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Title :   EVALUATION OF SYNTHETIC FK506 ANALOGS AS LIGANDS FOR FKBP51 AND FKBP52: COMPLEX OF FKBP51 WITH {3-[(1R)-3-(3,4-DIMETHOXYPHENYL)-1-({[(2S)-1-(3,3-DIMETHYL-2-OXOPENTANOYL)PIPERIDIN-2-YL]CARBONYL}OXY) PROPYL]PHENOXY}ACETIC ACID

Authors :   R. Gopalakrishnan, C. Kozany, S. Gaali, C. Kress, B. Hoogeland, A. Brac F. Hausch

Date :   17 Feb 12 (Deposition) - 16 May 12 (Release) - 23 May 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophilin, Peptidyl- Prolyl Isomerase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Gopalakrishnan, C. Kozany, S. Gaali, C. Kress, B. Hoogeland, A. Bracher, F. Hausch
Evaluation Of Synthetic Fk506 Analogues As Ligands For The Fk506-Binding Proteins 51 And 52.
J. Med. Chem. V. 55 4114 2012
PubMed-ID: 22455444 | Reference-DOI: 10.1021/JM201746X

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP5
	Chains	:	A, B
	EC Number	:	5.2.1.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPROEX-HTB
	Expression System Strain	:	BL21(DE3) CODON+ RIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 16-140
	Gene	:	AIG6, FKBP5, FKBP51
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PPIASE FKBP5, 51 KDA FK506-BINDING PROTEIN, 51 KDA FKBP, FKBP-51, 54 KDA PROGESTERONE RECEPTOR-ASSOCIATED IMMUNOPHILIN, ANDROGEN-REGULATED PROTEIN 6, FF1 ANTIGEN, FK506-BINDING PROTEIN 5, FKBP-5, FKBP54, P54, HSP90-BINDING IMMUNOPHILIN, ROTAMASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	I63	2	Ligand/Ion	{3-[(1R)-3-(3,4-DIMETHOXYPHENYL)-1-({[(2S)-1-(3,3-DIMETHYL-2-OXOPENTANOYL)PIPERIDIN-2-YL]CARBONYL}OXY)PROPYL]PHENOXY}ACETIC ACID

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	I63	1	Ligand/Ion	{3-[(1R)-3-(3,4-DIMETHOXYPHENYL)-1-({[(2S)-1-(3,3-DIMETHYL-2-OXOPENTANOYL)PIPERIDIN-2-YL]CARBONYL}OXY)PROPYL]PHENOXY}ACETIC ACID

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	I63	1	Ligand/Ion	{3-[(1R)-3-(3,4-DIMETHOXYPHENYL)-1-({[(2S)-1-(3,3-DIMETHYL-2-OXOPENTANOYL)PIPERIDIN-2-YL]CARBONYL}OXY)PROPYL]PHENOXY}ACETIC ACID

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:19 , GLU A:20 , ARG A:31 , TYR A:57 , PHE A:67 , ASP A:68 , PHE A:77 , GLY A:84 , GLN A:85 , VAL A:86 , ILE A:87 , TRP A:90 , LYS A:108 , ALA A:112 , TYR A:113 , HOH A:314 , HOH A:324 , HOH A:521	BINDING SITE FOR RESIDUE I63 A 201
2	AC2	SOFTWARE	THR B:19 , GLU B:20 , ARG B:31 , TYR B:57 , PHE B:67 , ASP B:68 , GLY B:84 , GLN B:85 , VAL B:86 , ILE B:87 , TRP B:90 , LYS B:108 , ALA B:112 , TYR B:113 , ILE B:122 , PHE B:130 , HOH B:301 , HOH B:327 , HOH B:329 , HOH B:432	BINDING SITE FOR RESIDUE I63 B 201

(no "SS Bond" information available for 4DRK)

Asymmetric Unit

No.	Residues
1	Leu A:119	-	Pro A:120
2	Leu B:119	-	Pro B:120

(no "SAP(SNP)/Variant" information available for 4DRK)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FKBP_PPIASE	PS50059	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	FKBP5_HUMAN	50-138 165-251	2	A:50-138 B:50-138 -

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FKBP_PPIASE	PS50059	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	FKBP5_HUMAN	50-138 165-251	1	A:50-138 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FKBP_PPIASE	PS50059	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	FKBP5_HUMAN	50-138 165-251	1	- B:50-138 -

Asymmetric Unit (4, 8)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.3b	ENST00000357266	3b	ENSE00001519071	chr6:35656719-35656581	139	FKBP5_HUMAN	-	0	0	-	-
1.4a	ENST00000357266	4a	ENSE00001370159	chr6:35610620-35610497	124	FKBP5_HUMAN	1-35	35	2	A:13-35 (gaps) B:13-35 (gaps)	30 30
1.5	ENST00000357266	5	ENSE00000747346	chr6:35604935-35604791	145	FKBP5_HUMAN	36-84	49	2	A:36-84 B:36-84	49 49
1.6	ENST00000357266	6	ENSE00001391213	chr6:35588051-35587909	143	FKBP5_HUMAN	84-131	48	2	A:84-131 B:84-131	48 48
1.7	ENST00000357266	7	ENSE00000747342	chr6:35586987-35586873	115	FKBP5_HUMAN	132-170	39	2	A:132-140 B:132-139	9 8
1.8	ENST00000357266	8	ENSE00000747340	chr6:35565181-35565025	157	FKBP5_HUMAN	170-222	53	0	-	-
1.9	ENST00000357266	9	ENSE00000747304	chr6:35558997-35558907	91	FKBP5_HUMAN	222-252	31	0	-	-
1.10a	ENST00000357266	10a	ENSE00000747303	chr6:35554894-35554811	84	FKBP5_HUMAN	253-280	28	0	-	-
1.11	ENST00000357266	11	ENSE00000747302	chr6:35547998-35547813	186	FKBP5_HUMAN	281-342	62	0	-	-
1.12	ENST00000357266	12	ENSE00000747301	chr6:35545010-35544771	240	FKBP5_HUMAN	343-422	80	0	-	-
1.13b	ENST00000357266	13b	ENSE00001193215	chr6:35543719-35541362	2358	FKBP5_HUMAN	423-457	35	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:128
 aligned with FKBP5_HUMAN | Q13451 from UniProtKB/Swiss-Prot  Length:457

    Alignment length:135
                                    15        25        35        45        55        65        75        85        95       105       115       125       135     
          FKBP5_HUMAN     6 GAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 140
               SCOP domains d4d       rka_ A: automated matches                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhh-------hhhhhhhee........eeeeeee............eeeeeeeeee....eeee.hhhh..eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------FKBP_PPIASE  PDB: A:50-138 UniProt: 50-138                                               -- PROSITE
           Transcript 1 (1) Exon 1.4a  PDB: A:13-35 (gaps)Exon 1.5  PDB: A:36-84 UniProt: 36-84            -----------------------------------------------Exon 1.7  Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------Exon 1.6  PDB: A:84-131 UniProt: 84-131         --------- Transcript 1 (2)
                 4drk A  13 GAP-------ATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 140
                              |      -|       25        35        45        55        65        75        85        95       105       115       125       135     
                             15      16

Chain B from PDB  Type:PROTEIN  Length:127
 aligned with FKBP5_HUMAN | Q13451 from UniProtKB/Swiss-Prot  Length:457

    Alignment length:134
                                    15        25        35        45        55        65        75        85        95       105       115       125       135    
          FKBP5_HUMAN     6 GAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 139
               SCOP domains d4d       rkb_ B: automated matches                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hh-------hhhhhhhee........eeeeeee............eeeeeeeeee....eeee.hhhh..eeee......hhhhhhhhhh.....eeeeee.hhhh...............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------FKBP_PPIASE  PDB: B:50-138 UniProt: 50-138                                               - PROSITE
           Transcript 1 (1) Exon 1.4a  PDB: B:13-35 (gaps)Exon 1.5  PDB: B:36-84 UniProt: 36-84            -----------------------------------------------Exon 1.7 Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------Exon 1.6  PDB: B:84-131 UniProt: 84-131         -------- Transcript 1 (2)
                 4drk B  13 GAP-------ATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 139
                              |      -|       25        35        45        55        65        75        85        95       105       115       125       135    
                             15      16

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: FKBP-like (309)

Superfamily: FKBP-like (198)

Family: FKBP immunophilin/proline isomerase (153)

Protein domain: automated matches (34)

Human (Homo sapiens) [TaxId: 9606] (31)

1a	d4drka_	A:
1b	d4drkb_	B:

(no "CATH Domain" information available for 4DRK)

(no "Pfam Domain" information available for 4DRK)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FKBP5_HUMAN | Q13451)

molecular function
	GO:0005528	FK506 binding	Interacting selectively and non-covalently with the 23-membered macrolide lactone FK506.
	GO:0031072	heat shock protein binding	Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0061077	chaperone-mediated protein folding	The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0000413	protein peptidyl-prolyl isomerization	The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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Ligands, Modified Residues, Ions (1, 2)

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