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3Q2G
Biol. Unit 1
Info
Asym.Unit (193 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
ADAMTS1 IN COMPLEX WITH A NOVEL N-HYDROXYFORMAMIDE INHIBITORS
Authors
:
S. Gerhardt, D. Hargreaves
Date
:
20 Dec 10 (Deposition) - 30 Mar 11 (Release) - 30 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Adamts1 Zn-Metalloprotease, Disintegrin, Metalloproteinase, Thrombospondin Motifs, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. De Savi, A. Pape, J. G. Cumming, A. Ting, P. D. Smith, J. N. Burrows, M. Mills, C. Davies, S. Lamont, D. Milne, C. Cook, P. Moore, Y. Sawyer, S. Gerhardt
The Design And Synthesis Of Novel N-Hydroxyformamide Inhibitors Of Adam-Ts4 For The Treatment Of Osteoarthritis
Bioorg. Med. Chem. Lett. V. 21 1376 2011
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
2a: MAGNESIUM ION (MGa)
3a: SODIUM ION (NAa)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
4c: NICKEL (II) ION (NIc)
4d: NICKEL (II) ION (NId)
4e: NICKEL (II) ION (NIe)
4f: NICKEL (II) ION (NIf)
4g: NICKEL (II) ION (NIg)
4h: NICKEL (II) ION (NIh)
4i: NICKEL (II) ION (NIi)
4j: NICKEL (II) ION (NIj)
4k: NICKEL (II) ION (NIk)
4l: NICKEL (II) ION (NIl)
4m: NICKEL (II) ION (NIm)
4n: NICKEL (II) ION (NIn)
5a: N-[(2S,4S)-1-({4-[(2,4-DICHLOROBEN... (QGFa)
5b: N-[(2S,4S)-1-({4-[(2,4-DICHLOROBEN... (QGFb)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
NI
-1
Ligand/Ion
NICKEL (II) ION
5
QGF
1
Ligand/Ion
N-[(2S,4S)-1-({4-[(2,4-DICHLOROBENZYL)OXY]PIPERIDIN-1-YL}SULFONYL)-4-(5-FLUOROPYRIMIDIN-2-YL)-2-METHYLPENTAN-2-YL]-N-HYDROXYFORMAMIDE
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC9 (SOFTWARE)
17: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:117 , LEU A:118 , GLY A:119 , ALA A:121 , VAL A:123 , PHE A:145 , THR A:146 , HIS A:149 , GLU A:150 , HIS A:153 , HIS A:159 , SER A:180 , LEU A:182 , PHE A:274 , ZN A:401
BINDING SITE FOR RESIDUE QGF A 1
02
AC2
SOFTWARE
QGF A:1 , HIS A:149 , HIS A:153 , HIS A:159
BINDING SITE FOR RESIDUE ZN A 401
03
AC3
SOFTWARE
GLU A:9 , ASP A:92 , ASP A:213 , HOH A:344 , HOH A:362
BINDING SITE FOR RESIDUE CD A 501
04
AC4
SOFTWARE
GLU A:63 , GLU A:68 , NI A:609
BINDING SITE FOR RESIDUE CD A 502
05
AC5
SOFTWARE
HIS A:28 , ASP B:231 , HOH B:342
BINDING SITE FOR RESIDUE NI A 504
06
AC6
SOFTWARE
GLU A:9 , ASP A:92 , ASP A:99 , CYS A:210 , ASP A:213 , HOH A:352
BINDING SITE FOR RESIDUE CD A 601
07
AC7
SOFTWARE
ASP A:231 , HOH A:361 , HIS B:28
BINDING SITE FOR RESIDUE CD A 602
08
AC8
SOFTWARE
HIS A:61 , HOH A:359 , HOH A:360 , GLU B:242
BINDING SITE FOR RESIDUE NI A 607
09
AC9
SOFTWARE
GLU A:63 , GLU A:68 , CD A:502
BINDING SITE FOR RESIDUE NI A 609
10
BC1
SOFTWARE
HIS A:176
BINDING SITE FOR RESIDUE NI A 611
11
BC2
SOFTWARE
GLU A:242 , ASP A:243 , HIS B:61
BINDING SITE FOR RESIDUE NI A 612
12
BC3
SOFTWARE
HIS A:246
BINDING SITE FOR RESIDUE NI A 613
13
BC4
SOFTWARE
HIS A:273 , LEU B:267
BINDING SITE FOR RESIDUE NI A 615
14
BC5
SOFTWARE
HIS A:187 , ASP A:278 , ASN A:290
BINDING SITE FOR RESIDUE MG A 621
15
BC6
SOFTWARE
ASP A:108 , LEU A:109 , CYS A:115 , THR A:117 , GLU A:137 , HOH A:373 , HOH A:374
BINDING SITE FOR RESIDUE NA A 701
16
BC9
SOFTWARE
GLU A:242 , HOH A:364 , HIS B:61 , HOH B:341
BINDING SITE FOR RESIDUE NI B 503
17
CC1
SOFTWARE
HIS A:61 , HOH A:345 , GLU B:242 , ASP B:243
BINDING SITE FOR RESIDUE NI B 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:6-215)
2: ZINC_PROTEASE (A:146-155)
3: TSP1 (A:298-299)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS1_HUMAN
258-467
1
A:6-215
-
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS1_HUMAN
398-407
1
A:146-155
-
3
TSP1
PS50092
Thrombospondin type-1 (TSP1) repeat profile.
ATS1_HUMAN
559-614
908-967
854-905
1
A:298-299
-
-
-
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Reprolysin_3q2gB01 (B:6-215)
1b: PFAM_Reprolysin_3q2gB02 (B:6-215)
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Families
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Organisms
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(
)
Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin
(9)
Homo sapiens (Human)
(9)
1a
Reprolysin-3q2gB01
B:6-215
1b
Reprolysin-3q2gB02
B:6-215
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (193 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (95 KB)
Header - Biol.Unit 2
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