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(-) Description

Title :  FK1 DOMAIN MUTANT A19T OF FKBP51, CRYSTAL FORM IV, IN PRESENCE OF DMSO
 
Authors :  A. Bracher, C. Kozany, A. -K. Thost, F. Hausch
Date :  28 Jul 10  (Deposition) - 01 Jun 11  (Release) - 28 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.96
Chains :  Asym./Biol. Unit :  A
Keywords :  Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophiline, Peptidyl- Prolyl Isomerase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Bracher, C. Kozany, A. K. Thost, F. Hausch
Structural Characterization Of The Ppiase Domain Of Fkbp51, A Cochaperone Of Human Hsp90.
Acta Crystallogr. , Sect. D V. 67 549 2011
PubMed-ID: 21636895  |  Reference-DOI: 10.1107/S0907444911013862

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP5
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX-HTB
    Expression System Strain: BL21(DE3) CODON+ RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AIG6, FKBP5, FKBP51
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP5, FK506-BINDING PROTEIN 5, FKBP-5, ROTAMASE, 51 KDA FK506-BINDING PROTEIN, 51 KDA FKBP, FKBP-51, 54 KDA PROGESTERONE RECEPTOR-ASSOCIATED IMMUNOPHILIN, FKBP54, P54, FF1 ANTIGEN, HSP90- BINDING IMMUNOPHILIN, ANDROGEN-REGULATED PROTEIN 6

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1DMS2Ligand/IonDIMETHYL SULFOXIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:38 , THR A:46 , ALA A:95 , HOH A:361BINDING SITE FOR RESIDUE DMS A 1
2AC2SOFTWAREPHE A:77 , VAL A:86 , ILE A:87 , TRP A:90 , TYR A:113 , HOH A:223BINDING SITE FOR RESIDUE DMS A 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3O5Q)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:119 -Pro A:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O5Q)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FKBP_PPIASEPS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.FKBP5_HUMAN50-138
165-251		  1A:50-138
-

(-) Exons   (4, 4)

Asymmetric/Biological Unit (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3bENST000003572663bENSE00001519071chr6:35656719-35656581139FKBP5_HUMAN-00--
1.4aENST000003572664aENSE00001370159chr6:35610620-35610497124FKBP5_HUMAN1-35351A:13-35 (gaps)30
1.5ENST000003572665ENSE00000747346chr6:35604935-35604791145FKBP5_HUMAN36-84491A:36-8449
1.6ENST000003572666ENSE00001391213chr6:35588051-35587909143FKBP5_HUMAN84-131481A:84-13148
1.7ENST000003572667ENSE00000747342chr6:35586987-35586873115FKBP5_HUMAN132-170391A:132-1409
1.8ENST000003572668ENSE00000747340chr6:35565181-35565025157FKBP5_HUMAN170-222530--
1.9ENST000003572669ENSE00000747304chr6:35558997-3555890791FKBP5_HUMAN222-252310--
1.10aENST0000035726610aENSE00000747303chr6:35554894-3555481184FKBP5_HUMAN253-280280--
1.11ENST0000035726611ENSE00000747302chr6:35547998-35547813186FKBP5_HUMAN281-342620--
1.12ENST0000035726612ENSE00000747301chr6:35545010-35544771240FKBP5_HUMAN343-422800--
1.13bENST0000035726613bENSE00001193215chr6:35543719-355413622358FKBP5_HUMAN423-457350--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
 aligned with FKBP5_HUMAN | Q13451 from UniProtKB/Swiss-Prot  Length:457

    Alignment length:135
                                    15        25        35        45        55        65        75        85        95       105       115       125       135     
          FKBP5_HUMAN     6 GAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 140
               SCOP domains d3o       5qa_ A: automated matches                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------FKBP_C-3o5qA01 A:43-135                                                                      ----- Pfam domains
         Sec.struct. author hhh-------hhhhhhhee........eeeeeee............eeeeeeeeee....eeeehhhhh..eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------FKBP_PPIASE  PDB: A:50-138 UniProt: 50-138                                               -- PROSITE
           Transcript 1 (1) Exon 1.4a  PDB: A:13-35 (gaps)Exon 1.5  PDB: A:36-84 UniProt: 36-84            -----------------------------------------------Exon 1.7  Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------Exon 1.6  PDB: A:84-131 UniProt: 84-131         --------- Transcript 1 (2)
                 3o5q A  13 GAP-------ATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 140
                              |      -|       25        35        45        55        65        75        85        95       105       115       125       135     
                             15      16
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O5Q)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: FKBP_C] (58)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FKBP5_HUMAN | Q13451)
molecular function
    GO:0005528    FK506 binding    Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506.
    GO:0031072    heat shock protein binding    Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0061077    chaperone-mediated protein folding    The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  FKBP5_HUMAN | Q13451
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP5_HUMAN | Q13451: 1kt0 3o5d 3o5e 3o5f 3o5g 3o5i 3o5j 3o5k 3o5l 3o5m 3o5o 3o5p 3o5r 4drh 4dri 4drk 4drm 4drn 4dro 4drp 4drq 4jfi 4jfj 4jfk 4jfl 4jfm 4r0x 4tw6 4tw7 4tx0 4w9o 4w9p 4w9q 5bxj 5dit 5diu 5div

(-) Related Entries Specified in the PDB File

1kt0 STRUCTURE OF FULL-LENGTH FKBP51
3o5d
3o5e
3o5f
3o5g
3o5i
3o5j
3o5k
3o5l
3o5m
3o5o
3o5p
3o5r