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(-) Description

Title :  INCREASING THE EFFICIENCY EFFICIENCY OF LIGANDS FOR THE FK506-BINDING PROTEIN 51 BY CONFORMATIONAL CONTROL: COMPLEX OF FKBP51 WITH 6-({(1S, 5R)-3-[2-(3,4-DIMETHOXYPHENOXY)ETHYL]-2-OXO-3,9-DIAZABICYCLO[3.3.1]NON-9-YL}SULFONYL)-1,3-BENZOTHIAZOL-2(3H)-ONE
 
Authors :  Y. Wang, A. Kirschner, A. Fabian, R. Gopalakrishnan, C. Kress, B. Hooge U. Koch, C. Kozany, A. Bracher, F. Hausch
Date :  28 Feb 13  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophiline, Peptidyl- Prolyl Isomerase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wang, A. Kirschner, A. K. Fabian, R. Gopalakrishnan, C. Kress, B. Hoogeland, U. Koch, C. Kozany, A. Bracher, F. Hausch
Increasing The Efficiency Of Ligands For Fk506-Binding Protein 51 By Conformational Control.
J. Med. Chem. V. 56 3922 2013
PubMed-ID: 23647266  |  Reference-DOI: 10.1021/JM400087K

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP5
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX-HTB
    Expression System Strain: BL21(DE3) CODON+ RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 16-140
    Gene: AIG6, FKBP5, FKBP51
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP5, 51 KDA FK506-BINDING PROTEIN, 51 KDA FKBP, FKBP-51, 54 KDA PROGESTERONE RECEPTOR-ASSOCIATED IMMUNOPHILIN, ANDROGEN-REGULATED PROTEIN 6, FF1 ANTIGEN, FK506-BINDING PROTEIN 5, FKBP-5, FKBP54, P54, HSP90-BINDING IMMUNOPHILIN, ROTAMASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11KY1Ligand/Ion6-({(1S,5R)-3-[2-(3,4-DIMETHOXYPHENOXY)ETHYL]-2-OXO-3,9-DIAZABICYCLO[3.3.1]NON-9-YL}SULFONYL)-1,3-BENZOTHIAZOL-2(3H)-ONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:57 , PHE A:67 , ASP A:68 , PHE A:77 , GLY A:84 , GLN A:85 , VAL A:86 , ILE A:87 , TRP A:90 , TYR A:113 , SER A:118 , LEU A:119 , PRO A:120 , LYS A:121 , ILE A:122 , PHE A:130 , HOH A:392 , HOH A:502 , HOH A:526 , HOH A:527 , HOH A:529BINDING SITE FOR RESIDUE 1KY A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JFL)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:119 -Pro A:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JFL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JFL)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4jfla_ A: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhee........eeeeeee............eeeeeeeeee....eeee.hhhh..eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jfl A  13 GAPATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 140
                                    22        32        42        52        62        72        82        92       102       112       122       132
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JFL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JFL)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  FKBP5_HUMAN | Q13451
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP5_HUMAN | Q13451: 1kt0 3o5d 3o5e 3o5f 3o5g 3o5i 3o5j 3o5k 3o5l 3o5m 3o5o 3o5p 3o5q 3o5r 4drh 4dri 4drk 4drm 4drn 4dro 4drp 4drq 4jfi 4jfj 4jfk 4jfm 4r0x 4tw6 4tw7 4tx0 4w9o 4w9p 4w9q 5bxj 5dit 5diu 5div

(-) Related Entries Specified in the PDB File

4jfi 4jfj 4jfk 4jfm