQYTMRECDNPVPK 592
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Reprolysin-3q2gB01 B:6-215                                                                                                                                                                                        --------------------------------     ---------     ------------------------------                                        ---- Pfam domains (1)
           Pfam domains (2) --Reprolysin-3q2gB02 B:6-215                                                                                                                                                                                        --------------------------------     ---------     ------------------------------                                        ---- Pfam domains (2)
         Sec.struct. author ..eeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhh.....hhhhhhhhhhhhhhh.............eeeeee.............eee...........eeeee....hhhhhhhhhhhhhh........hhhhhh-----.................hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhh......-----......ee.-----..ee..........eee..eeee..eeee.----------------------------------------.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --ADAM_MEPRO  PDB: B:6-215 UniProt: 258-467                                                                                                                                                                         -------------------------------------------------------------------------------------------TSP1  PDB: B:298-299               PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: B:4-107 UniProt: 244-359 [INCOMPLETE]                                                    Exon 1.6c  PDB: B:108-152 UniProt: 360-404   -------------------------------------------------------Exon 1.8a  PDB: B:208-296 (gaps) UniProt: 460-555 [INCOMPLETE]                                  Exon 1.8d  PDB: B:297-300             Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.7d  PDB: B:152-208 (gaps) UniProt: 404-460        ------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 3q2g B   4 SHRYVETMLVADQSMAEFHGSGLKHYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHDEQKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMADVGTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDAKQCASLN-----SHMMASMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQNPIQLPGDLPGTSYDANRQCQFTFGEDSKHC-----TCSTLWCTG-----LVCQTKHFPWADGTSCGEGKWCINGKCVNK----------------------------------------LVPR 300
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163     |   - |     183       193       203       213       223       233       243   |   253       | -   |   273       283       293  |      -         -         -         -   |   
                                                                                                                                                                                               169   175                                                                     247   253     261   267                          296                                      297   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q2G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q2G)

(-) Pfam Domains  (1, 2)

Asymmetric Unit

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (ATS1_HUMAN | Q9UHI8)
molecular function
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008237    metallopeptidase activity    Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0071374    cellular response to parathyroid hormone stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a parathyroid hormone stimulus.
    GO:0071380    cellular response to prostaglandin E stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin E stimulus.
    GO:0071305    cellular response to vitamin D    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus.
    GO:0060347    heart trabecula formation    The process of creating a trabecula in the heart. A trabecula is a tissue element in the form of a small beam, strut or rod.
    GO:0007229    integrin-mediated signaling pathway    A series of molecular signals initiated by the binding of extracellular ligand to an integrin on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0001822    kidney development    The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and/or excretes the end products of body metabolism in the form of urine.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0030728    ovulation    The release of a mature ovum/oocyte from an ovary.
    GO:0001542    ovulation from ovarian follicle    The process leading to the rupture of the follicle, releasing the centrally located oocyte into the oviduct. An example of this is found in Mus musculus.
    GO:0010976    positive regulation of neuron projection development    Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0044691    tooth eruption    The tooth development process in which the teeth enter the mouth and become visible.
cellular component
    GO:0005604    basement membrane    A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ATS1_HUMAN | Q9UHI82jih 2v4b 3q2h

(-) Related Entries Specified in the PDB File

3q2h